Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08160
Subject:
NM_001353892.2
Aligned Length:
2070
Identities:
1865
Gaps:
204

Alignment

Query    1  ATGGTGGAGGCCATAGTGGAGTTTGACTACCAGGCCCAGCACGATGATGAGCTGACGATCAGCGTGGGTGAAAT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGTGGAGGCCATAGTGGAGTTTGACTACCAGGCCCAGCACGATGATGAGCTGACGATCAGCGTGGGTGAAAT  74

Query   75  CATCACCAACATCAGGAAGGAGGATGGAGGCTGGTGGGAGGGACAGATCAACGGCAGGAGAGGTTTGTTCCCTG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CATCACCAACATCAGGAAGGAGGATGGAGGCTGGTGGGAGGGACAGATCAACGGCAGGAGAGGTTTGTTCCCTG  148

Query  149  ACAACTTTGTAAGAGAAATAAAGAAAGAGATGAAGAAAGACCCTCTCACCAACAAAGCTCCAGAAAAGCCCCTG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACAACTTTGTAAGAGAAATAAAGAAAGAGATGAAGAAAGACCCTCTCACCAACAAAGCTCCAGAAAAGCCCCTG  222

Query  223  CACGAAGTGCCCAGTGGAAACTCTTTGCTGTCTTCTGAAACGATTTTAAGAACCAATAAGAGAGGCGAGCGACG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CACGAAGTGCCCAGTGGAAACTCTTTGCTGTCTTCTGAAACGATTTTAAGAACCAATAAGAGAGGCGAGCGACG  296

Query  297  GAGGCGCCGGTGCCAGGTGGCATTCAGCTACCTGCCCCAGAATGACGATGAACTTGAGCTGAAAGTTGGCGACA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAGGCGCCGGTGCCAGGTGGCATTCAGCTACCTGCCCCAGAATGACGATGAACTTGAGCTGAAAGTTGGCGACA  370

Query  371  TCATAGAGGTGGTAGGAGAGGTAGAGGAAGGATGGTGGGAAGGTGTTCTCAACGGGAAGACTGGAATGTTTCCT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCATAGAGGTGGTAGGAGAGGTAGAGGAAGGATGGTGGGAAGGTGTTCTCAACGGGAAGACTGGAATGTTTCCT  444

Query  445  TCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATTTCCCAGGATGAGCAGCTATCCAAGTC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATTTCCCAGGATGAGCAGCTATCCAAGTC  518

Query  519  A-------------------------------------------------------------------------  519
            |                                                                         
Sbjct  519  AAGAAAGACTACCTTTGAAGGGACAATTCTGTACCGAGCTGCACCGGGAAAGACGGAGGGCCACAGACGCTATT  592

Query  520  --AGTTTAAGGGAAACCACAGGCTCCGAGAGTGATGGGGGTGACTCAAGCAGCACCAAGTCTGAAGGTGCCAAC  591
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACAGTTTAAGGGAAACCACAGGCTCCGAGAGTGATGGGGGTGACTCAAGCAGCACCAAGTCTGAAGGTGCCAAC  666

Query  592  GGGACAGTGGCAACTGCAGCAATCCAGCCCAAGAAAGTTAAGGGAGTGGGCTTTGGAGACATTTTCAAAGACAA  665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGGACAGTGGCAACTGCAGCAATCCAGCCCAAGAAAGTTAAGGGAGTGGGCTTTGGAGACATTTTCAAAGACAA  740

Query  666  GCCAATCAAACTAAGACCAAGGTCAATTGAAGTAGAAAATGACTTTCTGCCGGTAGAAAAGACTATTGGGAAGA  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCCAATCAAACTAAGACCAAGGTCAATTGAAGTAGAAAATGACTTTCTGCCGGTAGAAAAGACTATTGGGAAGA  814

Query  740  AGTTACCTGCAACTACAGCAACTCCAGACTCATCAAAAACAGAAATGGACAGCAGGACAAAGAGCAAGGATTAC  813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGTTACCTGCAACTACAGCAACTCCAGACTCATCAAAAACAGAAATGGACAGCAGGACAAAGAGCAAGGATTAC  888

Query  814  TGCAAAGTAATATTTCCATATGAGGCACAGAATGATGATGAATTGACAATCAAAGAAGGAGATATAGTCACTCT  887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TGCAAAGTAATATTTCCATATGAGGCACAGAATGATGATGAATTGACAATCAAAGAAGGAGATATAGTCACTCT  962

Query  888  CATCAATAAGGACTGCATCGACGTAGGCTGGTGGGAAGGAGAGCTGAACGGCAGACGAGGCGTGTTCCCCGATA  961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CATCAATAAGGACTGCATCGACGTAGGCTGGTGGGAAGGAGAGCTGAACGGCAGACGAGGCGTGTTCCCCGATA  1036

Query  962  ACTTCGTGAAGTTACTTCCACCGGACTTTGAAAAGGAAGGGAATAGACCCAAGAAGCCACCGCCTCCATCCGCT  1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACTTCGTGAAGTTACTTCCACCGGACTTTGAAAAGGAAGGGAATAGACCCAAGAAGCCACCGCCTCCATCCGCT  1110

Query 1036  CCTGTCATCAAACAAGGGGCAGGCACCACTGAGAGAAAACATGAAATTAAAAAGATACCTCCTGAAAGACCAGA  1109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCTGTCATCAAACAAGGGGCAGGCACCACTGAGAGAAAACATGAAATTAAAAAGATACCTCCTGAAAGACCAGA  1184

Query 1110  AATGCTTCCAAACAGAACAGAAGAAAAAGAAAGACCAGAGAGAGAGCCAAAACTGGATTTACAGAAGCCCTCCG  1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AATGCTTCCAAACAGAACAGAAGAAAAAGAAAGACCAGAGAGAGAGCCAAAACTGGATTTACAGAAGCCCTCCG  1258

Query 1184  TTCCTGCCATACCGCCAAAAAAGCCTCGGCCACCTAAGACCAATTCTCTCAGCAGACCTGGCGCACTGCCCCCG  1257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TTCCTGCCATACCGCCAAAAAAGCCTCGGCCACCTAAGACCAATTCTCTCAGCAGACCTGGCGCACTGCCCCCG  1332

Query 1258  AGAAGGCCGGAGAGACCGGTGGGTCCGCTGACACACACCAGGGGTGACAGTCCAAAGATTGACTTGGCCGGCAG  1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGAAGGCCGGAGAGACCGGTGGGTCCGCTGACACACACCAGGGGTGACAGTCCAAAGATTGACTTGGCCGGCAG  1406

Query 1332  TTCGCTATCTGGCATCCTGGACAAAGATCTCTCGGACCGCAGCAATGACATTGACTTAGAAGGTTTTGACTCCG  1405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TTCGCTATCTGGCATCCTGGACAAAGATCTCTCGGACCGCAGCAATGACATTGACTTAGAAGGTTTTGACTCCG  1480

Query 1406  TGGTATCATCTACTGAGAAACTCAGTCATCCGACCACAAGCAGACCAAAAGCTACAGGGAGGCGGCCTCCGTCC  1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGTATCATCTACTGAGAAACTCAGTCATCCGACCACAAGCAGACCAAAAGCTACAGGGAGGCGGCCTCCGTCC  1554

Query 1480  CAGTCCCTCACATCTTCATCCCTTTCAAGCCCTGATATCTTCGACTCCCCAAGTCCCGAAGAGGATAAGGAGGA  1553
            |||||||||||||||                                                           
Sbjct 1555  CAGTCCCTCACATCT-----------------------------------------------------------  1569

Query 1554  ACACATTTCACTTGCGCACAGAGGAGTGGACGCGTCAAAGAAAACTTCCAAGACTGTTACCATATCCCAAGTGT  1627
                                                                                  ||||
Sbjct 1570  ----------------------------------------------------------------------GTGT  1573

Query 1628  CTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGGCAGCAGGTGGCGGTGGGCCAGCCCCTCTGTCC  1701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574  CTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGGCAGCAGGTGGCGGTGGGCCAGCCCCTCTGTCC  1647

Query 1702  TCAGCGGTGCCCTCCCCCCTGTCATCCTCTTTGGGAACAGCTGGACACAGAGCCAACTCCCCGTCTCTGTTCGG  1775
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648  TCAGCGGCGCCCTCCCCCCTGTCATCCTCTTTGGGAACAGCTGGACACAGAGCCAACTCCCCGTCTCTGTTCGG  1721

Query 1776  CACGGAAGGAAAACCAAAGATGGAGCCTGCGGCCAGCAGCCAGGCGGCCGTGGAGGAGCTAAGGACACAGGTCC  1849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722  CACGGAAGGAAAACCAAAGATGGAGCCTGCGGCCAGCAGCCAGGCGGCCGTGGAGGAGCTAAGGACACAGGTCC  1795

Query 1850  GCGAGCTGAGGAGCATCATCGAGACCATGAAGGACCAGCAGAAACGAGAGATTAAACAGTTATTGTCTGAGTTG  1923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796  GCGAGCTGAGGAGCATCATCGAGACCATGAAGGACCAGCAGAAACGAGAGATTAAACAGTTATTGTCTGAGTTG  1869

Query 1924  GATGAAGAGAAGAAAATCCGGCTTCGGTTGCAGATGGAAGTGAACGACATAAAGAAAGCTCTACAATCAAAA  1995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870  GATGAAGAGAAGAAAATCCGGCTTCGGTTGCAGATGGAAGTGAACGACATAAAGAAAGCTCTACAATCAAAA  1941

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