Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08344
Subject:
NM_001042590.4
Aligned Length:
2783
Identities:
964
Gaps:
1780

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCCCAGCCCTTGTCCCGGCCCCTCGTCCTATCCCAATCCCCGCCTTGGCCCCCAGCCCCGCCCTCGCCCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTCCCACATCGGCCCCAGCCCCTGCCTGGGTCCCCATCCAGGACCCCCTTCCAGTCTCTGCCCCTGGCCTGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCCATCCCGGCCTCGGCCCTCGTTCCACCCCCTGTCACAAATCCCAGCCCAGGCCCTGTCCCAGCCCCATTCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGTGTTTGCTTAAGGCCCTGGCTCAACCCCGTCCCTTGCTGCAGTCCCCATCACAGCCCTTCCTTCCATCCCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCCCTGCCCTTGTTCAAGCCCCAGTGTCCAGCCCAGCCCAACCCATTATCTCAGCCTTTGCCCTCATCTCTGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTTTACCCAAGTCTCTCCCTCTAGTCCCCCCTATCTCTCATACTCTGCCCCTCTCCCAGCCTAGACTCAAGTCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGGTTTCAGCTGCCGCCAGCCCTATTGCTGCTGTTGCTGTTCTCTGTCCTTGGCCCAGGGGCTGGAGGCCTTTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCTGACTGATTACTCCACCTGCTCACCCCGCAAGCTGAGTCCTTTCCGCTCCTTTGCCAGCACCGAGCTCTTCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACTTCCATGTTCCTGAGGACACATTCCTGGCTGTTTGGAACCTCATCATCTTCAAGGAGCAAGGGGGAACTTTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGGGACCACTGCCCAGACCAAAGTGTGACTGTGTATTTCCGGTCCGGGGCACCCCCTGTCATCAATCCCCTGCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TACACACTTCCCAGGGGACACAGCTGTGCCTGGGGTTTTCTCACTGACCCTCAGCTGGACACTGCCCAACCGCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTCAGGCATCTTTAACGTCAGCAGCCCCTTACCTGGGGACTGGTTCTTGGCTGCCCACCTTCCCCAGGCCCAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGCCACATCTCTGTCAAGGGTCTCCAGGATGAGTGTCAGTACCTCCTTCAGCCGCAGCTGATTGTCCGGCGTTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCTGGACGTCGCTGTGCTGGTTCCTGGCCGGCCCTCAGAGCAAACCCTCTCCCCACACAATCGCTCAGCCCTGT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACAAGGTCTTTGTGCCCAGCTTCACTTACAGGGTTTCAGCACAGCTGGTGTGTGTGGGGGGCCGTGGGGTATCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCCTGCCCCCTGTCACTGCGTCTGCGTCCCAAAGCCCCACCCCTGCACAACTCAAGCTCTGTGGCCTGTGGAGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGCCTCAGGATGCCAGCTGGAGCTGGCACTGCCCCCCTGGGGGCACTGGGTCTACGTGCGTGTGGAAACATCAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCCGGGGCCCTGGTAGGACCATCCGCTTCCAGCTGTGTGTGCGGTTGCAAGAGTGCCCACAGCCCGGCCTGCTC  1332

Query    1  ------------------------ATGAACATGCCCCAGTCCCTGGGCAACCAGCCACTGCCCCCAGAACCGCC  50
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CGAGCCCTGGTCCCTGGAGCTGCCATGAACATGCCCCAGTCCCTGGGCAACCAGCCACTGCCCCCAGAACCGCC  1406

Query   51  ATCCCTTGGAACCCCTGCGGAGGGGCCTGGGACCACGTCCCCACCCGAGCACTGCTGGCCAGTGCGCCCGACTC  124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ATCCCTTGGAACCCCTGCGGAGGGGCCTGGGACCACGTCCCCACCCGAGCACTGCTGGCCAGTGCGCCCGACTC  1480

Query  125  TGCGCAACGAGCTGGACACCTTCTCTGTCCACTTCTACATCTTCTTTGGCCCAAGTGTGGCCCTTCCCCCTGAG  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGCGCAACGAGCTGGACACCTTCTCTGTCCACTTCTACATCTTCTTTGGCCCAAGTGTGGCCCTTCCCCCTGAG  1554

Query  199  CGCCCAGCCGTGTTCGCCATGAGGCTGTTGCCAGTGCTGGACAGTGGAGGCGTCCTCAGCCTGGAGCTCCAGCT  272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CGCCCAGCCGTGTTCGCCATGAGGCTGTTGCCAGTGCTGGACAGTGGAGGCGTCCTCAGCCTGGAGCTCCAGCT  1628

Query  273  CAATGCGAGCTCCGTGCGCCAGGAAAACGTGACGGTGTTTGGATGCTTGACTCACGAGGTGCCCTTGAGCCTGG  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CAATGCGAGCTCCGTGCGCCAGGAAAACGTGACGGTGTTTGGATGCTTGACTCACGAGGTGCCCTTGAGCCTGG  1702

Query  347  GGGATGCAGCAGTGACCTGTTCCAAAGAGTCCCTGGCCGGCTTCCTCCTCTCTGTCAGTGCCACCACCAGGGTT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GGGATGCAGCAGTGACCTGTTCCAAAGAGTCCCTGGCCGGCTTCCTCCTCTCTGTCAGTGCCACCACCAGGGTT  1776

Query  421  GCCAGGCTGCGAATCCCATTCCCGCAGACGGGGACCTGGTTCCTGGCCCTCCGCTCCCTGTGCGGGGTGGGGCC  494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCCAGGCTGCGAATCCCATTCCCGCAGACGGGGACCTGGTTCCTGGCCCTCCGCTCCCTGTGCGGGGTGGGGCC  1850

Query  495  TCGGTTCGTGCGGTGCCGCAACGCGACGGCCGAGGTGTGGATGCGCACCTTCCTGTCCCCATGCGTGGACGACT  568
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1851  TCGGTTCGTGCGGTGCCGCAACGCGACGGCCGAGGTGCGGATGCGCACCTTCCTGTCCCCATGCGTGGACGACT  1924

Query  569  GCGGGCCCTACGGCCAGTGCAAGCTGCTGCGCACACACAATTATCTGTACGCAGCCTGCGAGTGCAAGGCCGGG  642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GCGGGCCCTACGGCCAGTGCAAGCTGCTGCGCACACACAATTATCTGTACGCAGCCTGCGAGTGCAAGGCCGGG  1998

Query  643  TGGAGAGGCTGGGGCTGCACCGACAGTGCAGATGCGCTCACCTATGGATTCCAGCTGCTGTCCACACTCCTGCT  716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGGAGAGGCTGGGGCTGCACCGACAGTGCAGATGCGCTCACCTATGGATTCCAGCTGCTGTCCACACTCCTGCT  2072

Query  717  CTGCCTGAGCAACCTCATGTTTCTGCCACCTGTGGTCCTGGCCATTCGGAGTCGATATGTGCTGGAAGCTGCAG  790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CTGCCTGAGCAACCTCATGTTTCTGCCACCTGTGGTCCTGGCCATTCGGAGTCGATATGTGCTGGAAGCTGCAG  2146

Query  791  TCTACACCTTCACCATGTTCTTCTCCACGGT-----ATGC------------------GGTGG-TGTCTGCATC  840
            |||||||||||||||||||||||||||||.|     ||||                  .|||| |.||||||||
Sbjct 2147  TCTACACCTTCACCATGTTCTTCTCCACGTTCTATCATGCCTGTGACCAGCCAGGCATCGTGGTTTTCTGCATC  2220

Query  841  TT--ATCACTGGGTGCT-------TGTG----CATGG---------TG-----GTGGGTCACAGTCTGTATTTC  887
            .|  |..||...|||||       ||||    |.|||         ||     |||||||||.|||   |||.|
Sbjct 2221  ATGGACTACGATGTGCTGCAGTTCTGTGATTTCCTGGGCTCCTTAATGTCCGTGTGGGTCACTGTC---ATTGC  2291

Query  888  CA--CCACGTTCT-----CCGAG--------GGT----------TTGGGA---------------ATGTCTGTG  921
            ||  .|.|||| |     |||.|        |||          .|||||               |||.||.||
Sbjct 2292  CATGGCTCGTT-TACAGCCCGTGGTCAAGCAGGTGCTGTATTTGCTGGGAGCTATGCTGCTGTCCATGGCTCTG  2364

Query  922  C--CTT------------------------------CACTGTGTCTT-----------------CTACAGACAG  946
            |  |||                              |.|.||.||||                 |.||||.|.|
Sbjct 2365  CAGCTTGACCGACATGGACTCTGGAACCTGCTTGGACCCAGTCTCTTCGCCCTGGGGATCTTGGCCACAGCCTG  2438

Query  947  AGACA--------------------GCAGTGCTTCCCA--------------------------------AACT  968
             ||||                    |||.||||.||||                                ..||
Sbjct 2439  -GACAGTACGCAGCGTCCGCCGCCGGCACTGCTACCCACCCACGTGGCGCCGCTGGCTTTTCTACTTGTGCCCT  2511

Query  969  GTCA-------TGCATAGATAATG--GTCAT---------TTTTGT-AAGACACATTGGAGTAAA---------  1014
            |.||       |||  ||..|.||  |||.|         |||||| .||||.|    |.|..||         
Sbjct 2512  GGCAGCCTTATTGC--AGGCAGTGCCGTCCTGCTTTATGCTTTTGTGGAGACCC----GGGACAACTACTTCTA  2579

Query 1015  --------------------------------------------------------------------------  1014
                                                                                      
Sbjct 2580  CATTCACAGCATTTGGCATATGCTCATTGCGGGCAGTGTGGGCTTCCTGCTGCCCCCTCGTGCCAAGACTGACC  2653

Query 1015  --------------------------------------------------------------------------  1014
                                                                                      
Sbjct 2654  ACGGGGTCCCATCTGGAGCCCGGGCCCGGGGCTGTGGTTACCAGCTATGCATCAACGAGCAGGAGGAGCTGGGC  2727

Query 1015  ---------------------------------------------  1014
                                                         
Sbjct 2728  CTCGTGGGCCCAGGAGGGGCCACTGTCAGCAGCATCTGTGCCAGC  2772

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