Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08390
- Subject:
- XR_001743474.2
- Aligned Length:
- 3872
- Identities:
- 1135
- Gaps:
- 2732
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTCTTTAAAAAGCTGACGATAAGTGGGACTAAGTGAAAATGAATGGGCAGGTGAATAATAAAGTCCTTTGAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAAGTAAATGACGCGGCAGATGAAGGGCACGCACGTCTATTGTGCAAATTCATTCAGTGGTTATCTCATAATA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACTTATCAAGTCCTTATTACCACGAACCTCACCCACCGTGGACAAGAGAAACATAAGCAGGAAAAAAGGAGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGAATAAACACACGCCTGTCCATAATAAAACTCGCTCTTGAAGACTCAGCGGCAGCCCTGCACCGGAGACTGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACTTGCGCGGCTGTGACCTCCGCCCTGCAGCGGACCCTCGACTGCCCTGCACTGCGGCTCTGGAGGCCCCGAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAGTGCATGGGAAAGAAATCCTCACTATCAGAAAACAGAGGGGCAATCTGCTGCTCTCCCTTTCCGGCCAAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACGTCACCCATCAACCGGATACCTACCAAGAGGCTTTCAGAGGAGGCGCCCAAGGTCTCCCAGGCCCGCCCCTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCAATCACGCTCCGCTCAGCCCCCTCAACTTTTGGCCTCCGGGAAGTTCGCAGCGTTCTCACGCTTGGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGTTCCCGCCAAGGCTTCCGGAAAATCCTTTAAAAAGCAACGCTTGCGCTGGGCGGGGCTTGGTGCGCTCTCAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTTATCTCCAAATTCTGGGTGTTGTCGCGAGGGCTGCTGTGTCCGGAACTTCCGGTTCCGGTCAGGGTCCGCG 740
Query 1 --------------ATGCGGTCCCGGGTTCTGTGGGGCGCTGCCCGGTGGCTCTGGCCCCGCCGGGCCGTTGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATCTCGGACTAAGGATGCGGTCCCGGGTTCTGTGGGGCGCTGCCCGGTGGCTCTGGCCCCGCCGGGCCGTTGGC 814
Query 61 CCAGCCCGCCGGCCCCTGAGCTCCGGTAGCCCGCCGCTGGAGGAGCTGTTCGCCCGGGGCGGGCCCTTGCGGAC 134
|||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 815 CCAGCCCGCCGGCCCCTGAGCTCCGGTAGCCCGCCGCTGGAGGAGCTGTTCACCCGGGGCGGGCCCTTGCGGAC 888
Query 135 CTTCCTCGAGCGCCAGGCGGGGTCTGAAGCCCATTTGAAGGTCAGGAGGCCCGAGTTGCTGGCGGTGATCAAAC 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTTCCTCGAGCGCCAGGCGGGGTCTGAAGCCCATTTGAAGGTCAGGAGGCCCGAGTTGCTGGCGGTGATCAAAC 962
Query 209 TGCTGAACGAGAAGGAGCAGGAGCTGCGGGAGACTGAGCACTTGCTGCACGATGAGAATGAAGATTTAAGGAAA 282
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCTGAACGAGAAGGAGCGGGAGCTGCGGGAGACTGAGCACTTGCTGCACGATGAGAATGAAGATTTAAGGAAA 1036
Query 283 CTTGCAGAGAATGAAATCACTTTGTGTCAAAAAGAAATAACTCAGCTGAAGCATCAG----------------- 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTTGCAGAGAATGAAATCACTTTGTGTCAAAAAGAAATAACTCAGCTGAAGCATCAGGTATGGTATTTCTGCAA 1110
Query 340 -----------------------------ATTA-------------------------------------TCTT 347
|||| |.||
Sbjct 1111 AGAATAAAGCATTTGTGCTATTCTTAGGCATTAAAGTTTATTAAAGGTTTATAAAAACAAGTGACTAGCTTGTT 1184
Query 348 ACTTTT------------GGTT----------------------------------------CCCTCA------ 363
|||.|| |||| |||.||
Sbjct 1185 ACTGTTTAGAATAAACTGGGTTTTTTAAATTTATTTTCTAGATTTATTGAGGTATAAATTGACCCCCAAAATTG 1258
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1259 CATATATTTAAGGTATATGATGTGATGTTTTGATATATGCATACATTTTGAAATGATTATGACTATCAATAAAC 1332
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1333 TGGTTTTTAAAGAACAAACTTCACATGGTCCTGTTTTCATCATACTAAAAGTACTGTAGCGCTCTCACAGAAAG 1406
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1407 ATAAATGTCACAGTGATAGTATTTTCTGGAAAGGCAGCGAAATAGTGGCATATCTTCCCTTTTTTTTTTTTTTT 1480
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1481 TTTTTTAAGAAGACTGGAGGTAGACATGGGGCAGAAGAGGTTATATGAAAGGACTTCAAAAGTTTGTGGAAAAC 1554
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1555 TGGAATTAAAAGATAAAAAAATATATATATAAACTTTAATTTATTGACATAAGTGCCACCAGCTATCAAGTTCA 1628
Query 364 ---------GAAGAAACAGATGAAAATGATTTGATCCTGGAAGTAACTGCAGGAGTTGGAGGTCAGGAGGCAAT 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGACACTTTGAAGAAACAGATGAAAATGATTTGATCCTGGAAGTAACTGCAGGAGTTGGAGGTCAGGAGGCAAT 1702
Query 429 GTTGTTTACATCAGAGATATTTGATATGTATCAGCAATATGCTGCATTTAAAAGATGGCATTTTGAAACCCTGG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTTGTTTACATCAGAGATATTTGATATGTATCAGCAATATGCTGCATTTAAAAGATGGCATTTTGAAACCCTGG 1776
Query 503 AATATTTTCCAAGTGAACTAGGTGGCCTTAGACATGCATCTGCCAGCATTGGGGGTTCAGAAGCCTATAGGCAC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AATATTTTCCAAGTGAACTAGGTGGCCTTAGACATGCATCTGCCAGCATTGGGGGTTCAGAAGCCTATAGGCAC 1850
Query 577 ATGAAATTTGAAGGAGGTGTTCACAGAGTACAAAGAGTGCCAAAGACAGAAAAGCAAGGCCGCGTCCATACTAG 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATGAAATTTGAAGGAGGTGTTCACAGAGTACAAAGAGTGCCAAAGACAGAAAAGCAAGGCCGCGTCCATACTAG 1924
Query 651 CACCATGACTGTAGCAATATTACCCCAGCCTACTGAGATTAATCTGGTGATTAATCCGAAAGATTTGAGAATTG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CACCATGACTGTAGCAATATTACCCCAGCCTACTGAGATTAATCTGGTGATTAATCCGAAAGATTTGAGAATTG 1998
Query 725 ACACTAAGCGAGCCAGTGGAGCTGGGGGGCAGCATGTAAATACCACGGACAGTGCTGTCCGGATAGTTCATCTT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ACACTAAGCGAGCCAGTGGAGCTGGGGGGCAGCATGTAAATACCACGGACAGTGCTGTCCGGATAGTTCATCTT 2072
Query 799 CCAA---------------------------------------------------------------------- 802
||||
Sbjct 2073 CCAACAGGAAGAAGAAAAAGGATGAGGAGGAAAAGTATTCCTTGATAATAAGTAAAGAAGATTTTTTTATTAAA 2146
Query 803 -------------------------CAGGTGTTGTTTCTGAATGTCAACAAGAGAGATCTCAGCTGAAAAATAA 851
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 ACTTTTTAATTCTCGTAACACTATTCAGGTGTTGTTTCTGAATGTCAACAAGAGAGATCTCAGCTGAAAAATAA 2220
Query 852 AGAGCTGGCTATGACAAAGTTACGTGCAAAACTGTACAGCATGCATCTAGAAGAAGAAATAAATAAAAGACAGA 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGAGCTGGCTATGACAAAGTTACGTGCAAAACTGTACAGCATGCATCTAGAAGAAGAAATAAATAAAAGACAGA 2294
Query 926 ATGCTAGAAAAATTCAGATTGGAAGTAAAGGAAGATCAGAGAAAATAAGAACATATAATTTTCCACAGAACCGG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 ATGCTAGAAAAATTCAGATTGGAAGTAAAGGAAGATCAGAGAAAATAAGAACATATAATTTTCCACAGAACCGG 2368
Query 1000 GTCACAGATCACAGAATAAACAAGACGCTGCATGATCTTGAAACTTTTATGCAAGGAGATTATCTACTGGATGA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GTCACAGATCACAGAATAAACAAGACGCTGCATGATCTTGAAACTTTTATGCAAGGAGATTATCTACTGGATGA 2442
Query 1074 ACTTGTACAGTCATTGAAGGAATACGCCGATTATGAATCTTTAGTAGAAATTATTTCCCAAAAAGTT------- 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 ACTTGTACAGTCATTGAAGGAATACGCCGATTATGAATCTTTAGTAGAAATTATTTCCCAAAAAGTTTAAGTTG 2516
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 2517 ATTTGTTATTTATAGACTTTCGTAGCTTAGAAAAATTCTACAGTACATCCACATAGGGTGAAAGTACCCTTACT 2590
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 2591 CTCTTGAAAAACGTTGAGTTAACACAGTTGGAGGTAATATGCATATTCTGAAGTCATAGATAATTTACACAGAT 2664
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 2665 CTCTCTCAATGCATTAGCAAAAATCATACAATATACAGATGGTCCTCGATTTACATTGTGGTTAATTCCCAATA 2738
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 2739 AACCCATCATAAGTTAAAAATGCATATAACGTTAGCAACACAGCAGTCTCCTAATTAATGACAGCTTGACTTAA 2812
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 2813 CAATTTTCCAACTTTACCATGGTGTGAAAGAGGTATGATTCCTAAGCCCTAAGGAGCTCCTCAGCTTGAAATGG 2886
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 2887 GGCTGCATCCCTATAAACCCATCATAAAGTCAAAAAATCCTAAAACATAAGTTGGTGACCATCTGTAATCATGA 2960
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 2961 TGTGGTGGTAAATCTTGGACGCTACCTTACAATAACTAGACAAAGGAAAATCATCCTTTGTCCTGTTCTGTGTA 3034
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3035 AATATTTAATGAATGATCAAAACTTCAGTTTAAATATTATGAAAAACTTTAAACATAAAGTAGTAGAAATAAGA 3108
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3109 CAGTAAATACTGTATCCTAATATCCAGTCAGGATACAGAAACCATACCATTAACTTGAACAGGGATAATTTTAA 3182
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3183 TATAAAAACTGTTAACTGATAATGGTATTAACTTTTAAGAGGGATGAAAGAGAGCTATGATGTCCTAGGACTGA 3256
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3257 GAGTACCCCAGGAAAGAATACCCTTGAAAGGGTCTCCCCTTCCCCATGGTGAAGTCAGGCCTAATGGAGAGAGT 3330
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3331 GGCTACAGCCTACTCAGTGATTGGGAAATTCCCTGTCTTGCCCTGGGCCAGAGCTGGTGTACCGCTGGTGGATC 3404
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3405 AGGTCTTACAAGCAAAGAACCTCACACTCCCAACTGGTAAGCCAGAAGCCTCTTGCTAGGGTGTGAGCAAAACT 3478
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3479 TGGACAGGAACTCTCAGTAGATGTTTGTGTTTGTCAAGATTCTCCAGACAAACTTCCTTAAAAGGATTGGCTTG 3552
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3553 TGTTGTTATTATTAAGTCTAACAAGTCCAAAAGCTGGAGTGTGAGGCAGGAGGCTGGAAACCCAGGAAAGCTGA 3626
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3627 TGGTGCAAGGTCCAGTCCAAAGGTATCTGTTGGAGGATTCTCTTGTTCTGGGAAGAGGACGGTCTTTTTTTCTC 3700
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3701 TTCAGACCTTCACCTGACTGGATCAAGCCCACTAACATCGAGGAGGACAGTCTGCATTACTCAGAGTTCACTGA 3774
Query 1141 -------------------------------------------------------------------------- 1140
Sbjct 3775 TTGATTTAAATGTCAATCTCATATAAAACACCCTCACAGAAACACCTAGAATAATGTTTGACCTTATAATTGGA 3848
Query 1141 ------------------------ 1140
Sbjct 3849 AAATCAGAGCAAAAGTTAAATCTC 3872
