Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08210
- Subject:
- XR_385387.3
- Aligned Length:
- 3499
- Identities:
- 855
- Gaps:
- 2608
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCCCAGCCTCTGCTGGCGCTAAACCCCGGAGAGCGGAGCGTGCACGCTGAGCCTCCTCGGCGGGCCCGGCCGC 74
Query 1 ------------------------------------------------------------ATGTCCAACCGAGT 14
||||||||||||||
Sbjct 75 GGCGCTGGGCATGCTCAGTGGGCCGGCCCCGGTAGAGCGGCGAGCGGCACAGGCACCAAGATGTCCAACCGAGT 148
Query 15 GGTCTGCCGAGAAGCCAGTCACGCCGGGAGCTGGTACACAGCCTCAGGACCGCATCTGAATGCACAGCTAGAAG 88
|||||||||.||||||||.||||||||||||||||||||.|||||||||||.||.|||||.||.|||||.||||
Sbjct 149 GGTCTGCCGGGAAGCCAGCCACGCCGGGAGCTGGTACACCGCCTCAGGACCTCAGCTGAACGCTCAGCTGGAAG 222
Query 89 GTTGGCTTTCACAAGTACAGTCTACAAAAAGACCTGCTAGAGCCATTATTGCCCCCCATGCAGGATATACGTAC 162
|||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||.|||||.||.|||
Sbjct 223 GTTGGCTTTCACAAGTACAGTCTACGAAAAGACCTGCTAGAGCCATTATTGCACCCCATGCGGGATACACATAC 296
Query 163 TGTGGGTCTTGTGCTGCCCATGCTTATAAACAAGTGGATCCGTCTATTACCCGGAGAATTTTCATCCTTGGGCC 236
||||||||.|||||||||||||||||.||||||||||||||.|||.||||||||||||||||||||||||||||
Sbjct 297 TGTGGGTCCTGTGCTGCCCATGCTTACAAACAAGTGGATCCATCTGTTACCCGGAGAATTTTCATCCTTGGGCC 370
Query 237 TTCTCATCATGTGCCCCTCTCTCGATGTGCACTTTCCAGTGTGGATATATATAGGACACCTCTGTATGACCTTC 310
|||.||||||||||||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||.||||
Sbjct 371 TTCCCATCATGTGCCCCTGTCTCGATGTGCACTCTCCAGTGTGGATATATATAGGACTCCTCTGTATGATCTTC 444
Query 311 GTATTGACCAAAAGATTTACGGAGAACTGTGGAAGACAGGAATGTTTGAACGCATGTCTCTGCAGACAGATGAA 384
|||||||||||||||||||||||||.||.|||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 445 GTATTGACCAAAAGATTTACGGAGAGCTATGGAAGACAGGAATGTTTGAACGAATGTCTCTGCAGACAGATGAA 518
Query 385 GATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAGGATGAGTTTACCAT 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 519 GATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAAGATGAGTTTACCAT 592
Query 459 TATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAG 666
Query 533 CGGATCCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCATTGG--------------------------- 579
|||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 667 CGGATCCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCACTGGGTGGTTTACAGATCAGTTCCAATCAAT 740
Query 580 -------------------------------------------------------------------------- 579
Sbjct 741 TTACTAAAAAGCGTGCTCTGGAATGGATTCACAAATGAGCTACCCTCCTTCCCTCAAAGAGTAAGGTTTCTGCT 814
Query 580 -------------------------------------------------------------------------- 579
Sbjct 815 TTACAGGATTTTTTTTTCCTTGGGTTATTTTTCCTCTCATCTTTTGAATTTGAAAAGAACTGAGGGAAGGCACC 888
Query 580 -------------------------------------------------------------------------- 579
Sbjct 889 TGAAGAAACCACTGATACACTCACTAGGGAGTTGCAGAGCTTGTCCCGCCCCTAGGGCGGAGTCCATGCTCCTA 962
Query 580 -------------------------------------------------------------------------- 579
Sbjct 963 AAGCTAAAGCTCACACTTGAAGTGGAAACAGGGGCTCAGAGAATCCATTTTCCCAGTGTGCCTTCTGAAAGGAT 1036
Query 580 --------GGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGAGATTTATAGATCCATTGAACAT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAGTCTCAGGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGAGATTTATAGATCCATTGAACAT 1110
Query 646 CTAGATAAAATGGGTATGAGTATTATAGAACAATTAGACCCTGTATCTTTTAGCAATTACTTGAAGAAATACCA 719
||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||
Sbjct 1111 CTAGATAAAATGGGTATGAGTATTATAGAACAATTAGATCCTGTATCTTTTAGCAATTATTTGAAGAAATATCA 1184
Query 720 TAATACTATATGTGGAAGACATCCCATTGGGGTGTTATTAAATGCTATCACAGAGCTCCAGAAGAATGGAATGA 793
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1185 TAATACTATATGTGGAAGACATCCCATTGGGGTGTTATTAAATGCTATCACAGAGCTTCAGAAGAATGGAATGA 1258
Query 794 ATATGAGTTTTTCGTTTTTGAATTATGCCCAGTCGAGCCAGTGTAGAAACTGGCAAGACAGTTCAGTGAGTTAT 867
|||||||.|||||.||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||||.
Sbjct 1259 ATATGAGCTTTTCCTTTTTGAATTATGCCCAGTCGAGCCAGTGTAGAAGCTGGCAAGACAGTTCAGTCAGTTAC 1332
Query 868 GCAGCTGGAGCACTCACGGTCCAC-------------------------------------------------- 891
||||||||||||||||||||||||
Sbjct 1333 GCAGCTGGAGCACTCACGGTCCACTGAAGCTCCGATCCTCAGGGACACCACCTGCACAGACTCGTACTCTGTCC 1406
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1407 AGGGTCCAGCCTAGCCTTTACCAAGATGTTGGTTCTGGTGTGGGGGGATTCTGAAACCTCAGACTAATAGAACT 1480
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1481 CTCTTCTTCTTTTCTAGTAGGTGTAGTCCTCCTTAATTTCAACTCATTTTAAAAATGCTTTCTAGTTTGAGGCA 1554
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1555 GTGGAAGGAAGGCTGGAATCAAAATATTTGCCCAAATTGGCACACAGTGACTTGTAAAGCATTTAGCATATCTG 1628
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1629 AAATTTGCACTCTTTGCAGACTCATGCACATATATTCCGCTTTCAGAATAGTTTTGCAAATTGTACACAGACAA 1702
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1703 AGGGTGGAAGCTTTTTAATAAAAGAAACTGCATTTATAAATGATCTGTATTAGAATATAAGAAATCTCCAGTTA 1776
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1777 TAGACAATTACTACCCATGTTGTACAACAGATACCTTCTATTTTAGTTGCTAATAAAGGGCTACACAACTCAAA 1850
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1851 ATAGTCTGATTTAAACTTATTGCTTTGTGGTATAAATGGAAATTGTTTTTTATTAATTCTATCTCAGAATTTTT 1924
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1925 GTTAAAATGGCAAGCCTCAGCTTCGATGTAATAATGTTAAAATTATTTTATTTTTACATTTATGTGATTTTTTT 1998
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1999 TTAAATCACAGAAATTATAGTCATATTTTAAAGTTAACTTTCAAAACTATAGTCATTGCATTTTTGTGTGTGAC 2072
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2073 ATACCCTCATGTCATTATTATATTGTACTACAATATAAATTCAAGGATGCTTTAAAAACAAGTAGATTTATTCC 2146
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2147 TTTCCTCCAATGACTGTGTTCGGTAGTCTGCACATGAAGATATTGAAGAGTGTCATTAGTTGTGTTTCAAGTTG 2220
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2221 TTGCAGACCATCACCACTATGGTTTTTTGTTTGTTTGTTTGTTTTTATTGCTTTAAGCAATTTAACTCTTTCAC 2294
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2295 TTGAATTTTTAGCAAGAAATCATTAACAATATTAGTAACAAGGCCTATTGGACTTCTGATAGTCCTGCAAAAAA 2368
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2369 TTTGTTTGGGGAGGGCATGATTTTTGGTGCGGCTCTTCCAACTAAAATAATGGTATGGTGTTGTATTTCTTTAT 2442
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2443 CATAGATTTATTCTAGTCATTTTGGGGAGGAAAGTGTTAACTCATTAAGCCATCATGCATGTTGTTCATCATCC 2516
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2517 CTGTTTTACCAACACTGGATGTTTCTATAACATTGGAGAGTGTTAGTCTTCAGTGTTATACCCAAGTAGCACAA 2590
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2591 GCTTTAGATGCCTTGCACCAATTTTCTTTTGGAGATTTACGTTTCTTACTTATTAAATACCAATTTTCTATTCT 2664
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2665 CAAGAATGGGAGAAAATAATACTACCTTTTAGATTTAAAATTTACCTACTTATACATGTAGGAAATATACTCTT 2738
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2739 ATACATCAGTGTTTTATTTTCCATTATTTAGATACGCTTTTGAGTACTATAAATATTTATTTCTTGTTTAATAC 2812
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2813 AGATTATAAAAATTTCTGAATTGACAATAGTGAATTTTTAAAATAATGTTTTCTGAGTATAGAATTTGAAAATA 2886
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2887 CTGAAAAGTCAGAAGAAAAAATCTATTACCTACAATCTCACTACTCCAGAGATAACACTGTTAAATGTTTTTCT 2960
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2961 GTATTTACTTGTAGTCCTTGTGTTTTTTATGAGTGTGTATGTGTGTGTGTGTGTGTGTGCAACAACAGAATTGA 3034
Query 892 -------------------------------------------------------------------------- 891
Sbjct 3035 GATTATAGTGCCCATACATTTGCGTTATGCCCTGTTATCCTAAGTATCTACTACCTGTGTCTCTGAAAGCACTA 3108
Query 892 -------------------------------------------------------------------------- 891
Sbjct 3109 TTTTAAAAATGCCTGCCTAATATGCTATACTGTATGAAAATAGTTCTCTCTTTGGATGTTAGGCTGTTTCTAAT 3182
Query 892 -------------------------------------------------------------------------- 891
Sbjct 3183 TTTCCTCAATTTTATAATGGTACGGACATTCTGTGTAAATTAGACCCAGTCTCTAGGATATAATCATGAAAATG 3256
Query 892 -------------------------------------------------------------------------- 891
Sbjct 3257 AAATAAATGGTTTACATGATAATTTTGTAGGCCCTTTAAAAGTATGCCAAATTATATTTTCAATAGATTGTATC 3330
Query 892 -------------------------------------------------------------------------- 891
Sbjct 3331 AAATTAACAGCACCCCCACATCAGCATCGTTTCTTTTAATTTTTGAAAAATTGTTAAGCAAGTAATTGTTTCTT 3404
Query 892 -------------------------------------------------------------------------- 891
Sbjct 3405 TTTTAAAGACTTTCTTTCGAATTAGTCATTTATTGTCTTTTATAAATTTAGAATGTTTTTTTTGAAAAACAACA 3478
Query 892 --------------------- 891
Sbjct 3479 TTAAAGAGACGTCTAGTTCTA 3499
