Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07865
- Subject:
- XR_001743285.1
- Aligned Length:
- 4527
- Identities:
- 1294
- Gaps:
- 3227
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACCCAGAACTACAGTACCCAGAAAGCTCCGCTTCCCCTCCTGGGTGTTATTGCCCCTTTCCTGGTGCAGGACGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTAGTGGCCAGCGAGAGTGTCAGGCCTGGGGTTTTCTGTGTCCTTCCCTGGGTCAGGGACGAGCCAGTGACTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACTCTTGGGCGCTAAGCTTGGGAGGGAGCGCAGGAGGCCGCTGTCCTTCCTTTCCGGTTCACGTCACCCTTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCCCTCTGTTGCTCCACCTGCAGCCACTTGGACGGCTCCGGGACTGATTGCCTGGGGCAGGGGTGGCAGTCGA 296
Query 1 ----------------------------------------------------------------------ATGG 4
||||
Sbjct 297 GGCCGCCGGGGCCGAGGTGAGGCTGCAGCTCTCCGGGCGGCGGTAGCGCTGGGGAGGAGGAGGAGAGAAGATGG 370
Query 5 CGTCGGAGCTAGAGCCAGAGGTGCAGGCCATCGACCGGAGCTTGCTGGAATGTTCGGCCGAGGAGATTGCG--- 75
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGTCGGAGCTAGAGCCAGAGGTGCAGGCCATCGACCGGAGCTTGCTGGAATGTTCGGCCGAGGAGATTGCGGGG 444
Query 76 -------------------------------------------------------------------------- 75
Sbjct 445 GTGAGTGCCGGAACCCGGGCGGGTGCGTCTGCCCCTCGCAGGCCGCGCCTGTGGGGAGGAACCGACTCCTGGAC 518
Query 76 ---------------------------------------------------------GGGAAATGGCTGCAAGC 92
|||||||||||||||||
Sbjct 519 GTCCTGGAGCAGCCCGACCCAGACTTGGGGAAACAGCTGTGCCGGCCCTCGCCTTGTGGGAAATGGCTGCAAGC 592
Query 93 AACTGACCTCACTAGAGAAGTGTACCAGCATTTAGCCCACTATGTACCCAAAATCTACTGCAGGGGTCCCAACC 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACTGACCTCACTAGAGAAGTGTACCAGCATTTAGCCCACTATGTACCCAAAATCTACTGCAGGGGTCCCAACC 666
Query 167 CTTTTCCACAGAAAGAAGACATGCTGGCACAGCATGTTTTGTTGGGACCAATGGAATGGTACCTTTGTGGTGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTTTTCCACAGAAAGAAGACATGCTGGCACAGCATGTTTTGTTGGGACCAATGGAATGGTACCTTTGTGGTGAA 740
Query 241 GATCCTGCATTTGGATTTCCAAAACTTGAGCAAGCAAACAAACCTTCTCATCTTTGTGGTCGTGTTTTTAAAGT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GATCCTGCATTTGGATTTCCAAAACTTGAGCAAGCAAACAAACCTTCTCATCTTTGTGGTCGTGTTTTTAAAGT 814
Query 315 AGGAGAGCCTACATATTCTTGCAGAGACTGTGCAGTTGATCCAACTTGTGTTTTGTGCATGGAGTGCTTTTTGG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGGAGAGCCTACATATTCTTGCAGAGACTGTGCAGTTGATCCAACTTGTGTTTTGTGCATGGAGTGCTTTTTGG 888
Query 389 GAAGTATTCACAGAGATCATCGATATAGGATGACAACATCAGGAGGTGGAGGTTTCTGTGACTGTGGTGATACT 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGTATTCACAGAGATCATCGATATAGGATGACAACATCAGGAGGTGGAGGTTTCTGTGACTGTGGTGATACT 962
Query 463 GAAGCCTGGAAAGAGGGTCCTTACTGTCAAAAACATGAACTTAACACCTCTGAAATTGAGGAAGAAGAGGATCC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAAGCCTGGAAAGAGGGTCCTTACTGTCAAAAACATGAACTTAACACCTCTGAAATTGAGGAAGAAGAGGATCC 1036
Query 537 TCTTGTTCATTTATCAGAAGATGTGATAGCAAGAACTTATAACATTTTTGCTATTACGTTTCGGTATGCAGTAG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCTTGTTCATTTATCAGAAGATGTGATAGCAAGAACTTATAACATTTTTGCTATTACGTTTCGGTATGCAGTAG 1110
Query 611 AAATATTAACCTGGGAAAAAGAAAGTGAATTGCCAGCAGATTTAGAGATGGTAGAGAAGAGTGACACCTACTAT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAATATTAACCTGGGAAAAAGAAAGTGAATTGCCAGCAGATTTAGAGATGGTAGAGAAGAGTGACACCTACTAT 1184
Query 685 TGCATGCTGTTTAATGATGAGGTTCACACCTACGAACAAGTTATTTATACTCTTCAGAAAGCTGTTAACTGTAC 758
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGCATGCTGTTTAATGATGAGGTTCACACCTATGAACAAGTTATTTATACTCTTCAGAAAGCTGTTAACTGTAC 1258
Query 759 ACAAAAAGAAGCTATTGGTTTTGCAACTACAGTAGATCGAGATGGGCGTAGGTCTGTTCGATATGGAGATTTTC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACAAAAAGAAGCTATTGGTTTTGCAACTACAGTAGATCGAGATGGGCGTAGGTCTGTTCGATATGGAGATTTTC 1332
Query 833 AGTATTGTGAGCAAGCAAAATCAGTAATTGTGAGAAATACCAGTAGACAGACAAAGCCACTCAAAGTTCAAGTT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGTATTGTGAGCAAGCAAAATCAGTAATTGTGAGAAATACCAGTAGACAGACAAAGCCACTCAAAGTTCAAGTT 1406
Query 907 ATGCATTCGTCTATTGTCGCACATCAGAATTTTGGTTTGAAACTTTTGTCTTGGCTGGGAAGTATTATTGGATA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATGCATTCGTCTATTGTCGCACATCAGAATTTTGGTTTGAAACTTTTGTCTTGGCTGGGAAGTATTATTGGATA 1480
Query 981 TTCAGATGGCCTTCGCCGGATTTTATGTCAAGTTGGTTTACAAGAAGGGCCAGATGGTGAAAACTCTTCTCTAG 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTCAGATGGCCTTCGCCGGATTTTATGTCAAGTTGGTTTACAAGAAGGGCCAGATGGTGAAAACTCTTCTCTAG 1554
Query 1055 TGGACAGACTGATGCTTAGTGATTCCAAATTATGGAAAGGTGCTAGGAGTGTATATCATCAGTTGTTCATGAGC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGGACAGACTGATGCTTAGTGATTCCAAATTATGGAAAGGTGCTAGGAGTGTATATCATCAGTTGTTCATGAGC 1628
Query 1129 AGTCTGCTTATGGATTTGAAATACAAGAAACTATTTGCTGTTCGATTTGCAAAAAACTATGAGCGTTTGCAGAG 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGTCTGCTTATGGATTTGAAATACAAGAAACTATTTGCTGTTCGATTTGCAAAAAACTATGAGCGTTTGCAGAG 1702
Query 1203 TGATTATGTGACAGATGACCACGACAGAGAGTTTTCAGTCGCAGACCTCTCGGTTCAGATATTCACGGTTCCTT 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGATTATGTGACAGATGACCACGACAGAGAGTTTTCAGTCGCAGACCTCTCGGTTCAGATATTCACGGTTCCTT 1776
Query 1277 CACTTTTCTCTATCTCTGCTGGGCGCAGTGGCTCACCTCTG--------------------------------- 1317
|||| |||| ||.| .|||||.|.|.|
Sbjct 1777 CACT------------TGCT---CGAA--TGCTCATCACAGAAGAAAACTTAATGAGCATTATCATTAAGACTT 1833
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1834 TTATGGATCATTTGAGACATCGAGATGCCCAGGGCAGATTTCAGTTTGAACGATACACTGCTTTACAAGCCTTC 1907
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1908 AAATTTAGGAGAGTACAGAGCCTTATTTTAGATCTCAAGTATGTGTTAATTAGCAAACCAACTGAATGGTCAGA 1981
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1982 TGAGCTGAGGCAGAAGTTCCTAGAAGGGTTTGATGCCTTTTTGGAATTACTAAAATGTATGCAGGGAATGGATC 2055
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2056 CAATTACACGTCAAGTAGGACAACATATTGAAATGGAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAA 2129
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2130 TTAACACATGTCATTTCAATGATGCAGGACTGGTGTGCTTCAGATGAAAAAGTGTTAATCGAAGCTTACAAGAA 2203
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2204 ATGTCTCGCTGTACTGATGCAGTGTCATGGTGGTTATACTGATGGTGAACAGCCAATCACACTAAGCATTTGTG 2277
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2278 GACATTCAGTGGAAACTATCAGATACTGTGTTTCCCAAGAAAAAGTTAGCATTCACCTCCCAGTTTCTCGCTTA 2351
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2352 CTTGCAGGTTTACATGTATTATTAAGCAAAAGTGAAGTGGCATATAAATTTCCAGAGCTCCTACCTCTAAGTGA 2425
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2426 ACTTAGCCCACCCATGTTGATAGAACACCCTCTTAGATGTCTTGTTCTGTGTGCCCAAGTACATGCCGGAATGT 2499
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2500 GGAGAAGAAATGGGTTCTCTCTAGTAAACCAGATTTATTACTACCATAATGTGAAATGCAGACGTGAGATGTTT 2573
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2574 GACAAGGATGTAGTAATGCTTCAGACAGGTGTCTCCATGATGGATCCAAATCATTTCCTGATGATCATGCTCAG 2647
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2648 CCGCTTTGAACTTTATCAGATTTTCAGTACTCCAGACTATGGAAAAAGATTTAGTTCTGAGATTACCCATAAGG 2721
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2722 ATGTTGTTCAGCAGAACAATACTCTAATAGAAGAAATGCTATACCTCATTATAATGCTTGTTGGAGAGAGATTT 2795
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2796 AGTCCTGGAGTTGGACAGGTAAATGCTACAGATGAAATCAAGCGAGAGATTATCCATCAGTTGAGTATCAAGCC 2869
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2870 TATGGCTCATAGTGAATTGGTAAAGTCTTTACCTGAAGATGAGAACAAGGAGACTGGCATGGAGAGTGTAATCG 2943
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2944 AAGCAGTTGCCCATTTCAAGAAACCTGGATTAACAGGACGAGGCATGTATGAACTGAAACCAGAATGTGCCAAA 3017
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3018 GAGTTCAACTTGTATTTCTATCACTTTTCAAGGGCAGAACAGTCCAAGGCAGAAGAAGCGCAACGGAAATTGAA 3091
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3092 AAGACAAAATAGAGAAGATACAGCACTCCCACCTCCGGTGTTGCCTCCATTCTGCCCTCTGTTTGCAAGCCTGG 3165
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3166 TTAACATTTTGCAGTCAGATGTCATGTTGTGCATCATGGGAACAATTCTGCAATGGGCTGTGGAACATAATGGA 3239
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3240 TATGCCTGGTCAGAGTCCATGCTGCAAAGGGTGTTACATTTAATTGGCATGGCACTACAAGAAGAAAAACAACA 3313
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3314 TTTAGAGAATGTCACGGAAGAGCATGTAGTAACATTTACCTTCACTCAGAAGATATCAAAACCTGGTGAAGCGC 3387
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3388 CAAAAAATTCTCCTAGCATACTAGCTATGCTGGAAACACTACAAAATGCTCCCTACCTAGAAGTCCACAAAGAC 3461
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3462 ATGATTCGGTGGATATTGAAGACTTTTAATGCTGTTAAAAAGATGAGGGAGAGTTCACCTACCAGTCCCGTGGC 3535
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3536 AGAGACAGAAGGAACCATAATGGAAGAGAGTTCAAGGGACAAAGACAAAGCTGAGAGGAAGAGAAAAGCAGAGA 3609
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3610 TTGCCAGACTGCGCAGAGAAAAGATCATGGCTCAGATGTCTGAAATGCAGCGGCATTTTATTGATGAAAACAAA 3683
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3684 GAACTCTTTCAGCAGACATTAGAACTGGATGCCTCAACCTCTGCTGTTCTTGATCATAGCCCTGTGGCTTCAGA 3757
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3758 TATGACACTTACAGCACTGGGCCCCGCACAAACTCAGGTTCCTGAACAAAGACAATTCGTTACATGTATATTGT 3831
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3832 GTCAAGAGGAGCAAGAAGTTAAAGTGGAAAGCAGGGCAATGGTCTTGGCAGCATTTGTTCAGAGATCAACTGTA 3905
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3906 TTATCAAAAAACAGAAGTAAATTTATTCAAGATCCAGAAAAATATGATCCATTATTCATGCACCCTGATCTGTC 3979
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3980 TTGTGGAACACACACTAGTAGCTGTGGGCACATTATGCATGCCCATTGTTGGCAAAGCTAAAGAACAGCGAAGG 4053
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4054 CAACAGAGATTACGCTTACATACGAGCTATGATGTAGAAAACGGAGAATTCCTTTGCCCCCTTTGTGAATGCTT 4127
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4128 GAGTAATACTGTTATTCCTCTGCTGCTTCCTCCAAGAAATATTTTTAACAACAGGTTAAATTTTTCAGACCAAC 4201
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4202 CAAATCTGACTCAGTGGATTAGAACAATATCTCAGCAAATAAAAGCATTACAGTTTCTTAGGAAAGAAGAAAGT 4275
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4276 ACTCCTAATAATGCCTCTACAAAGAATTCAGAAAATGTGGATGAATTACAGCTCCCTGAAGGGTTCAGGCCTGA 4349
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4350 TTTTCGTCCTAAGATCCCTTATTCTGAGAGCATAAAAGAAATGCTAACGACATTTGGAACTGCTACCTACAAGG 4423
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4424 TGGGACTAAAGGTTCATCCCAATGAAGAGGATCCTCGTGTTCCCATAATGTGTTGGGGTAGCTGCGCGTACACC 4497
Query 1318 ------------- 1317
Sbjct 4498 ATCCAAAGCATAG 4510
