Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08160
- Subject:
- NR_110970.1
- Aligned Length:
- 4773
- Identities:
- 1737
- Gaps:
- 2822
Alignment
Query 1 ----ATGGTGGAGG---CCATAGT----GGAGTTTGACT-AC-CAGGCCCAGCACGATGATGAGCTGAC-GATC 60
|.|.|.|.|| .||.||| ||| ||| || |..||||.|.| |.||.||| |..|
Sbjct 1 AGAAAGGCTTGCGGTTCTCAGAGTGCACGGA-----ACTCACTCCTGCCCGGGA-------GTGCAGACAGTCC 62
Query 61 AGCGTGGGTGAAATCATCA---CCAACATCAGGAAGGAGGATGGAGGCTGGTGGGAGGGACAGATCAACGGCAG 131
|.| .|||.|||.|| ||.||..|| .||.||||||..|..|| ||| .|||.|.|..
Sbjct 63 ACC-----AGAAGTCACCATTCCCCACTCCA-----CAGAATGGAGCTTTCTG-------CAG-CCAAAGCCCC 118
Query 132 GAGAGGTTTGTTCCCTGACA-ACTT---TGTAAGAGAAATAAAGAAAGAGATGAAGAAAGACCCTCTCACCAAC 201
.|| ||..||| |||| ||..||.||||||||||||||.|||||||||||.|.||||.|.|||
Sbjct 119 AAG----------CCCCACAGACTTGCCTGAGAGTGAAATAAAGAAAGATATGAAGAAAGATCTTCTCTCTAAC 182
Query 202 AAAGCTCCAGAAAAGCCCCTGCACGAAGTGCCCAGTGGAAACTCTTTGCTGTCTTCTGAAACGATTTTAAGAAC 275
|||||||||||.||.|||.|||||||.||..|||||||||||.||.||||.|||||||||||.|||||||||||
Sbjct 183 AAAGCTCCAGAGAAACCCATGCACGATGTATCCAGTGGAAACGCTCTGCTTTCTTCTGAAACCATTTTAAGAAC 256
Query 276 CAATAAGAGAGGCGAGCGACGGAGGCGCCGGTGCCAGGTGGCATTCAGCTACCTGCCCCAGAATGACGATGAAC 349
||||||..||||.||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.|
Sbjct 257 CAATAAACGAGGAGAACGACGGAGACGCCGATGCCAGGTGGCATTCAGCTACCTGCCCCAGAATGACGATGAGC 330
Query 350 TTGAGCTGAAAGTTGGCGACATCATAGAGGTGGTAGGAGAGGTAGAGGAAGGATGGTGGGAAGGTGTTCTCAAC 423
|.|||||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||.
Sbjct 331 TGGAGCTGAAAGTCGGGGACATCATAGAGGTTGTAGGAGAGGTAGAGGAAGGATGGTGGGAAGGTGTGCTCAAT 404
Query 424 GGGAAGACTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATTTCCCA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 405 GGGAAGACTGGAATGTTTCCTTCCAACTTCATCAAGGAGCTGTCAGGGGAGTCGGATGAGCTTGGCATCTCCCA 478
Query 498 GGATGAGCAGCTATCCAAGTCAAGTTTAAGGGAAACCACAGGCTCCGAGAGTGATGGGGGTGACTCAAGCAGCA 571
||||||||||||.|||||||||||.|||||.||||||||||||||||||||||||||.||.|||||.|||||.|
Sbjct 479 GGATGAGCAGCTTTCCAAGTCAAGCTTAAGAGAAACCACAGGCTCCGAGAGTGATGGAGGCGACTCCAGCAGTA 552
Query 572 CCAAGTCTGAAGGTGCCAACGGGACAGTGGCAACTGCAGCAATCCAGCCCAAGAAAGTTAAGGGAGTGGGCTTT 645
|||||||.|||||||||||||||||..|||||||||||||.||||||||||||||||||||.||||||||.|||
Sbjct 553 CCAAGTCCGAAGGTGCCAACGGGACCATGGCAACTGCAGCCATCCAGCCCAAGAAAGTTAAAGGAGTGGGGTTT 626
Query 646 GGAGACATTTTCAAAGACAAGCCAATCAAACTAAGACCAAGGTCAATTGAAGTAGAAAATGACTTTCTGCCGGT 719
||||||||||||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||.|||||.||
Sbjct 627 GGAGACATTTTCAAAGACAAGCCAATTAAACTAAGACCAAGGTCGATTGAAGTGGAAAATGACTTCCTGCCCGT 700
Query 720 AGAAAAGACTATTGGGAAGAAGTTACCTGCAACTACAGCAACTCCAGACTCATCAAAAACAGAAATGGACAGCA 793
.||||||||.||||||||||||||||||.||.|||||.|||||||||||.||||.||.||.||.||||||||||
Sbjct 701 CGAAAAGACAATTGGGAAGAAGTTACCTCCAGCTACATCAACTCCAGACCCATCGAAGACGGAGATGGACAGCA 774
Query 794 GGACAAAGAGCAAGGATTACTGCAAAGTAATATTTCCATATGAGGCACAGAATGATGATGAATTGACAATCAAA 867
|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 775 GGACAAAGACCAAGGATTACTGCAAAGTAATATTTCCATATGAGGCACAGAATGATGATGAATTGACAATCAAG 848
Query 868 GAAGGAGATATAGTCACTCTCATCAATAAGGACTGCATCGACGTAGGCTGGTGGGAAGGAGAGCTGAACGGCAG 941
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||.||.|||||
Sbjct 849 GAAGGAGATATAGTGACTCTCATCAATAAGGACTGCATCGACGTAGGCTGGTGGGAAGGAGAACTCAATGGCAG 922
Query 942 ACGAGGCGTGTTCCCCGATAACTTCGTGAAGTTACTTCCACCGGACTTTGAAAAGGAAGGGAATAGACCCAAGA 1015
||||||||||||.||.||.|||||||||||||||||||||.||||||||||.||||||||||||||||||||||
Sbjct 923 ACGAGGCGTGTTTCCTGACAACTTCGTGAAGTTACTTCCATCGGACTTTGACAAGGAAGGGAATAGACCCAAGA 996
Query 1016 AGCCACCGCCTCCATCCGCTCCTGTCATCAAACAAGGGGCAGGCACCACTGAGAGAAAACATGAAATTAAAAAG 1089
|.||.||.||||||||.|||||||||.||||||||||||||||.|||||.|||||||||||||||||||||||.
Sbjct 997 AACCGCCACCTCCATCAGCTCCTGTCGTCAAACAAGGGGCAGGTACCACAGAGAGAAAACATGAAATTAAAAAA 1070
Query 1090 ATACCTCCTGAAAGACCAGAAATGCTTCCAAACAGAACAGAAGAAAAAGAAAGACCAGAGAGAGAGCCAAAACT 1163
||||||||||||||||||||||..||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1071 ATACCTCCTGAAAGACCAGAAACCCTTCCAAACAGAACAGAAG----AGAAAGACCAGAGAGAGAGCCAAAACT 1140
Query 1164 GGATTTACAGAAGCCCTCCGTTCCTGCCATACCGCCAAAAAAGCCTCGGCCACCTAAGACCAATTCTCTCAGCA 1237
|||||||||||||||.||.|||||||||||.||.|||||||||||||||||||||||||||||||||||.|.||
Sbjct 1141 GGATTTACAGAAGCCTTCAGTTCCTGCCATCCCACCAAAAAAGCCTCGGCCACCTAAGACCAATTCTCTGAACA 1214
Query 1238 GACCTGGCGCACTGCCCCCGAGAAGGCCGGAGAGACCGGTGGGTCCGCTGACACACACCAGGGGTGACAGTCCA 1311
|||||||.|||.|||||||.|||||.||.|||.||||.|||||.||.|||||||||||||||||||||||||||
Sbjct 1215 GACCTGGTGCATTGCCCCCAAGAAGACCTGAGCGACCAGTGGGCCCACTGACACACACCAGGGGTGACAGTCCA 1288
Query 1312 AAGATTGACTTGGCCGGCAGTTCGCTATCTGGCATCCTGGACAAAGATCTCTCGGACCGCAGCAATGACATTGA 1385
||||||||||||||.|||||..|.||.||||||||||||||.||.||.|||||.||||||||||||||.|||||
Sbjct 1289 AAGATTGACTTGGCAGGCAGCGCACTCTCTGGCATCCTGGATAAGGACCTCTCAGACCGCAGCAATGATATTGA 1362
Query 1386 CTTAGAAGGTTTTGACTCCGTGGTATCATCTACTGAGAAACTCAGTCATCCGACCACAAGCAGACCAAAAGCTA 1459
||||||||||||||||||.|||.||||||||||||||||||||||.||.||.||||||||||||||||||||||
Sbjct 1363 CTTAGAAGGTTTTGACTCTGTGATATCATCTACTGAGAAACTCAGCCACCCAACCACAAGCAGACCAAAAGCTA 1436
Query 1460 CAGGGAGGCGGCCTCCGTCCCAGTCCCTCACATCTTCATCCCTTTCAAGCCCTGATATCTTCGACTCCCCAAGT 1533
||||.||.||||||||.||||||||.|||||||||||.||||||||||||||.||||||||.||||||||||||
Sbjct 1437 CAGGAAGACGGCCTCCATCCCAGTCACTCACATCTTCTTCCCTTTCAAGCCCCGATATCTTTGACTCCCCAAGT 1510
Query 1534 CCCGAAGAGGATAAGGAGGAACACATTTCACTTGCGCACAGAGGAGTGGACGCGTCAAAGAAAACTTCCAAGAC 1607
||||||||.|||||.||||||||||||||.|||||||||||||||.|.||||.|||||||||.|||||||||||
Sbjct 1511 CCCGAAGAAGATAAAGAGGAACACATTTCGCTTGCGCACAGAGGAATAGACGTGTCAAAGAAGACTTCCAAGAC 1584
Query 1608 TGTTACCATATCCCAAGTGTCTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGGCAGCAGGTGGCG 1681
||||||||||||||||||||||||.|||||..||||||||||.||||||||.||||||||||||||.|...||.
Sbjct 1585 TGTTACCATATCCCAAGTGTCTGATAACAAGACATCCCTGCCACCCAAGCCAGGGACCATGGCAGCTGCCAGCA 1658
Query 1682 GTGGGCCAGCCCCTCTGTCCTCAGCGGTGCCCTCCCCCCTGTCATCCTCTTTGGGAACAGCTGGACACAGAGCC 1755
||||||||||..||||.||.||||.||...||||.|||.||||||||||||||||||||||||||||.||||||
Sbjct 1659 GTGGGCCAGCTTCTCTCTCTTCAGTGGCATCCTCACCCATGTCATCCTCTTTGGGAACAGCTGGACAGAGAGCC 1732
Query 1756 AACTCCCCGTCTCTGTTCGGCACGGAAGGAAAACCAAAGATGGAGCCTGCGGCCAGCAGCCAGGCGGCCGTGGA 1829
|..||.||.|||||||||.||||.||||||||.||||||||||||||.||.|..|||||||||||.||..|.||
Sbjct 1733 AGTTCTCCATCTCTGTTCAGCACAGAAGGAAAGCCAAAGATGGAGCCAGCAGTGAGCAGCCAGGCTGCTATCGA 1806
Query 1830 GGAGCTAAGGACACAGGTCCGCGAGCTGAGGAGCATCATCGAGACCATGAAGGACCAGCAGAAACGAGAGATTA 1903
||||||.|.||..||.|||||.||||||||||.||||||.||||||||||||||||||||||||||.|||||||
Sbjct 1807 GGAGCTTAAGATGCAAGTCCGTGAGCTGAGGACCATCATTGAGACCATGAAGGACCAGCAGAAACGTGAGATTA 1880
Query 1904 AACAGTTATTGTCTGAGTTGGATGAAGAGAAGAAAATCCGGCTTCGGTTGCAGATGGAAGTGAACGACATAAAG 1977
|.||||||.||||.||.||||||||||||||.||.||||||||.||||||||||||||||||||||||||||||
Sbjct 1881 AGCAGTTACTGTCAGAATTGGATGAAGAGAAAAAGATCCGGCTCCGGTTGCAGATGGAAGTGAACGACATAAAG 1954
Query 1978 AAAGCTCTACAATCAAAA-------------------------------------------------------- 1995
||||||||.||||||||.
Sbjct 1955 AAAGCTCTTCAATCAAAGTGATTACTTGATAATTGAGACATCACATTATTCATCCTGTGTCCAAGACTCAGATA 2028
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2029 TTCTGCCCCAGTCAAAATCATCTTGTGCCAAAAAATTAGAGGTTTGATTCATCGTGTCCCTGTTTGAACGTTTA 2102
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2103 GCACAAAAGTCTTAATAGCACAACACAAATTCCATCCAAGAGGAGACTCTTTCCCATGGTGTTGTCCTGGGTCT 2176
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2177 GGCAGTGGTTGTGATTTATAGCCAATTGTGCTAAAGGATTTTTCTACCTTGAGATCTCCCGAGAAATGAAAACT 2250
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2251 CAGGCAGTTTAGTCCATAGTAGTACTATTTTGATGATATTTTCCATTAACAAAATGTAATTTCAGATTATTCGT 2324
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2325 TTATAGGCTTTATAATTTTATGGTTTTTTTTTAAAATCGTGTTTTGTCACAGATGCCCCTAGTGTTTGTGCTAA 2398
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2399 CCTAGTCAGAAGCAAGTGTCTCACTCACTTGCTGCAGATGGAACAAATGCCGCCTGGCTTTGTATTCCCCTTTA 2472
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2473 GGATTCTATTACATATGCAATTTGAGGTCTAACTTGTCCCTTTCCCTGCCAGCCAACCCCCACCACTCTAAGAG 2546
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2547 AAATTTTAGCTTATATATGACGGTATATTTGCAAAAAGAGAAAGAAAAATCTGGTATTTGCAATGATCTGTGCC 2620
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2621 TTCTTTCTACCACCCTCTTGATTGGAGCTTTTGTGATGCAGCTACCATGATTCCAAATAAGTAAAAATCAGCCA 2694
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2695 CTTCTCCCTGTCCACTAGAGGTCGCTGTCTTCACAGCTTCTCTCACCCTAGCCAAAGGTCCTAAGAGGAGACCC 2768
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2769 GCTGTGAAGTCTGGCCTGCTCTTTGGTACCAGCTGTGACTTTTCAGTTTCTCCTGCTTTGAGGTTGTTCACGAA 2842
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2843 ACTAGAAATGTCATTCCAGCTTGATTGTTTTATCATCAGCCAAGTTAAACCCCTGCTTCCTGCCTTTTACACCT 2916
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2917 ATTGCGTGAACAGAATATGCATTATTAAAGCAAAAATAAATAAAAAATAAAATGCAAGTGAAAACAGGGGGGGA 2990
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 2991 ATTGGATTATTTCCTGCACTGGGTTGTGCGTGTGTGTGTGTGTGCGCGTGTATGTGCGTGTGTGTGCGCGTGTG 3064
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3065 TGTTATTGTTTAAATTGTATTCACAGTGTTGTTTGCCTTGCTCACTTGTAACCCCCTCCTCGGATCTAGGAGAA 3138
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3139 TGGGAGGAGGGTCTCGTGGAAATGTAGCTATTGGATCTTTCCTGCACTTATGGAAATGCTTTGTCTTTCCCAAT 3212
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3213 GAAACTGATGTTTGCTTGTCTGCTTTCTCTTTATAGTACATGAACAGTTCAGCCTTAGACTATGTAACTGTTTT 3286
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3287 CTTATCTTTAGCTGAAAATGGGGGGAGGGCATTCTGTACTGCAAGATTGTTGATGGGGTAGAGGTGGAGGAGTG 3360
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3361 GTCCCTTAATGATCCCCCAAATATGTGTGTGATGTGTTTCTAAACTGCTGCTTTGTCTATTTCCTGCATTTTAT 3434
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3435 AGTGAAACTACTAAACATAAATAGATTTTCACTACCACAAAGAATGAGAATTAATGACACTGAAGGAATGATGC 3508
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3509 AAAAACTTCCCATGATTCATCACTGAAAATATGACTAATAAATGTCTCTTCCTTTTTCTTCCTGTCTCCATCCC 3582
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3583 CATGCCTTGTTCTAACTTGCATACTTGTCCTTTCTGCTCGAAGCTGTCACTTCCTTCTAAGGATTTACAGAGGC 3656
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3657 CTAGGGCCCTAACCTTCAGGGGTGGGGACACAATTAAAGGAAGGGAATGTATAAAGAAATTATTCTTCATTCCA 3730
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3731 ATATATGAAGATACTTGCCTTTTCAGCAGCGATGGTCTCAGTGTGCTTGGGGCAGGAGTACATAGTTTCTATGA 3804
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3805 GCGATATAAAGAGTTCCTGTTTCCCTTCACTGGGCCTAAGCCTTTCTGCATTACACTTGAAGCCTTCAGTCATT 3878
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3879 TCCTACCACTTATTACAACAGTGAGGACTGGATTCTTGATGTCTTAATTTCTCATTTATTTGTCTAGAAAATCC 3952
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 3953 ATAATGATATAGGACATTTATACCGAGTGAGATCATTAACAATGAAATTGAGAGATTAGAGCATCCTCACTGGG 4026
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4027 TGATGGTAACAGGGAATGTAGAGGGCTGATATCTTCCCCTAAGAGAGGCATTAGGGTTAGAGAGATGGGGAGGG 4100
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4101 AGATATATAAATGGAGAGACCGAGACACACAGAGAGAAAGACACCGAGAAAGTAATTATAGAGAAATAAGCTGG 4174
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4175 TACGTCCAGCTTCATTACTATCCCTTGGGCTAACCAGCAAGAAGATTGTACATCACAGAACTGGATGAGCCAAA 4248
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4249 CAGCCACCATCTTTACTCTTGACTAAATGGACCTATCAAGAATATTAAAAAGCTTGGAAATACCCTATCCACTT 4322
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4323 TTGAAAAATTAGAATTCCTTTGCATTCAGCATGGACTCAGCCAGGAATCTATGGAGGATTTTTTTTTTTGCTTC 4396
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4397 ATTTTCTAAAGTTGTATTTAGAAATATCTTATGTAATGTGCTTTGTAAAAGAAGATGAATTAAAATGAAATTTT 4470
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4471 GTGAAAATATTTTTGTTCAAAGTTGTCACAGTCCAAGAGGAATGGTATCTTGGAACACAAACCCCTTTTCTCTA 4544
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4545 TTTTACACAATTTGAGTACTCTGTCAGAAATATCCTTAGAAGACAGGAAGTAATCCATTAAAATCTGTGCCTGT 4618
Query 1996 -------------------------------------------------------------------------- 1995
Sbjct 4619 GAATTTGATTTTTAAAATTGTTCGATTTTACATTCCTATCGAAGCGTAAAATGCTAGTTAGGTACAAATTCTTT 4692
Query 1996 ------------------------------------- 1995
Sbjct 4693 TTTTAGTGTGAAAACCATTAAATTATTATTATTGGAA 4729
