Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08137
Subject:
XM_017026721.1
Aligned Length:
2151
Identities:
1931
Gaps:
219

Alignment

Query    1  ATGAGCGTGGACAAAGCTGAGCTATGCGGGTCTCTGCTCACCTGGTTACAGACGTTCCACGTTCCGTCTCCCTG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGCCAGCCCTCAGGACCTGAGCAGCGGCCTTGCCGTAGCCTATGTGCTGAACCAGATAGACCCCTCCTGGTTCA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACGAGGCATGGCTCCAGGGCATCTCGGAAGATCCAGGTCCCAACTGGAAGCTGAAGGTCAGCAATCTGAAGATG  222
                                                                                   |||
Sbjct    1  -----------------------------------------------------------------------ATG  3

Query  223  GTCTTACGGAGCCTAGTAGAGTACTCCCAGGATGTCCTGGCGCATCCTGTGTCAGAAGAGCATCTCCCAGATGT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    4  GTCTTACGGAGCCTAGTAGAGTACTCCCAGGATGTCCTGGCGCATCCTGTGTCAGAAGAGCATCTCCCAGATGT  77

Query  297  GAGCCTCATTGGAGAGTTCTCAGACCCGGCAGAGCTCGGCAAGCTGCTTCAGCTGGTGCTGGGCTGTGCCATCA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   78  GAGCCTCATTGGAGAGTTCTCAGACCCGGCAGAGCTCGGCAAGCTGCTTCAGCTGGTGCTGGGCTGTGCCATCA  151

Query  371  GTTGCGAGAAAAAGCAGGACCACATCCAGAGAATCATGACGCTGGAAGAATCGGTTCAGCATGTGGTGATGGAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  GTTGCGAGAAAAAGCAGGACCACATCCAGAGAATCATGACGCTGGAAGAATCGGTTCAGCATGTGGTGATGGAA  225

Query  445  GCCATCCAAGAGCTCATGACCAAAGACACTCCTGACTCCCTGTCACCAGAGACGTATGGCAACTTTGACAGCCA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  226  GCCATCCAAGAGCTCATGACCAAAGACACTCCTGACTCCCTGTCACCAGAGACGTATGGCAACTTTGACAGCCA  299

Query  519  GTCCCGCAGGTACTATTTCCTAAGTGAGGAGGCTGAGGAGGGGGACGAATTACAGCAGCGCTGTCTGGATCTGG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GTCCCGCAGGTACTATTTCCTAAGTGAGGAGGCTGAGGAGGGGGACGAATTACAGCAGCGCTGTCTGGATCTGG  373

Query  593  AGCGGCAGCTGATGCTCCTGTCAGAGGAGAAGCAGAGCCTGGCGCAAGAGAATGCAGGGCTGCGGGAGCGGATG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  374  AGCGGCAGCTGATGCTCCTGTCAGAGGAGAAGCAGAGCCTGGCGCAAGAGAATGCAGGGCTGCGGGAGCGGATG  447

Query  667  GGCCGGCCTGAAGGCGAGGGTACCCCAGGTCTCACTGCCAAGAAGCTGCTGCTGCTGCAATCCCAGCTGGAGCA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  448  GGCCGGCCTGAAGGCGAGGGTACCCCAGGTCTCACTGCCAAGAAGCTGCTGCTGCTGCAATCCCAGCTGGAGCA  521

Query  741  GTTGCAGGAGGAGAACTTCAGGCTGGAGAGTGGCAGGGAGGATGAGCGCCTGCGCTGTGCCGAGCTGGAGAGGG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  522  GTTGCAGGAGGAGAACTTCAGGCTGGAGAGTGGCAGGGAGGATGAGCGCCTGCGCTGTGCCGAGCTGGAGAGGG  595

Query  815  AGGTTGCGGAGCTGCAGCACCGGAACCAGGCGCTGACTAGCCTGGCCCAGGAGGCACAGGCCCTGAAGGATGAG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  596  AGGTTGCGGAGCTGCAGCACCGGAACCAGGCGCTGACTAGCCTGGCCCAGGAGGCACAGGCCCTGAAGGATGAG  669

Query  889  ATGGATGAACTACGGCAGTCTTCGGAGCGTGCTGGGCAGCTGGAGGCCACGCTGACCAGTTGCCGGCGCCGCTT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  670  ATGGATGAACTACGGCAGTCTTCGGAGCGTGCTGGGCAGCTGGAGGCCACGCTGACCAGTTGCCGGCGCCGCTT  743

Query  963  GGGCGAGCTGAGGGAGCTGCGGCGGCAGGTGCGGCAGCTGGAGGAACGCAACGCCGGCCACGCCGAGCGCACGC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  744  GGGCGAGCTGAGGGAGCTGCGGCGGCAGGTGCGGCAGCTGGAGGAACGCAACGCCGGCCACGCCGAGCGCACGC  817

Query 1037  GACAACTGGAGGATGAGCTACGCCGAGCGGGCTCCCTGCGCGCCCAGCTGGAGGCGCAGCGGCGGCAGGTGCAG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  818  GACAACTGGAGGATGAGCTACGCCGAGCGGGCTCCCTGCGCGCCCAGCTGGAGGCGCAGCGGCGGCAGGTGCAG  891

Query 1111  GAACTGCAGGGCCAGCGGCAGGAGGAGGCCATGAAGGCCGAGAAATGGCTATTTGAATGCCGCAACCTGGAGGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  892  GAACTGCAGGGCCAGCGGCAGGAGGAGGCCATGAAGGCCGAGAAATGGCTATTTGAATGCCGCAACCTGGAGGA  965

Query 1185  AAAGTATGAGTCGGTGACAAAGGAGAAGGAGCGGCTGTTGGCGGAGCGGGACTCCTTGCGGGAGGCCAATGAGG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  966  AAAGTATGAGTCGGTGACAAAGGAGAAGGAGCGGCTGTTGGCGGAGCGGGACTCCTTGCGGGAGGCCAATGAGG  1039

Query 1259  AGCTGCGCTGCGCCCAGCTGCAGCCGCGGGGGTTGACCCAGGCCGATCCCTCACTGGATCCCACCTCCACACCC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040  AGCTGCGCTGCGCCCAGCTGCAGCCGCGGGGGTTGACCCAGGCCGATCCCTCACTGGATCCCACCTCCACACCC  1113

Query 1333  GTGGATAACTTAGCCGCAGAGATCCTGCCTGCGGAGCTCAGGGAGACGCTCCTGCGGCTTCAGCTGGAGAACAA  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114  GTGGATAACTTAGCCGCAGAGATCCTGCCTGCGGAGCTCAGGGAGACGCTCCTGCGGCTTCAGCTGGAGAACAA  1187

Query 1407  GCGGCTGTGCAGGCAGGAGGCGGCCGACCGGGAGCGGCAGGAGGAGCTGCAGCGCCAGCTGGAGGATGCCAACC  1480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1188  GCGGCTGTGCAGGCAGGAGGCGGCCGACCGGGAGCGGCAGGAGGAGCTGCAGCGCCACCTGGAGGATGCCAACC  1261

Query 1481  GCGCGCGCCACGGGTTGGAGACGCAGCACCGGCTGAACCAGCAGCAGCTATCCGAGCTGCGGGCCCAGGTGGAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262  GCGCGCGCCACGGGTTGGAGACGCAGCACCGGCTGAACCAGCAGCAGCTATCCGAGCTGCGGGCCCAGGTGGAG  1335

Query 1555  GACCTGCAGAAAGCCCTGCAGGAGCAGGGGGGCAAGACTGAAGATTCCATTTTGCTGAAAAGGAAGCTGGAGGA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336  GACCTGCAGAAAGCCCTGCAGGAGCAGGGGGGCAAGACTGAAGATTCCATTTTGCTGAAAAGGAAGCTGGAGGA  1409

Query 1629  ACATTTGCAGAAGCTTCATGAGGCAGATCTGGAGTTGCAGAGGAAGCGGGAGTACATTGAGGAGCTGGAGCCAC  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410  ACATTTGCAGAAGCTTCATGAGGCAGATCTGGAGTTGCAGAGGAAGCGGGAGTACATTGAGGAGCTGGAGCCAC  1483

Query 1703  CCACTGACAGCAGCACAGCCCGGCGGATCGAGGAGCTGCAGCATAACTTGCAGAAGAAGGACGCGGACTTGCGG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484  CCACTGACAGCAGCACAGCCCGGCGGATCGAGGAGCTGCAGCATAACTTGCAGAAGAAGGACGCGGACTTGCGG  1557

Query 1777  GCCATGGAGGAGCGATACCGCCGCTACGTGGACAAGGCCCGCATGGTCATGCAGACCATGGAACCCAAGCAGCG  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558  GCCATGGAGGAGCGATACCGCCGCTACGTGGACAAGGCCCGCATGGTCATGCAGACCATGGAACCCAAGCAGCG  1631

Query 1851  GCCAGCTGCGGGGGCACCTCCAGAACTCCATTCCCTGAGGACACAGCTCCGAGAACGGGATGTCCGCATCCGAC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632  GCCAGCTGCGGGGGCACCTCCAGAACTCCATTCCCTGAGGACACAGCTCCGAGAACGGGATGTCCGCATCCGAC  1705

Query 1925  ACCTGGAGATGGACTTTGAGAAAAGCCGAAGTCAGCGGGAGCAGGAAGAAAAGCTGCTCATCAGTGCCTGGTAT  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706  ACCTGGAGATGGACTTTGAGAAAAGCCGAAGTCAGCGGGAGCAGGAAGAAAAGCTGCTCATCAGTGCCTGGTAT  1779

Query 1999  AATATGGGCATGGCCTTGCAGCAGCGAGCTGGGGAGGAGCGGGCGCCTGCCCATGCCCAGTCATTCCTGGCACA  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780  AATATGGGCATGGCCTTGCAGCAGCGAGCTGGGGAGGAGCGGGCGCCTGCCCATGCCCAGTCATTCCTGGCACA  1853

Query 2073  GCAGCGGCTGGCAACCAATTCTCGCCGTGGACCCTTGGGACGCCTGGCATCTCTGAACCTTCGCCCCACTGACA  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854  GCAGCGGCTGGCAACCAATTCTCGCCGTGGACCCTTGGGACGCCTGGCATCTCTGAACCTTCGCCCCACTGACA  1927

Query 2147  AGCAC  2151
            |||||
Sbjct 1928  AGCAC  1932

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.