Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08070
- Subject:
- NR_028400.1
- Aligned Length:
- 3399
- Identities:
- 1537
- Gaps:
- 1733
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTACAGAAGTTTACAGGCAAGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAGAAGCTCCATCTGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GACTTTTATACTATAGAGGCAGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCATATCTCCTCTGCTCACATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCAGCTTCAGAGAGGTTGGG 740
Query 1 ------------------------ATGCCAG----------------GC----GGGGGTCCTCAGGGCGCCC-- 28
||||||| || ..|.|.||||| ||
Sbjct 741 AAGGCATTCCCACTATGTGTCTGGATGCCAGCAACTCAGAAATATTTGCCTTACAGAGACCTCA------CCAT 808
Query 29 ---CAGCCGCCGCCGGCGGCG------GC--------------------------GGCGTGAGCCAC-----CG 62
||||..|.||..|.|..| || ..|.||||..|| ||
Sbjct 809 TAACAGCATCTGCAAGAGAAGATTAAAGCACACGATTACTTTACTCACTGTGTAACACATGAGGAACATGGACG 882
Query 63 CG--------CAGGCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCC 128
.| .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AGATGGGAAAAAGGCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCC 956
Query 129 GGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCC 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCC 1030
Query 203 CAGGAGGGGTGTCTGGCGAGGAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CAGGAGGGGTGTCTGGCGAGGAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGC 1104
Query 277 CTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCA 1178
Query 351 CTTTGGGATTCAGCTCAGAGGTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CTTTGGGATTCAGCTCAGAGGTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTG 1252
Query 425 GGTGGCAGCAAGAGTTTGCAGCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGAT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GGTGGCAGCAAGAGTTTGCAGCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGAT 1326
Query 499 GGAGCAAGGCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 GGAGCAAGGCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTG 1400
Query 573 TGGCCCTGAGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TGGCCCTGAGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCT 1474
Query 647 CGCTTGGCTCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 CGCTTGGCTCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAG 1548
Query 721 AGCCCCCAGGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCAGCC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1549 AGCCCCCAGGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCC 1622
Query 795 CTTCAGTCTCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CTTCAGTCTCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTG 1696
Query 869 ACATGCATTCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 ACATGCATTCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGT 1770
Query 943 GATGGGAGCAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 GATGGGAGCAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGA 1844
Query 1017 CTGCCTGCTGAGAAACCGGAGGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATG 1090
|||||||||||||||||||||||||||||
Sbjct 1845 CTGCCTGCTGAGAAACCGGAGGCAGATGG--------------------------------------------- 1873
Query 1091 CAGTTGAGAATGATGATTATGATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATC 1164
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 -------------------------AGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATC 1922
Query 1165 AGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCA 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 AGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCA 1996
Query 1239 GGCTGCCTTGCGCCGTGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGA 1312
||||||||||||||||||||||||||||||| ||||.|
Sbjct 1997 GGCTGCCTTGCGCCGTGGGGCCACTCAGCAG----------------------------TGAGTA--------- 2033
Query 1313 GGC-TGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAA 1385
| |||| |.|| ||| .||..|..||.||| .|.||||||
Sbjct 2034 --CTTGTT-------ATTG-TCA---------CCATTTTCCCCTCA------------TGTTTCTTC------- 2069
Query 1386 GCAGCAGCTACAGAAAGAAATCGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGA 1459
|||| .||..||||| ||| ||.|| |.||.|||||
Sbjct 2070 -------CTAC--------CTCTCAGCTC-CCA------------------------CATAG-TGAAGAGCTG- 2101
Query 1460 GAAGGGAAATAGAGGAGCAAGAGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTG 1533
.||||||| ..|||.|.| || ||||| .||| |.||..
Sbjct 2102 ----------GGAGGAGC-TTAGCTGTA-------------------GA---GACCC--TTGG-----CTGCCT 2135
Query 1534 TCCCTGGGTCAGCTGCAGGAGGTCAGCAAGG--CCTT----------GCAGGACACCCTGGCCTCAGCCGGTCA 1595
|.|||||| |||| |||| |.||| ||| .
Sbjct 2136 TTCCTGGG-------------------AAGGGCCCTTTGTTGGTTGGGAAGG------TGG------------G 2172
Query 1596 GATTCCCTTCCATGCAGAGCCACCGGAAA----CCATAAGGAGC------CTCCAGGAAAGAATAAAATCCCTC 1659
|||| |||| |||||..| ||.| ||||..||..| |||.| |||||||
Sbjct 2173 GATT--CTTC----CAGAGTGA---GAGATGGCCCATGTGGGTCATGCATCTCTA-GAAAGAA----------- 2225
Query 1660 AACT----TGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTGAGAA-ATTCTGCAGCACCCTGAGGAAG 1728
.||| ||.||||| ||.| |||.||||| .||||..||
Sbjct 2226 GACTTTTCTGCCACTT---GACA-------------------GAGAGAGAACCTTCTCAAG------------- 2264
Query 1729 AAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAAATGCATGCCATATCAGGAAACCATTT 1802
||.||| |||||.|||..||.| ||.|||.|
Sbjct 2265 --------------------------------------TGCAGC-----TGCATCCCAGGTCTG--AAGCATCT 2293
Query 1803 CT--GGACGGCTAAAGACC--TCACCGAGGAGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGA--C 1870
|| ||| ||..||| || || |||||| |||.||.| .
Sbjct 2294 CTTGGGA-----AACTACCCTTC-----------TA-------------------AGAAGG--TGGGGGTAATT 2330
Query 1871 TCCTC------AGCAAGCTGTTGGTGT----TGAGTTCCAGGAATGTCAAA--AAGCTGGGAAGTGTTAAAGAA 1932
||||| ||..||| ||||||| ||| |||.| |||| .||| ||
Sbjct 2331 TCCTCTTGTTGAGGCAGC--TTGGTGTCCTGTGA------------TCATATTAAGC------CTGT-----AA 2379
Query 1933 GATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGAAACAAGTGTGAAGGAAAAT----- 2001
||| .|||||| |||..| |||.|| |.|.||.| |.||||||
Sbjct 2380 GAT--AAACAGA-------------TGGTCC------------CCTCTG-ACCGAGCG---ATGAAAATCCATC 2422
Query 2002 ---------ACTATG-----AAGTACATG-GAAACACTTAAGAATAAACTGTG-CAGCTGCAAGTGTCCACT-- 2057
|||.|| .||..|.|| |.||||.||...|.| |||| ||.| ||||..||..||
Sbjct 2423 CTCCTCCTAACTCTGCCCTCCAGCTCCTGAGCAACATTTGCTATT----TGTGTCACC--CAAGGCTCTTCTGA 2490
Query 2058 GCTTGGGAAAGTGTGGGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAGGAAGCCA 2131
|.||.|.||..|.|.|..|||.| |.|..|||| ||.||||||.|.||...|.|||.||
Sbjct 2491 GATTAGTAATATATAGAGAGCAG---TTGCTGCTT--------CTAATCCAGTGGCTTGTGGTCCTGG------ 2547
Query 2132 GGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCCCCCCAGG 2205
|||..||| .||.||.|||||||
Sbjct 2548 --------CTGCATGT----------------TTGAATAACTTAGA---------------------------- 2569
Query 2206 CTCCACTCCGAGGATAAAAGGAAGACCCCTTTGAAGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAAGTG 2279
Sbjct 2570 -------------------------------------------------------------------------- 2569
Query 2280 TGAAGACATAGGCAAGAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAGATC 2353
Sbjct 2570 -------------------------------------------------------------------------- 2569
Query 2354 TCATTCAGTCTCTCAGGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAGCCA 2427
Sbjct 2570 -------------------------------------------------------------------------- 2569
Query 2428 GCAAAGGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC 2496
Sbjct 2570 --------------------------------------------------------------------- 2569
