Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07995
Subject:
XR_001738697.1
Aligned Length:
4033
Identities:
1721
Gaps:
2309

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCGCGCAGGCGCTGTGGTGGGCTCCGGTGCACTGTGGGATGGAAACCGGAGCGGCGCGTCCTGGCAGGACCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGGCGGCGGCGGCGGGGCCGGCGGCGGCCAGGGACCCGGGCTTAGGCTCGGCCAGGCCGGCTGAGGGGCGCGG  148

Query    1  --------------------------ATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTG  48
                                      ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCGGCCAGCGGGCGGCGGACGCCGTCATGAACGCGGCGGTGGTGAGGCGGACGCAGGAGGCGCTGGGGAAAGTG  222

Query   49  ATTCGGAGGCCGCCGCTGACAGAGAAGCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGA  122
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATTCGGAGGCCGCCGCTGACCGAGAAGCTGCTGAGCAAGCCCCCGTTCCGCTACCTGCACGACATCATCACGGA  296

Query  123  GGTGATTAGAATGACTGGTTTCATGAAGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATA  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGTGATTAGAATGACTGGTTTCATGAAGGGCCTCTACACAGACGCCGAGATGAAGTCTGATAATGTGAAGGATA  370

Query  197  AAGATGCAAAAATTAGCTTCCTACAAAAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCC  270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAGATGCAAAAATTAGCTTCCTACAAAAGGCCATAGACGTGGTTGTAATGGTGTCGGGAGAGCCACTGTTGGCC  444

Query  271  AAACCAGCCCGAATCGTGGCGGGGCATGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTG  344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAACCAGCCCGAATCGTGGCGGGGCATGAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAAATGCTG  518

Query  345  TCTCAACAAGCTCTCTAGTGACGATGCGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGG  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCTCAACAAGCTCTCTAGTGACGATGCGGTGCGGAGGGTTTTAGCTGGAGAGAAGGGAGAAGTGAAAGGCCGGG  592

Query  419  CCTCACTGACCTCAAGATCTCAGGAATTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAAT  492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCTCACTGACCTCAAGATCTCAGGAATTGGATAATAAGAATGTGCGAGAAGAAGAGTCCAGAGTTCACAAAAAT  666

Query  493  ACAGAGGATAGAGGAGACGCTGAAATAAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAA  566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACAGAGGATAGAGGAGACGCTGAAATAAAAGAGAGAAGTACAAGCAGAGATCGAAAACAGAAGGAAGAATTGAA  740

Query  567  AGAAGACCGCAAGCCAAGAGAAAAGGACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAG  640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGAAGACCGCAAGCCAAGAGAAAAGGACAAGGACAAGGAGAAGGCCAAGGAGAATGGCGGAAACAGACACAGAG  814

Query  641  AAGGGGAGAGAGAGAGAGCCAAAGCCCGGGCCAGGCCAGACAGCGAGCGACAGAAAGACAGAGGCAACAGGGAG  714
            ||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct  815  AAGGGGAGAGAGAGAGAGCCAAAGCCCGGGCCAGGCCAGACAACGAGCGACAGAAAGACAGAGGCAACAGGGAG  888

Query  715  CGGGACAGAGACTCCGAGCGCAAGAAGGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAG  788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CGGGACAGAGACTCCGAGCGCAAGAAGGAGACAGAGAGAAAGAGTGAGGGGGGGAAAGAGAAGGAGAGACTGAG  962

Query  789  AGACAGGGACCGAGAGCGCGACCGGGACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACT  862
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGACAGGGACCGAGAGCGCGACCGGGACAAAGGGAAGGACAGGGACAGACGGAGAGTGAAAAACGGGGAGCACT  1036

Query  863  CCTGGGACCTGGACAGGGAGAAGAACAGAGAGCATGACAAACCCGAGAAAAAGTCAGCAAGCTCAGGGGAGATG  936
            |||||||||||||||||||||||||||||||||||||||||||.||||||                        
Sbjct 1037  CCTGGGACCTGGACAGGGAGAAGAACAGAGAGCATGACAAACCTGAGAAA------------------------  1086

Query  937  TCTAAAAAGTTATCAGATGGAACTTTTAAAGACTCCAAGGCTGAAACAGAGACTGAGATTTCCACTAGAGCTTC  1010
                                                                                      
Sbjct 1087  --------------------------------------------------------------------------  1086

Query 1011  CAAGTCATTGACAACAAAAACATCAAAACGGCGATCCAAAAATTCAGTGGAAGGTGACTCCACCAGTGATGCAG  1084
                                                              ||||||||||||||||||||||  
Sbjct 1087  --------------------------------------------------AAGGTGACTCCACCAGTGATGC--  1108

Query 1085  AAGGAGATGCTGGACCTGCTGGCCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCA  1158
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109  -AGGAGATGCTGGACCTGCTGGCCAAGATAAGTCTGAGGTGCCAGAGACTCCAGAAATTCCTAATGAGCTTTCA  1181

Query 1159  TCCAACATCAGAAGAATTCCTCGGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCAT  1232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  TCCAACATCAGAAGAATTCCTCGGCCTGGGAGTGCAAGACCAGCCCCTCCCCGGGTCAAACGGCAAGACAGCAT  1255

Query 1233  GGAGGCGCTACAAATGGATAGGTCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTG  1306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  GGAGGCGCTACAAATGGATAGGTCAGGGAGTGGTAAAACCGTTTCAAATGTGATTACAGAGTCACACAATTCTG  1329

Query 1307  ACAATGAAGAGGATGATCAATTTGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTA  1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330  ACAATGAAGAGGATGATCAATTTGTGGTGGAAGCTGCCCCTCAGCTCTCTGAAATGTCAGAAATTGAAATGGTA  1403

Query 1381  ACAGCAGTGGAACTAGAAGAAGAGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTA  1454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  ACAGCAGTGGAACTAGAAGAAGAGGAGAAGCATGGTGGACTTGTGAAAAAAATTTTGGAGACGAAGAAAGATTA  1477

Query 1455  TGAGAAATTGCAGCAGTCACCCAAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGA  1528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478  TGAGAAATTGCAGCAGTCACCCAAACCTGGGGAGAAGGAGCGATCTCTCTTTGAGTCGGCATGGAAGAAGGAGA  1551

Query 1529  AGGACATCGTTTCCAAGGAGATAGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTG  1602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552  AGGACATCGTTTCCAAGGAGATAGAGAAGCTCCGCACGTCCATCCAGACCCTGTGCAAGAGCGCACTTCCCCTG  1625

Query 1603  GGGAAGATCATGGACTACATCCAGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAA  1676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626  GGGAAGATCATGGACTACATCCAGGAAGACGTGGATGCCATGCAGAATGAGCTGCAGATGTGGCACAGCGAGAA  1699

Query 1677  CAGGCAGCACGCCGAGGCCCTGCAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGC  1750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700  CAGGCAGCACGCCGAGGCCCTGCAGCAGGAGCAGAGGATCACAGACTGTGCCGTGGAGCCCTTAAAGGCTGAGC  1773

Query 1751  TCGCGGAGCTGGAGCAGCTGATCAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAAT  1824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774  TCGCGGAGCTGGAGCAGCTGATCAAAGACCAGCAAGACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAAT  1847

Query 1825  GAAGAAAAAATCCAGAAAATGGTATATAGTATCAATTTGACTTCGAGAAGG-----------------------  1875
            |||||||||||||||||||||||||||||||||||||||||||||||||||                       
Sbjct 1848  GAAGAAAAAATCCAGAAAATGGTATATAGTATCAATTTGACTTCGAGAAGGTGAACACTCAAAAGTTTCAGAGA  1921

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 1922  TGAAAAGTCACCTCAGTTTAAAAGCAAAAAGGAAGATAGAAAATCATTACTCTTTTAAGTTCCAGTTTGCTAAG  1995

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 1996  AAAATGAACAGTTTACAATGTTATTATCCAGCTAATTTTCAGAGCTTTAAAACTGTAAGCATGTTAAGTGTATT  2069

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2070  AAAAAAACCATGTTTTCTTACCTCCTTCCAGATGGAATACTGGCTAGTTATAAATAGCGCTTCCAAACACCTCT  2143

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2144  GTGAAAAGTTTTTTTGAAAGCCTGTTCTTTGTGTTTCTGCTGTAACCTGTTTAGTTCTGTACCAGAACTCTCTA  2217

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2218  GCAGGTAAGTGGTGTGGGCATACCAAGGGAACAGTAGTCCTTTATTTTGGTTTAGTGGAAAGACTTTCAGAGGT  2291

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2292  CAGTGCCGAATGAAGGATGACTGTGTACTTTTTGATAGGCACTTGATAAGTAGAATGAGGCCTGAAAATGAATA  2365

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2366  CATTATATTTTTAGTTAATTTCCAATGGAAAGGGCTAACCTCAGCCTGTCTCCATATCAGGTACCTATCAACTG  2439

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2440  GATTGTTTTCATTTTTGTTTTTTGACCTCTTTGTAATTGCATGTACTTCTCTATGTAATTTTCCTCTTGATCTC  2513

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2514  TACTATCGTTTGCTTGTGTTTCTAGTCCTTAAAGTTCATAAATTTAAAAAGGAGATTTCAGGATGGCCTTTATG  2587

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2588  GACGTTGTCTGGACATACATCCTCACTTTCTTCCGCAGTTTACCCTGGTTTTCCTCAGACAGAGGCTAGCGCAG  2661

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2662  CCCCCCGGAGTCCTTGTTCTCCTTAAGAGGGTCTCGCTCTGCAAAGCATTGGCGCCATGGCTTTTCCTTTGCAT  2735

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2736  GGGTGTGCATACCGAGAGACAGGCAGCTTAGGAAAAACAACATAAGGAAGACTTAAAAGGATGCACTGATTTAC  2809

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2810  GACGTTTTTTGATGTTAGCCATTTTTTTGGAAATTGTTTTTTAAAGCAAAAGTTTTTTAAAAACATGGTTTATA  2883

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2884  GTTTTTCACTTACATATACTATTGTAAATACTTAGCAGAGTCTTAAGTTACTGTATAAAACATTTCATTGTGTT  2957

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 2958  TGAAGACATACTTATGGGTCTTGAGGTCTGGGTCCTAATACTTTTAAATAGTGTATTTATTATGTAAACTGAGG  3031

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3032  AGTGCCATTTAAAGTGTGAGGATTGCCTGAAAAGGTTTTGTTTCTTTCTTTTTTTTTTTTTTTTGAGATGGAGT  3105

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3106  CTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCACCGCCTCCCGAGTTCAAG  3179

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3180  TGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGACTACAGGCGCACGCCACCATGCCCAGCTAATTTTTGTAT  3253

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3254  TTTCAGTAGAGATGGGGTTTCACCGTGTTGACCAGGATGGTCTCCACCTCCTGACCTCGTGATCCGCCTGCCTC  3327

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3328  GGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCAGGTTTTGTTTCTTTAAGGATTAGCA  3401

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3402  CAAATGGCACCGTTGGGTTTTTCTTCATACAATTTCCAAAATAAATTCTGTACTCAGGTTGTTATATGATTTTC  3475

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3476  TGAGCTGAATAAGTTCAGGAGCAGATTATTAAGATCTGCCATTCTGAAACGCTGGTCTTTTTCTCCTTCCTATA  3549

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3550  GTGCACCATAAAATTCTGTTTGATCAGATTATATTACATACATTTTGGGGGAGTGGAGGGACATGAGTTAAGTA  3623

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3624  GCCCTTCATGTATTTATAATCTCTTTTCTACTGAATCAAATGACTTAGCCATGACCCTGAATGGACCTTGTTTT  3697

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3698  ACTTCAAGTTGAGATGTCTGCCTTTTATGAATTTGTATATGTGAATAGAGTTTGGGGGTTGCCAAAAATTGCAT  3771

Query 1876  --------------------------------------------------------------------------  1875
                                                                                      
Sbjct 3772  ACATTGTATGTAAGTAAAATTTTTTATGAAGTAGTCTGTCAAATTGTATCATAAAGTTTATTTTTCTTTTATAC  3845

Query 1876  -------------------------------------  1875
                                                 
Sbjct 3846  GTAAATCATTAAAAATAATCACATATTTTTTCCATAA  3882

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.