Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08160
- Subject:
- NR_110969.1
- Aligned Length:
- 4905
- Identities:
- 1621
- Gaps:
- 3079
Alignment
Query 1 ----ATGGTGGAGG---CCATAGT----GGAGTTTGACT-AC-CAGGCCCAGCACGATGATGAGCTGAC-GATC 60
|.|.|.|.|| .||.||| ||| ||| || |..||||.|.| |.||.||| |..|
Sbjct 1 AGAAAGGCTTGCGGTTCTCAGAGTGCACGGA-----ACTCACTCCTGCCCGGGA-------GTGCAGACAGTCC 62
Query 61 AGCGTGGGTGAAATCATCA---CCAACATCAGGAAGGAGGATGGAGGCTGGTGGGAGGGACAGATCAACGGCAG 131
|.| .|||.|||.|| ||.||..|| .||.||||||..|..|| ||| .|||.|.|..
Sbjct 63 ACC-----AGAAGTCACCATTCCCCACTCCA-----CAGAATGGAGCTTTCTG-------CAG-CCAAAGCCCC 118
Query 132 GAGAGGTTTGTTCCCTGACA-ACTT---TGTAAGAGAAATAAAGAAAGAGATGAAGAAAGACCCTCTCACCAAC 201
.|| ||..||| |||| ||..||.||||||||||||||.|||||||||||.|.||||.|.|||
Sbjct 119 AAG----------CCCCACAGACTTGCCTGAGAGTGAAATAAAGAAAGATATGAAGAAAGATCTTCTCTCTAAC 182
Query 202 AAAGCTCCAGAAAAGCCCCTGCACGAAGTGCCCAGTGGAAACTCTTTGCTGTCTTCTGAAACGATTTTAAGAAC 275
|||||||||||.||.|||.|||||||.||..|||||||||||.||.||||.|||||||||||.|||||||||||
Sbjct 183 AAAGCTCCAGAGAAACCCATGCACGATGTATCCAGTGGAAACGCTCTGCTTTCTTCTGAAACCATTTTAAGAAC 256
Query 276 CAATAAGAGAGGCGAGCGACGGAGGCGCCGGTGCCAGGTGGCATTCAGCTACCTGCCCCAGAATGACGATGAAC 349
||||||..||||.||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.|
Sbjct 257 CAATAAACGAGGAGAACGACGGAGACGCCGATGCCAGGTGGCATTCAGCTACCTGCCCCAGAATGACGATGAGC 330
Query 350 TTGAGCTGAAAGTTGGCGACATCATAGAGGTGGTAGGAGAGGTAGAGGAAGGATGGTGGGAAGGTGTTCTCAAC 423
|.|||||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.
Sbjct 331 TGGAGCTGAAAGTCGGGGACATCATAGAGGTTGTAGGAGAGGTAGAGGAAGGATGGTGGGAAGGTGTGCTCAAT 404
Query 424 GGGAAGACTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATTTCCCA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 405 GGGAAGACTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATCTCCCA 478
Query 498 GGATGAGCAGCTATCCAAGTCAAGTTTAAGGGAAACCACAGGCTCCGAGAGTGATGGGGGTGACTCAAGCAGCA 571
||||||||||||.|||||||||||.|||||.||||||||||||||||||||||||||.||.|||||.|||||.|
Sbjct 479 GGATGAGCAGCTTTCCAAGTCAAGCTTAAGAGAAACCACAGGCTCCGAGAGTGATGGAGGCGACTCCAGCAGTA 552
Query 572 CCAAGTCTGAAGGTGCCAACGGGACAGTGGCAACTGCAGCAATCCAGCCCAAGAAAGTTAAGGGAGTGGGCTTT 645
|||||||.|||||||||||||||||..|||||||||||||.||||||||||||||||||||.||||||||.|||
Sbjct 553 CCAAGTCCGAAGGTGCCAACGGGACCATGGCAACTGCAGCCATCCAGCCCAAGAAAGTTAAAGGAGTGGGGTTT 626
Query 646 GGAGACATTTTCAAAGACAAGCCAATCAAACTAAGACCAAGGTCAATTGAAGTAGAAAATGACTTTCTGCCGGT 719
||||||||||||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||.|||||.||
Sbjct 627 GGAGACATTTTCAAAGACAAGCCAATTAAACTAAGACCAAGGTCGATTGAAGTGGAAAATGACTTCCTGCCCGT 700
Query 720 AGAAAAGACTATTGGGAAGAAGTTACCTGCAACTACAGCAACTCCAGACTCATCAAAAACAGAAATGGACAGCA 793
.||||||||.||||||||||||||||||.||.|||||.|||||||||||.||||.||.||.||.||||||||||
Sbjct 701 CGAAAAGACAATTGGGAAGAAGTTACCTCCAGCTACATCAACTCCAGACCCATCGAAGACGGAGATGGACAGCA 774
Query 794 GGACAAAGAGCAAGGATTACTGCAAAGTAATATTTCCATATGAGGCACAGAATGATGATGAATTGACAATCAAA 867
|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 775 GGACAAAGACCAAGGATTACTGCAAAGTAATATTTCCATATGAGGCACAGAATGATGATGAATTGACAATCAAG 848
Query 868 GAAGGAGATATAGTCACTCTCATCAATAAGGACTGCATCGACGTAGGCTGGTGGGAAGGAGAGCTGAACGGCAG 941
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||.||.|||||
Sbjct 849 GAAGGAGATATAGTGACTCTCATCAATAAGGACTGCATCGACGTAGGCTGGTGGGAAGGAGAACTCAATGGCAG 922
Query 942 ACGAGGCGTGTTCCCCGATAACTTCGTGAAGTTACTTCCACCGGACTTTGAAAAGGAAGGGAATAGACCCAAGA 1015
||||||||||||.||.||.|||||||||||||||||||||.||||||||||.||||||||||||||||||||||
Sbjct 923 ACGAGGCGTGTTTCCTGACAACTTCGTGAAGTTACTTCCATCGGACTTTGACAAGGAAGGGAATAGACCCAAGA 996
Query 1016 AGCCACCGCCTCCATCCGCTCCTGTCATCAAACAAGGGGCAGGCACCACTGAGAGAAAACATGAAATTAAAAAG 1089
|.||.||.||||||||.|||||||||.||||||||||||||||.|||||.|||||||||||||||||||||||.
Sbjct 997 AACCGCCACCTCCATCAGCTCCTGTCGTCAAACAAGGGGCAGGTACCACAGAGAGAAAACATGAAATTAAAAAA 1070
Query 1090 ATACCTCCTGAAAGACCAGAAATGCTTCCAAACAGAACAGAAGAAAAAGAAAGACCAGAGAGAGAGCCAAAACT 1163
||||||||||||||||||||||..||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1071 ATACCTCCTGAAAGACCAGAAACCCTTCCAAACAGAACAGAAGAGAAAGAAAGACCAGAGAGAGAGCCAAAACT 1144
Query 1164 GGATTTACAGAAGCCCTCCGTTCCTGCCATACCGCCAAAAAAGCCTCGGCCACCTAAGACCAATTCTCTCAGCA 1237
|||||||||||||||.||.|||||||||||.||.|||||||||||||||||||||||||||||||||||.|.||
Sbjct 1145 GGATTTACAGAAGCCTTCAGTTCCTGCCATCCCACCAAAAAAGCCTCGGCCACCTAAGACCAATTCTCTGAACA 1218
Query 1238 GACCTGGCGCACTGCCCCCGAGAAGGCCGGAGAGACCGGTGGGTCCGCTGACACACACCAGGGGTGACAGTCCA 1311
|||||||.|||.|||||||.|||||.||.|||.||||.|||||.||.|||||||||||||||||||||||||||
Sbjct 1219 GACCTGGTGCATTGCCCCCAAGAAGACCTGAGCGACCAGTGGGCCCACTGACACACACCAGGGGTGACAGTCCA 1292
Query 1312 AAGATTGACTTGGCCGGCAGTTCGCTATCTGGCATCCTGGACAAAGATCTCTCGGACCGCAGCAATGACAT--- 1382
||||||||||||||.|||||..|.||.||||||||||||||.||.||.|||||.||||||||||||||.||
Sbjct 1293 AAGATTGACTTGGCAGGCAGCGCACTCTCTGGCATCCTGGATAAGGACCTCTCAGACCGCAGCAATGATATTGA 1366
Query 1383 -------------------------------------------------------------------------- 1382
Sbjct 1367 TTCACAGTCAGAAGTTAGAAATGAGACATATCTTCCTCCTGCACATCCCACTGTAACATCAAGATTGTAATGTT 1440
Query 1383 -------------------------------------------------------TGACTTAGAAGGTTTTGAC 1401
|||||||||||||||||||
Sbjct 1441 CTATGACATTGATGTATTGCATCTCACTAGTCTTTTCAACTTTGCCCAGTTTTACTGACTTAGAAGGTTTTGAC 1514
Query 1402 TCCGTGGTATCATCTACTGAGAAACTCAGTCATCCGACCACAAGCAGACCAAAAGCTACAGGGAGGCGGCCTCC 1475
||.|||.||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.||.||||||||
Sbjct 1515 TCTGTGATATCATCTACTGAGAAACTCAGCCACCCAACCACAAGCAGACCAAAAGCTACAGGAAGACGGCCTCC 1588
Query 1476 GTCCCAGTCCCTCACATCTTCATCCCTTTCAAGCCCTGATATCTTCGACTCCCCAAGTCCCGAAGAGGATAAGG 1549
.||||||||.|||||||||
Sbjct 1589 ATCCCAGTCACTCACATCT------------------------------------------------------- 1607
Query 1550 AGGAACACATTTCACTTGCGCACAGAGGAGTGGACGCGTCAAAGAAAACTTCCAAGACTGTTACCATATCCCAA 1623
Sbjct 1608 -------------------------------------------------------------------------- 1607
Query 1624 GTGTCTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGGCAGCAGGTGGCGGTGGGCCAGCCCCTCT 1697
||||||||.|||||..||||||||||.||||||||.||||||||||||||.|...||.||||||||||..||||
Sbjct 1608 GTGTCTGATAACAAGACATCCCTGCCACCCAAGCCAGGGACCATGGCAGCTGCCAGCAGTGGGCCAGCTTCTCT 1681
Query 1698 GTCCTCAGCGGTGCCCTCCCCCCTGTCATCCTCTTTGGGAACAGCTGGACACAGAGCCAACTCCCCGTCTCTGT 1771
.||.||||.||...||||.|||.||||||||||||||||||||||||||||.|||||||..||.||.|||||||
Sbjct 1682 CTCTTCAGTGGCATCCTCACCCATGTCATCCTCTTTGGGAACAGCTGGACAGAGAGCCAGTTCTCCATCTCTGT 1755
Query 1772 TCGGCACGGAAGGAAAACCAAAGATGGAGCCTGCGGCCAGCAGCCAGGCGGCCGTGGAGGAGCTAAGGACACAG 1845
||.||||.||||||||.||||||||||||||.||.|..|||||||||||.||..|.||||||||.|.||..||.
Sbjct 1756 TCAGCACAGAAGGAAAGCCAAAGATGGAGCCAGCAGTGAGCAGCCAGGCTGCTATCGAGGAGCTTAAGATGCAA 1829
Query 1846 GTCCGCGAGCTGAGGAGCATCATCGAGACCATGAAGGACCAGCAGAAACGAGAGATTAAACAGTTATTGTCTGA 1919
|||||.||||||||||.||||||.||||||||||||||||||||||||||.||||||||.||||||.||||.||
Sbjct 1830 GTCCGTGAGCTGAGGACCATCATTGAGACCATGAAGGACCAGCAGAAACGTGAGATTAAGCAGTTACTGTCAGA 1903
Query 1920 GTTGGATGAAGAGAAGAAAATCCGGCTTCGGTTGCAGATGGAAGTGAACGACATAAAGAAAGCTCTACAATCAA 1993
.||||||||||||||.||.||||||||.||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1904 ATTGGATGAAGAGAAAAAGATCCGGCTCCGGTTGCAGATGGAAGTGAACGACATAAAGAAAGCTCTTCAATCAA 1977
Query 1994 AA------------------------------------------------------------------------ 1995
|.
Sbjct 1978 AGTGATTACTTGATAATTGAGACATCACATTATTCATCCTGTGTCCAAGACTCAGATATTCTGCCCCAGTCAAA 2051
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2052 ATCATCTTGTGCCAAAAAATTAGAGGTTTGATTCATCGTGTCCCTGTTTGAACGTTTAGCACAAAAGTCTTAAT 2125
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2126 AGCACAACACAAATTCCATCCAAGAGGAGACTCTTTCCCATGGTGTTGTCCTGGGTCTGGCAGTGGTTGTGATT 2199
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2200 TATAGCCAATTGTGCTAAAGGATTTTTCTACCTTGAGATCTCCCGAGAAATGAAAACTCAGGCAGTTTAGTCCA 2273
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2274 TAGTAGTACTATTTTGATGATATTTTCCATTAACAAAATGTAATTTCAGATTATTCGTTTATAGGCTTTATAAT 2347
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2348 TTTATGGTTTTTTTTTAAAATCGTGTTTTGTCACAGATGCCCCTAGTGTTTGTGCTAACCTAGTCAGAAGCAAG 2421
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2422 TGTCTCACTCACTTGCTGCAGATGGAACAAATGCCGCCTGGCTTTGTATTCCCCTTTAGGATTCTATTACATAT 2495
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2496 GCAATTTGAGGTCTAACTTGTCCCTTTCCCTGCCAGCCAACCCCCACCACTCTAAGAGAAATTTTAGCTTATAT 2569
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2570 ATGACGGTATATTTGCAAAAAGAGAAAGAAAAATCTGGTATTTGCAATGATCTGTGCCTTCTTTCTACCACCCT 2643
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2644 CTTGATTGGAGCTTTTGTGATGCAGCTACCATGATTCCAAATAAGTAAAAATCAGCCACTTCTCCCTGTCCACT 2717
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2718 AGAGGTCGCTGTCTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAAGAGGAGACCCGCTGTGAAGTCTGGCC 2791
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2792 TGCTCTTTGGTACCAGCTGTGACTTTTCAGTTTCTCCTGCTTTGAGGTTGTTCACGAAACTAGAAATGTCATTC 2865
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2866 CAGCTTGATTGTTTTATCATCAGCCAAGTTAAACCCCTGCTTCCTGCCTTTTACACCTATTGCGTGAACAGAAT 2939
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2940 ATGCATTATTAAAGCAAAAATAAATAAAAAATAAAATGCAAGTGAAAACAGGGGGGGAATTGGATTATTTCCTG 3013
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3014 CACTGGGTTGTGCGTGTGTGTGTGTGTGCGCGTGTATGTGCGTGTGTGTGCGCGTGTGTGTTATTGTTTAAATT 3087
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3088 GTATTCACAGTGTTGTTTGCCTTGCTCACTTGTAACCCCCTCCTCGGATCTAGGAGAATGGGAGGAGGGTCTCG 3161
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3162 TGGAAATGTAGCTATTGGATCTTTCCTGCACTTATGGAAATGCTTTGTCTTTCCCAATGAAACTGATGTTTGCT 3235
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3236 TGTCTGCTTTCTCTTTATAGTACATGAACAGTTCAGCCTTAGACTATGTAACTGTTTTCTTATCTTTAGCTGAA 3309
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3310 AATGGGGGGAGGGCATTCTGTACTGCAAGATTGTTGATGGGGTAGAGGTGGAGGAGTGGTCCCTTAATGATCCC 3383
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3384 CCAAATATGTGTGTGATGTGTTTCTAAACTGCTGCTTTGTCTATTTCCTGCATTTTATAGTGAAACTACTAAAC 3457
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3458 ATAAATAGATTTTCACTACCACAAAGAATGAGAATTAATGACACTGAAGGAATGATGCAAAAACTTCCCATGAT 3531
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3532 TCATCACTGAAAATATGACTAATAAATGTCTCTTCCTTTTTCTTCCTGTCTCCATCCCCATGCCTTGTTCTAAC 3605
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3606 TTGCATACTTGTCCTTTCTGCTCGAAGCTGTCACTTCCTTCTAAGGATTTACAGAGGCCTAGGGCCCTAACCTT 3679
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3680 CAGGGGTGGGGACACAATTAAAGGAAGGGAATGTATAAAGAAATTATTCTTCATTCCAATATATGAAGATACTT 3753
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3754 GCCTTTTCAGCAGCGATGGTCTCAGTGTGCTTGGGGCAGGAGTACATAGTTTCTATGAGCGATATAAAGAGTTC 3827
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3828 CTGTTTCCCTTCACTGGGCCTAAGCCTTTCTGCATTACACTTGAAGCCTTCAGTCATTTCCTACCACTTATTAC 3901
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3902 AACAGTGAGGACTGGATTCTTGATGTCTTAATTTCTCATTTATTTGTCTAGAAAATCCATAATGATATAGGACA 3975
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3976 TTTATACCGAGTGAGATCATTAACAATGAAATTGAGAGATTAGAGCATCCTCACTGGGTGATGGTAACAGGGAA 4049
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4050 TGTAGAGGGCTGATATCTTCCCCTAAGAGAGGCATTAGGGTTAGAGAGATGGGGAGGGAGATATATAAATGGAG 4123
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4124 AGACCGAGACACACAGAGAGAAAGACACCGAGAAAGTAATTATAGAGAAATAAGCTGGTACGTCCAGCTTCATT 4197
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4198 ACTATCCCTTGGGCTAACCAGCAAGAAGATTGTACATCACAGAACTGGATGAGCCAAACAGCCACCATCTTTAC 4271
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4272 TCTTGACTAAATGGACCTATCAAGAATATTAAAAAGCTTGGAAATACCCTATCCACTTTTGAAAAATTAGAATT 4345
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4346 CCTTTGCATTCAGCATGGACTCAGCCAGGAATCTATGGAGGATTTTTTTTTTTGCTTCATTTTCTAAAGTTGTA 4419
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4420 TTTAGAAATATCTTATGTAATGTGCTTTGTAAAAGAAGATGAATTAAAATGAAATTTTGTGAAAATATTTTTGT 4493
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4494 TCAAAGTTGTCACAGTCCAAGAGGAATGGTATCTTGGAACACAAACCCCTTTTCTCTATTTTACACAATTTGAG 4567
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4568 TACTCTGTCAGAAATATCCTTAGAAGACAGGAAGTAATCCATTAAAATCTGTGCCTGTGAATTTGATTTTTAAA 4641
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4642 ATTGTTCGATTTTACATTCCTATCGAAGCGTAAAATGCTAGTTAGGTACAAATTCTTTTTTTAGTGTGAAAACC 4715
Query 1996 --------------------- 1995
Sbjct 4716 ATTAAATTATTATTATTGGAA 4736
