Nucleotide Global Alignment

Description

• Query: ccsbBroad304_08125
• Subject: NM_001079902.1
• Aligned Length: 1861
• Identities: 1386
• Gaps: 230

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGGGATAGGGATGTCTTTATTGCTACAGTTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGGGCCGAAGCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCACCCCCAGCTCTTCAGTCTTCAGGAGG  148

Query    1  --------ATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGCCTGGCCCAGCCCCGACTCCTTTCTGGG  66
                    ||||||||||..||.||||||||||||..|||||||||||..||.||||||.|.|||.||||||||
Sbjct  149  AAGAACCGATGCTGGAACAGCGCTGCAGGGGCCCCACGGCCATGGGCCCAGCTCAGCCCTGGCTCTTTTCTGGG  222

Query   67  CCCTCCCAGGAGTCACCCCAGACCCTGGGGAAGGAGTCCCGCGGGCTGAGGCAACAAGGCACGTCAGTGGCCCA  140
            ||||||||||||||..|||||.||     ||       |.|.|||.|||||.|.||.||||..|||   ||.||
Sbjct  223  CCCTCCCAGGAGTCCTCCCAGCCC-----GA-------CAGAGGGTTGAGGTACCAGGGCAAATCA---GCTCA  281

Query  141  GTCTGGTGCCCAAGCCCCAGGCAGGGCCCATCGCTGTGCCCACTGTCGAAGGCACTTCCCTGGCTGGGTGGCTC  214
            |.|..|.|.||||.|||||||||.||.||||||.||||||||||||||.|.||.||||||.|||||||||||.|
Sbjct  282  GCCAAGAGGCCAAACCCCAGGCAAGGTCCATCGTTGTGCCCACTGTCGGAAGCGCTTCCCGGGCTGGGTGGCCC  355

Query  215  TGTGGCTTCACACCCGCCGGTGCCAGGCCCGGCTGCCCTTGCCCTGCCCTGAGTGTGGCCGTCGCTTTCGCCAT  288
            ||||||||||..|.||.||||||||||||||||||||..|||||||||.|||.||...||..|||||||||||.
Sbjct  356  TGTGGCTTCATGCTCGGCGGTGCCAGGCCCGGCTGCCTCTGCCCTGCCATGAATGCAACCAGCGCTTTCGCCAC  429

Query  289  GCCCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGCCACCCCAGACCTGGGCTTTGCCTGCCACCTCTG  362
            ||||||||||||||.|||||.|..|||||.||||||.||||...|||.||||||||.||...|||||||||.||
Sbjct  430  GCCCCCTTCTTAGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCCGACCTGGGTTTCATCTGCCACCTATG  503

Query  363  TGGGCAGAGCTTCCGAGGCTGGGTGGCCCTGGTTCTGCATCTGCGGGCCCATTCAGCTGCAAAGCGGCCCATCG  436
            ||||||.|||||||||||.|||||.|||||||||||||||||||||||.||.||||||.||||||||||||||.
Sbjct  504  TGGGCATAGCTTCCGAGGATGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCAGCTTCAAAGCGGCCCATCA  577

Query  437  CTTGTCCCAAATGCGAGAGACGCTTCTGGCGACGAAAGCAGCTTCGAGCTCATCTGCGGCGGTGCCACCCTCCC  510
            ||||.||..|||||||.||||||||||||||||.|||.||||||||||||||||||||..|||||||.||.||.
Sbjct  578  CTTGCCCTGAATGCGACAGACGCTTCTGGCGACAAAAACAGCTTCGAGCTCATCTGCGAAGGTGCCAGCCCCCT  651

Query  511  GCCCCGGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAGTGGGACCAGCTAGTTGCCCA  584
            |.|||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.||||..||
Sbjct  652  GTCCCTGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAATGGGACCAACTGGTTGTTCA  725

Query  585  CAAGCGGGTGCACGTAGCTGAGGCCCTGGAGGAGGCCGCAGCCAAGGCTCTGGGGCCCCGGCCCA-GGGGCCGC  657
            |||||||||||||||.|||||||||.||||||||||.||||||||.||.|||||.||.| ||||| |.||.||.
Sbjct  726  CAAGCGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAGCAGCCAAAGCCCTGGGTCCTC-GCCCACGAGGACGT  798

Query  658  CCCGCGGTGACCGCCCCCCGGCCCGGTGGAGATGCCGTCGACCGCCCCTTCCAGTGTGCCTGTTGTGGCAAGCG  731
            ||||      |.||.|||.||||.||||||||.||.||.|||||||||||||||||||||||.||.||||||||
Sbjct  799  CCCG------CAGCTCCCAGGCCTGGTGGAGACGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCG  866

Query  732  CTTCCGGCACAAGCCCAACTTGATCGCTCACCGCCGCGTGCACACGGGCGAGCGGCCCCACCAGTGCCCCGAGT  805
            .|||||.|||||||||||..|||||||.|||||||||||||||||.||.|||||.||.|||||||||||.||||
Sbjct  867  TTTCCGCCACAAGCCCAATCTGATCGCCCACCGCCGCGTGCACACTGGTGAGCGACCACACCAGTGCCCAGAGT  940

Query  806  GCGGGAAGCGCTTTACCAATAAGCCCTATCTGACTTCGCACCGGCGCATCCACACCGGCGAGAAGCCCTACCCG  879
            ||||||||||.||.|||||.||||||||.|||||.||||||||||||||.||.||||||||||||||||||||.
Sbjct  941  GCGGGAAGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGGCGCATACATACCGGCGAGAAGCCCTACCCA  1014

Query  880  TGCAAAGAGTGCGGCCGCCGCTTCCGGCACAAACCCAACCTGCTGTCTCACAGCAAGATTCACAAGCGATCCGA  953
            ||||..|||||.||||||||||||||.|||||||||||||||.||||.||||||||.||.||||||||.|..||
Sbjct 1015  TGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGCAAAATCCACAAGCGCTTGGA  1088

Query  954  GGGGTCGGCCCAGGCCGCCCCCGGCCCGGGGAGCCCCCAGCTGCCAGCCGGCCCCCAGGAGTCCGCGGCCGAGC  1027
            ||..||.||.|||||.|||||...|||.|.|||.|.||||.|                     .||.||.||||
Sbjct 1089  GGTCTCAGCGCAGGCTGCCCCACACCCCGAGAGTCACCAGAT---------------------TGCAGCAGAGC  1141

Query 1028  CCACCCCGGCGGTACCTCTGAAACCGGCCCAGGAGCCGCCGCCAGGGG-CCCCGCCAGAGCACCCGCAGGACCC  1100
            |.|      .||.||      ||||.||.|..|.|..||| ||.|||| ||||||             ||||||
Sbjct 1142  CTA------TGGCAC------AACCTGCACTTGGGGTGCC-CCTGGGGTCCCCGC-------------GGACCC  1189

Query 1101  GATCGAAGCCCCC--CCCTCCCTCTACAGCTGCGACGACTGCGGCAGGAGCTTCCGGCTGGAGCGCTTCCTGCG  1172
            .|.|..||.|.||  |.|| |||..|.||||||..||||||||||.|.||||||||||||||||||||||||||
Sbjct 1190  CAGCTGAGGCACCTGCGCT-CCTGCATAGCTGCTCCGACTGCGGCCGCAGCTTCCGGCTGGAGCGCTTCCTGCG  1262

Query 1173  GGCCCACCAGCGGCAGCACACCGGGGAGCGGCCCTTCACCTGCGCCGAGTGCGGGAAGAACTTCGGCAAGAAGA  1246
            |...||||||.||||||||||.||||||.||||||||.|||||.|.|||||.||.|||||||||||||||||||
Sbjct 1263  GCTACACCAGAGGCAGCACACAGGGGAGAGGCCCTTCGCCTGCACAGAGTGTGGCAAGAACTTCGGCAAGAAGA  1336

Query 1247  CGCACCTGGTGGCGCACTCGCGCGTGCACTCCGGCGAGCGGCCCTTCGCCTGCGAGGAGTGCGGCCGCCGCTTC  1320
            |||||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||.||.|||||.|||
Sbjct 1337  CGCACCTGGTGGCGCACTCACGCGTGCACTCCGGCGAACGTCCCTTCGCCTGCGAGGAGTGTGGTCGCCGTTTC  1410

Query 1321  TCCCAGGGCAGCCATCTGGCGGCGCATCGGCGCGACCACGCCCCCGATCGGCCCTTCGTGTGTCCCGACTGCGG  1394
            ||.|||||||||||.|||||.||.||.|||||.|||||.||.||.||..|||||||||||||.||.||||||||
Sbjct 1411  TCACAGGGCAGCCACCTGGCAGCCCACCGGCGAGACCATGCACCAGAGAGGCCCTTCGTGTGCCCGGACTGCGG  1484

Query 1395  CAAGGCCTTCCGCCACAAACCCTACCTGGCGGCGCACCGGCGCATCCACACCGGCGAGAAGCCCTACGTCTGCC  1468
            ||||||.|||||||||||.|||||||||||.||||||||.|||||||||||.||||||||.|||||.||.||.|
Sbjct 1485  CAAGGCTTTCCGCCACAAGCCCTACCTGGCTGCGCACCGACGCATCCACACAGGCGAGAAACCCTATGTGTGTC  1558

Query 1469  CCGACTGCGGCAAAGCCTTCAGCCAGAAGTCCAACCTGGTGTCGCACCGGCGCATCCACACGGGCGAGCGGCCC  1542
            |||||||.||||||||.|||||.||||||||||||||||||||.|||||||||||||||||.||||||||||||
Sbjct 1559  CCGACTGTGGCAAAGCTTTCAGTCAGAAGTCCAACCTGGTGTCCCACCGGCGCATCCACACAGGCGAGCGGCCC  1632

Query 1543  TACGCCTGTCCCGACTGCGACCGCAGCTTCAGCCAGAAGTCCAACCTCATCACCCACCGCAAGAGCCACATCCG  1616
            ||||||||.||||||||.||.||.||||||||.|||||||||||.||.|||||.|||||.||||||||||||||
Sbjct 1633  TACGCCTGCCCCGACTGTGATCGTAGCTTCAGTCAGAAGTCCAATCTTATCACACACCGGAAGAGCCACATCCG  1706

Query 1617  GGACGGCGCCTTCTGCTGTGCCATCTGTGGCCAGACCTTCGACGACGAGGAGAGACTCCTGGCCCACCAGAAGA  1690
            |||.|||||||||||.|||||||||||||||||||||||.||.||||||||..|||||.||...||||||||||
Sbjct 1707  GGATGGCGCCTTCTGTTGTGCCATCTGTGGCCAGACCTTTGATGACGAGGACCGACTCTTGATGCACCAGAAGA  1780

Query 1691  AGCACGATGTC  1701
            ||||.||||.|
Sbjct 1781  AGCATGATGCC  1791