Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08390
Subject:
XR_001743474.2
Aligned Length:
3872
Identities:
1135
Gaps:
2732

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCTCTTTAAAAAGCTGACGATAAGTGGGACTAAGTGAAAATGAATGGGCAGGTGAATAATAAAGTCCTTTGAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAAGTAAATGACGCGGCAGATGAAGGGCACGCACGTCTATTGTGCAAATTCATTCAGTGGTTATCTCATAATA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CACTTATCAAGTCCTTATTACCACGAACCTCACCCACCGTGGACAAGAGAAACATAAGCAGGAAAAAAGGAGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAATAAACACACGCCTGTCCATAATAAAACTCGCTCTTGAAGACTCAGCGGCAGCCCTGCACCGGAGACTGAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GACTTGCGCGGCTGTGACCTCCGCCCTGCAGCGGACCCTCGACTGCCCTGCACTGCGGCTCTGGAGGCCCCGAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCAGTGCATGGGAAAGAAATCCTCACTATCAGAAAACAGAGGGGCAATCTGCTGCTCTCCCTTTCCGGCCAAAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACGTCACCCATCAACCGGATACCTACCAAGAGGCTTTCAGAGGAGGCGCCCAAGGTCTCCCAGGCCCGCCCCTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCAATCACGCTCCGCTCAGCCCCCTCAACTTTTGGCCTCCGGGAAGTTCGCAGCGTTCTCACGCTTGGCAGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTTCCCGCCAAGGCTTCCGGAAAATCCTTTAAAAAGCAACGCTTGCGCTGGGCGGGGCTTGGTGCGCTCTCAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTTATCTCCAAATTCTGGGTGTTGTCGCGAGGGCTGCTGTGTCCGGAACTTCCGGTTCCGGTCAGGGTCCGCG  740

Query    1  --------------ATGCGGTCCCGGGTTCTGTGGGGCGCTGCCCGGTGGCTCTGGCCCCGCCGGGCCGTTGGC  60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATCTCGGACTAAGGATGCGGTCCCGGGTTCTGTGGGGCGCTGCCCGGTGGCTCTGGCCCCGCCGGGCCGTTGGC  814

Query   61  CCAGCCCGCCGGCCCCTGAGCTCCGGTAGCCCGCCGCTGGAGGAGCTGTTCGCCCGGGGCGGGCCCTTGCGGAC  134
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  815  CCAGCCCGCCGGCCCCTGAGCTCCGGTAGCCCGCCGCTGGAGGAGCTGTTCACCCGGGGCGGGCCCTTGCGGAC  888

Query  135  CTTCCTCGAGCGCCAGGCGGGGTCTGAAGCCCATTTGAAGGTCAGGAGGCCCGAGTTGCTGGCGGTGATCAAAC  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTTCCTCGAGCGCCAGGCGGGGTCTGAAGCCCATTTGAAGGTCAGGAGGCCCGAGTTGCTGGCGGTGATCAAAC  962

Query  209  TGCTGAACGAGAAGGAGCAGGAGCTGCGGGAGACTGAGCACTTGCTGCACGATGAGAATGAAGATTTAAGGAAA  282
            ||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGCTGAACGAGAAGGAGCGGGAGCTGCGGGAGACTGAGCACTTGCTGCACGATGAGAATGAAGATTTAAGGAAA  1036

Query  283  CTTGCAGAGAATGAAATCACTTTGTGTCAAAAAGAAATAACTCAGCTGAAGCATCAG-----------------  339
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 1037  CTTGCAGAGAATGAAATCACTTTGTGTCAAAAAGAAATAACTCAGCTGAAGCATCAGGTATGGTATTTCTGCAA  1110

Query  340  -----------------------------ATTA-------------------------------------TCTT  347
                                         ||||                                     |.||
Sbjct 1111  AGAATAAAGCATTTGTGCTATTCTTAGGCATTAAAGTTTATTAAAGGTTTATAAAAACAAGTGACTAGCTTGTT  1184

Query  348  ACTTTT------------GGTT----------------------------------------CCCTCA------  363
            |||.||            ||||                                        |||.||      
Sbjct 1185  ACTGTTTAGAATAAACTGGGTTTTTTAAATTTATTTTCTAGATTTATTGAGGTATAAATTGACCCCCAAAATTG  1258

Query  364  --------------------------------------------------------------------------  363
                                                                                      
Sbjct 1259  CATATATTTAAGGTATATGATGTGATGTTTTGATATATGCATACATTTTGAAATGATTATGACTATCAATAAAC  1332

Query  364  --------------------------------------------------------------------------  363
                                                                                      
Sbjct 1333  TGGTTTTTAAAGAACAAACTTCACATGGTCCTGTTTTCATCATACTAAAAGTACTGTAGCGCTCTCACAGAAAG  1406

Query  364  --------------------------------------------------------------------------  363
                                                                                      
Sbjct 1407  ATAAATGTCACAGTGATAGTATTTTCTGGAAAGGCAGCGAAATAGTGGCATATCTTCCCTTTTTTTTTTTTTTT  1480

Query  364  --------------------------------------------------------------------------  363
                                                                                      
Sbjct 1481  TTTTTTAAGAAGACTGGAGGTAGACATGGGGCAGAAGAGGTTATATGAAAGGACTTCAAAAGTTTGTGGAAAAC  1554

Query  364  --------------------------------------------------------------------------  363
                                                                                      
Sbjct 1555  TGGAATTAAAAGATAAAAAAATATATATATAAACTTTAATTTATTGACATAAGTGCCACCAGCTATCAAGTTCA  1628

Query  364  ---------GAAGAAACAGATGAAAATGATTTGATCCTGGAAGTAACTGCAGGAGTTGGAGGTCAGGAGGCAAT  428
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AGACACTTTGAAGAAACAGATGAAAATGATTTGATCCTGGAAGTAACTGCAGGAGTTGGAGGTCAGGAGGCAAT  1702

Query  429  GTTGTTTACATCAGAGATATTTGATATGTATCAGCAATATGCTGCATTTAAAAGATGGCATTTTGAAACCCTGG  502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GTTGTTTACATCAGAGATATTTGATATGTATCAGCAATATGCTGCATTTAAAAGATGGCATTTTGAAACCCTGG  1776

Query  503  AATATTTTCCAAGTGAACTAGGTGGCCTTAGACATGCATCTGCCAGCATTGGGGGTTCAGAAGCCTATAGGCAC  576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AATATTTTCCAAGTGAACTAGGTGGCCTTAGACATGCATCTGCCAGCATTGGGGGTTCAGAAGCCTATAGGCAC  1850

Query  577  ATGAAATTTGAAGGAGGTGTTCACAGAGTACAAAGAGTGCCAAAGACAGAAAAGCAAGGCCGCGTCCATACTAG  650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  ATGAAATTTGAAGGAGGTGTTCACAGAGTACAAAGAGTGCCAAAGACAGAAAAGCAAGGCCGCGTCCATACTAG  1924

Query  651  CACCATGACTGTAGCAATATTACCCCAGCCTACTGAGATTAATCTGGTGATTAATCCGAAAGATTTGAGAATTG  724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CACCATGACTGTAGCAATATTACCCCAGCCTACTGAGATTAATCTGGTGATTAATCCGAAAGATTTGAGAATTG  1998

Query  725  ACACTAAGCGAGCCAGTGGAGCTGGGGGGCAGCATGTAAATACCACGGACAGTGCTGTCCGGATAGTTCATCTT  798
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  ACACTAAGCGAGCCAGTGGAGCTGGGGGGCAGCATGTAAATACCACGGACAGTGCTGTCCGGATAGTTCATCTT  2072

Query  799  CCAA----------------------------------------------------------------------  802
            ||||                                                                      
Sbjct 2073  CCAACAGGAAGAAGAAAAAGGATGAGGAGGAAAAGTATTCCTTGATAATAAGTAAAGAAGATTTTTTTATTAAA  2146

Query  803  -------------------------CAGGTGTTGTTTCTGAATGTCAACAAGAGAGATCTCAGCTGAAAAATAA  851
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  ACTTTTTAATTCTCGTAACACTATTCAGGTGTTGTTTCTGAATGTCAACAAGAGAGATCTCAGCTGAAAAATAA  2220

Query  852  AGAGCTGGCTATGACAAAGTTACGTGCAAAACTGTACAGCATGCATCTAGAAGAAGAAATAAATAAAAGACAGA  925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  AGAGCTGGCTATGACAAAGTTACGTGCAAAACTGTACAGCATGCATCTAGAAGAAGAAATAAATAAAAGACAGA  2294

Query  926  ATGCTAGAAAAATTCAGATTGGAAGTAAAGGAAGATCAGAGAAAATAAGAACATATAATTTTCCACAGAACCGG  999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  ATGCTAGAAAAATTCAGATTGGAAGTAAAGGAAGATCAGAGAAAATAAGAACATATAATTTTCCACAGAACCGG  2368

Query 1000  GTCACAGATCACAGAATAAACAAGACGCTGCATGATCTTGAAACTTTTATGCAAGGAGATTATCTACTGGATGA  1073
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  GTCACAGATCACAGAATAAACAAGACGCTGCATGATCTTGAAACTTTTATGCAAGGAGATTATCTACTGGATGA  2442

Query 1074  ACTTGTACAGTCATTGAAGGAATACGCCGATTATGAATCTTTAGTAGAAATTATTTCCCAAAAAGTT-------  1140
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 2443  ACTTGTACAGTCATTGAAGGAATACGCCGATTATGAATCTTTAGTAGAAATTATTTCCCAAAAAGTTTAAGTTG  2516

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 2517  ATTTGTTATTTATAGACTTTCGTAGCTTAGAAAAATTCTACAGTACATCCACATAGGGTGAAAGTACCCTTACT  2590

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 2591  CTCTTGAAAAACGTTGAGTTAACACAGTTGGAGGTAATATGCATATTCTGAAGTCATAGATAATTTACACAGAT  2664

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 2665  CTCTCTCAATGCATTAGCAAAAATCATACAATATACAGATGGTCCTCGATTTACATTGTGGTTAATTCCCAATA  2738

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 2739  AACCCATCATAAGTTAAAAATGCATATAACGTTAGCAACACAGCAGTCTCCTAATTAATGACAGCTTGACTTAA  2812

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 2813  CAATTTTCCAACTTTACCATGGTGTGAAAGAGGTATGATTCCTAAGCCCTAAGGAGCTCCTCAGCTTGAAATGG  2886

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 2887  GGCTGCATCCCTATAAACCCATCATAAAGTCAAAAAATCCTAAAACATAAGTTGGTGACCATCTGTAATCATGA  2960

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 2961  TGTGGTGGTAAATCTTGGACGCTACCTTACAATAACTAGACAAAGGAAAATCATCCTTTGTCCTGTTCTGTGTA  3034

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3035  AATATTTAATGAATGATCAAAACTTCAGTTTAAATATTATGAAAAACTTTAAACATAAAGTAGTAGAAATAAGA  3108

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3109  CAGTAAATACTGTATCCTAATATCCAGTCAGGATACAGAAACCATACCATTAACTTGAACAGGGATAATTTTAA  3182

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3183  TATAAAAACTGTTAACTGATAATGGTATTAACTTTTAAGAGGGATGAAAGAGAGCTATGATGTCCTAGGACTGA  3256

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3257  GAGTACCCCAGGAAAGAATACCCTTGAAAGGGTCTCCCCTTCCCCATGGTGAAGTCAGGCCTAATGGAGAGAGT  3330

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3331  GGCTACAGCCTACTCAGTGATTGGGAAATTCCCTGTCTTGCCCTGGGCCAGAGCTGGTGTACCGCTGGTGGATC  3404

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3405  AGGTCTTACAAGCAAAGAACCTCACACTCCCAACTGGTAAGCCAGAAGCCTCTTGCTAGGGTGTGAGCAAAACT  3478

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3479  TGGACAGGAACTCTCAGTAGATGTTTGTGTTTGTCAAGATTCTCCAGACAAACTTCCTTAAAAGGATTGGCTTG  3552

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3553  TGTTGTTATTATTAAGTCTAACAAGTCCAAAAGCTGGAGTGTGAGGCAGGAGGCTGGAAACCCAGGAAAGCTGA  3626

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3627  TGGTGCAAGGTCCAGTCCAAAGGTATCTGTTGGAGGATTCTCTTGTTCTGGGAAGAGGACGGTCTTTTTTTCTC  3700

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3701  TTCAGACCTTCACCTGACTGGATCAAGCCCACTAACATCGAGGAGGACAGTCTGCATTACTCAGAGTTCACTGA  3774

Query 1141  --------------------------------------------------------------------------  1140
                                                                                      
Sbjct 3775  TTGATTTAAATGTCAATCTCATATAAAACACCCTCACAGAAACACCTAGAATAATGTTTGACCTTATAATTGGA  3848

Query 1141  ------------------------  1140
                                    
Sbjct 3849  AAATCAGAGCAAAAGTTAAATCTC  3872

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