Nucleotide Global Alignment

Description

• Query: ccsbBroad304_08387
• Subject: NM_001291226.1
• Aligned Length: 1786
• Identities: 1375
• Gaps: 230

Alignment

Query    1  ATGACCGCAGAGGATTCCACCGCAGCCATGAGCAGTGACTCGGCCGCCGGGTCCTCGGCCAAGGTGCCCGAGGG  74
            |||||.||.||.||||||.||.|||||||||.|||.||..|..|.|..||||||||..|||||||.||.|||||
Sbjct    1  ATGACTGCTGAAGATTCCGCCACAGCCATGAACAGCGATCCAACAGTGGGGTCCTCCACCAAGGTACCGGAGGG  74

Query   75  CGTGGCGGGCGCGCCCAACGAGGCAGCACTGCTGGCGCTGATGGAGCGCACGGGCTACAGCATGGTGCAAGAGA  148
            .|||||||||||||||||.|||||.||||||.||||.|||||.||||||||.|||||||.||||||.|||||||
Sbjct   75  TGTGGCGGGCGCGCCCAATGAGGCTGCACTGTTGGCACTGATAGAGCGCACCGGCTACACCATGGTACAAGAGA  148

Query  149  ACGGGCAGCGCAAGTACGGCGGCCCACCGCCCGGCTGGGAGGGCCCGCACCCGCAGCGTGGCTGCGAGGTCTTC  222
            |||||||||||||||||||.||.||.|||||||||||||||||||||||.||.|||||||||||.|||||||||
Sbjct  149  ACGGGCAGCGCAAGTACGGTGGACCCCCGCCCGGCTGGGAGGGCCCGCATCCCCAGCGTGGCTGTGAGGTCTTC  222

Query  223  GTGGGCAAGATCCCGCGCGACGTGTACGAGGACGAGCTGGTGCCCGTGTTCGAGGCCGTGGGCCGCATCTACGA  296
            ||||||||||||||.||.||||||||.||.||.|||||||||||.|||||.|||.||||.||.||||||||.||
Sbjct  223  GTGGGCAAGATCCCACGTGACGTGTATGAAGATGAGCTGGTGCCTGTGTTTGAGACCGTAGGTCGCATCTATGA  296

Query  297  GCTGCGCCTCATGATGGACTTTGACGGCAAGAACCGCGGCTACGCCTTCGTCATGTACTGCCACAAGCACGAGG  370
            ||||||.|||||||||||.||.||.|||||||||||||||||.||||||||.|||||||||||||||||.||||
Sbjct  297  GCTGCGACTCATGATGGATTTCGATGGCAAGAACCGCGGCTATGCCTTCGTGATGTACTGCCACAAGCATGAGG  370

Query  371  CCAAGCGCGCAGTGCGTGAGCTCAACAACTACGAGATCCGCCCGGGCCGCCTGCTCGGCGTGTGCTGCAGCGTG  444
            |||||||.||.||.||.||.|||||||||||||||||||||||.|||||.|||||.||.||||||||.||.|||
Sbjct  371  CCAAGCGAGCCGTTCGGGAACTCAACAACTACGAGATCCGCCCCGGCCGTCTGCTGGGTGTGTGCTGTAGTGTG  444

Query  445  GACAACTGCCGCCTCTTCATCGGCGGGATCCCCAAGATGAAGAAGCGCGAGGAAATCCTGGAGGAGATTGCCAA  518
            ||||||||||||||||||||.||.||.||||||||||||||||||||||.|||.||||||||||||||.|||||
Sbjct  445  GACAACTGCCGCCTCTTCATTGGTGGCATCCCCAAGATGAAGAAGCGCGGGGAGATCCTGGAGGAGATCGCCAA  518

Query  519  GGTCACCGAGGGCGTGCTGGACGTGATCGTCTACGCCAGCGCGGCCGACAAGATGAAGAACCGCGGCTTCGCCT  592
            |||||||||||||||.||..|||||||.||.||.|||||.|||||.|||||||||||.|||||.||||||||||
Sbjct  519  GGTCACCGAGGGCGTACTCAACGTGATTGTGTATGCCAGTGCGGCAGACAAGATGAAAAACCGAGGCTTCGCCT  592

Query  593  TCGTGGAGTACGAGAGCCACCGCGCGGCTGCCATGGCTCGCCGCAAGCTCATGCCTGGCCGCATCCAGCTGTGG  666
            |.||||||||.||||||||.||.||.||.||||||||.|||||||||||||||||.||.||.|||||.||||||
Sbjct  593  TTGTGGAGTATGAGAGCCATCGTGCTGCAGCCATGGCACGCCGCAAGCTCATGCCGGGTCGGATCCAACTGTGG  666

Query  667  GGCCACCAGATCGCCGTGGACTGGGCCGAACCTGAGATCGACGTGGACGAGGACGTGATGGAGACCGTGAAGAT  740
            |||||||||||.||.||||||||||||||.||.|||||.|||||||||||.||.||||||.||||.||||||||
Sbjct  667  GGCCACCAGATTGCTGTGGACTGGGCCGAGCCAGAGATTGACGTGGACGAAGATGTGATGCAGACAGTGAAGAT  740

Query  741  CCTCTACGTGCGCAACCTCATGATCGAGACCACCGAGGACACCATCAAGAAGAGCTTCGGCCAGTTCAACCCCG  814
            |||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|
Sbjct  741  CCTCTACGTGCGCAACCTCATGATCGAGACCACCGAGGAGACCATCAAGAAGAGCTTTGGCCAGTTCAACCCAG  814

Query  815  GCTGCGTGGAGCGCGTCAAGAAGATCCGCGACTACGCCTTCGTGCACTTCACCAGCCGCGAGGATGCCGTGCAT  888
            ||||||||||..|.||||||||||||||.|||||||||||||||||||||||.|||||.||||||||.||||||
Sbjct  815  GCTGCGTGGAAAGGGTCAAGAAGATCCGTGACTACGCCTTCGTGCACTTCACTAGCCGTGAGGATGCTGTGCAT  888

Query  889  GCCATGAACAACCTCAACGGCACTGAGCTGGAGGGCTCGTGCCTGGAGGTCACGCTGGCCAAGCCCGTGGACAA  962
            ||.||||||||||||||||||||.|||||||||||.||.|||.|.||.||||||||||||||||||||||||||
Sbjct  889  GCTATGAACAACCTCAACGGCACAGAGCTGGAGGGATCCTGCTTAGAAGTCACGCTGGCCAAGCCCGTGGACAA  962

Query  963  GGAGCAGTACTCGCGCTACCAGAAGGCAGCCA---GGGGCGGCGGCGCGGCTGAGGC---AGCGCAGCAGCCCA  1030
            |||.||||||||.|||||||||||||||||||   |.||.||.|||.||||||||||   |||||||||.||||
Sbjct  963  GGAACAGTACTCCCGCTACCAGAAGGCAGCCAAGGGTGGTGGTGGCTCGGCTGAGGCCGTAGCGCAGCAACCCA  1036

Query 1031  GCTACGTGTACTCCTGCGACCCCTACACACTGGCCTACTACGGCTACCCCTACAACGCGCTCATTGGGCCCAAC  1104
            ||||||||||||||||.|||||||||||..||||||||||||||||||||||||||||.|||||.|||||||||
Sbjct 1037  GCTACGTGTACTCCTGTGACCCCTACACGTTGGCCTACTACGGCTACCCCTACAACGCTCTCATCGGGCCCAAC  1110

Query 1105  AGGGACTACTTTGTGAAAGCAGGCAGCATAAGAGGCCGAGGGCGAGGTGCAGCTGGCAACAGAGCCCCAGGGCC  1178
            .||||||||||.||||||                                                        
Sbjct 1111  CGGGACTACTTCGTGAAA--------------------------------------------------------  1128

Query 1179  TAGGGGTTCCTACCTCGGGGGATATTCTGCTGGCCGTGGTATATATAGCCGATATCATGAAGGGAAAGGAAAGC  1252
                                                                    |||               
Sbjct 1129  --------------------------------------------------------ATG---------------  1131

Query 1253  AGCAAGAAAAAGGATATGAACTGGTGCCGAATTTGGAAATCCCTACCGTCAACCCAGTTGCCATTAAACCTGGT  1326
                                                                                      
Sbjct 1132  --------------------------------------------------------------------------  1131

Query 1327  ACAGTAGCCATCCCTGCCATTGGGGCTCAGTATTCCATGTTTCCA-GCAGCTCCAGCCCCTAAAATGATTGAAG  1399
                  ||||||||||||||.||.||||||||.|||||| ||||| |||||.||||||||.|||||.||.||||
Sbjct 1132  ------GCCATCCCTGCCATCGGTGCTCAGTACTCCATG-TTCCAGGCAGCCCCAGCCCCGAAAATAATCGAAG  1198

Query 1400  ATGGCAAAATCCACACAGTGGAGCACATGATCAGCCCCATTGCTGTGCAGCCAGACCCAGCCAGTGCTGCTGCC  1473
            |||||||.|||||||||.||||.||||||||||||||||||||.||||||||.|||||.||||.||||||||||
Sbjct 1199  ATGGCAAGATCCACACAATGGAACACATGATCAGCCCCATTGCGGTGCAGCCTGACCCCGCCACTGCTGCTGCC  1272

Query 1474  GCCGCAGCCGCGGCCGCAGCCGCCGCAGCCGCTGTCATTCCCACTGTGTCGACGCCACCACCTTTCCAGGGCCG  1547
            ||.||||||   ||.||||||||.||.|||   ||||||||..|.||.||.||.||.|||||||||||||||||
Sbjct 1273  GCTGCAGCC---GCTGCAGCCGCTGCTGCC---GTCATTCCTGCGGTATCCACACCGCCACCTTTCCAGGGCCG  1340

Query 1548  CCCAATAACTCCAGTATACACGGTGGCTCCAAACGTTCAGAGAATTCCTACTGCCGGGATCTACGGGGCCAGTT  1621
            .|||||||||||.||.|||||.|||||.|||||.|||||||||||.||.||.|||||.||||||||||||||.|
Sbjct 1341  TCCAATAACTCCTGTGTACACCGTGGCACCAAATGTTCAGAGAATCCCCACCGCCGGCATCTACGGGGCCAGCT  1414

Query 1622  ACGTGCCATTTGCTGCTCCAGCTACAGCCACGATCGCCACACTACAGAAGAACGCGGCAGCCGCGGCCGCCGTG  1695
            ||||.||.|||||||||||.||.||.|||||.|||||||||||||||||||||      ||||||||.||||||
Sbjct 1415  ACGTCCCCTTTGCTGCTCCCGCCACTGCCACAATCGCCACACTACAGAAGAAC------GCCGCGGCTGCCGTG  1482

Query 1696  TATGGAGGATACGCAGGCTACATACCTCAGGCCTTCCCTGCTGCTGCCATTCAGGTCCCCATCCCCGACGTCTA  1769
            |||||.||.|||||.|||||||||||||||||||||||.||||||   .|.|||||.|||||||.|||||||||
Sbjct 1483  TATGGGGGCTACGCCGGCTACATACCTCAGGCCTTCCCCGCTGCT---CTCCAGGTGCCCATCCACGACGTCTA  1553

Query 1770  CCAGACATAC  1779
            ||||||.|||
Sbjct 1554  CCAGACTTAC  1563