Nucleotide Global Alignment

Description

• Query: ccsbBroad304_08447
• Subject: XR_001749590.2
• Aligned Length: 3353
• Identities: 1950
• Gaps: 1402

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTAAAGGGGGCAGTGACTGCGGCTGGGCGGGAGTCCGGGTCGGCTTGGCTGAGCGGGGGCGGTGCTGGGCAGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGCGGCCGCTCCCTCCCGGACTCCCGGCCTCCCGGCCTCCCTGGTCCCGCCTGGGAAGGGATGCAAGGAAGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTCCGGCGCTGCGCTCCGAGGCGGGAGACAGCGTCCCCCTCCGCCCCTCGGGTCCTGGCGCCTCAGAGCCCGGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCAGGCCGCGGAACGGTGATGCTCGGGCCGGACGGGCGGGCGCGGATCCCTGCGTCCCGCTGAAAATGTGTGTC  296

Query    1  -----------------------------------------------------------------ATGAAGGTG  9
                                                                             |||||||||
Sbjct  297  TGACATGCAAGCTCAGTGGGGCAGAGACCCGTGGATTGCTGTGCCCTGCCCTCCGGACCTGGATCATGAAGGTG  370

Query   10  TTGGGAAGAAGCTTCTTCTGGGTGCTGTTTCCCGTCCTTCCCTGGGCGGTGCAGGCTGTGGAGCACGAGGAGGT  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTGGGAAGAAGCTTCTTCTGGGTGCTGTTTCCCGTCCTTCCCTGGGCGGTGCAGGCTGTGGAGCACGAGGAGGT  444

Query   84  GGCGCAGCGTGTGATCAAACTGCACCGCGGGCGAGGGGTGGCTGCCATGCAGAGCCGGCAGTGGGTCCGGGACA  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGCGCAGCGTGTGATCAAACTGCACCGCGGGCGAGGGGTGGCTGCCATGCAGAGCCGGCAGTGGGTCCGGGACA  518

Query  158  GCTGCAGGAAGCTCTCAGGGCTTCTCCGCCAGAAGAATGCAGTTCTGAACAAACTGAAAACTGCAATTGGAGCA  231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCTGCAGGAAGCTCTCAGGGCTTCTCCGCCAGAAGAATGCAGTTCTGAACAAACTGAAAACTGCAATTGGAGCA  592

Query  232  GTGGAGAAAGACGTGGGCCTGTCGGATGAAGAGAAACTGTTTCAGGTGCACACGTTTGAAATTTTCCAGAAAGA  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTGGAGAAAGACGTGGGCCTGTCGGATGAAGAGAAACTGTTTCAGGTGCACACGTTTGAAATTTTCCAGAAAGA  666

Query  306  GCTGAATGAAAGTGAAAATTCCGTTTTCCAAGCTGTCTACGGACTGCAGAGAGCCCTGCAGGGGGATTACAAAG  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTGAATGAAAGTGAAAATTCCGTTTTCCAAGCTGTCTACGGACTGCAGAGAGCCCTGCAGGGGGATTACAAAG  740

Query  380  ATGTCGTGAACATGAAGGAGAGCAGCCGGCAGCGCCTGGAGGCCCTGAGAGAGGCTGCAATAAAGGAAGAAACA  453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATGTCGTGAACATGAAGGAGAGCAGCCGGCAGCGCCTGGAGGCCCTGAGAGAGGCTGCAATAAAGGAAGAAACA  814

Query  454  GAATATATGGAACTTCTGGCAGCAGAAAAACATCAAGTTGAAGCCCTTAAAAATATGCAACATCAAAACCAAAG  527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAATATATGGAACTTCTGGCAGCAGAAAAACATCAAGTTGAAGCCCTTAAAAATATGCAACATCAAAACCAAAG  888

Query  528  TTTATCCATGCTTGACGAGATTCTTGAAGATGTAAGAAAGGCAGCGGATCGTCTGGAGGAAGAGATAGAGGAAC  601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTTATCCATGCTTGACGAGATTCTTGAAGATGTAAGAAAGGCAGCGGATCGTCTGGAGGAAGAGATAGAGGAAC  962

Query  602  ATGCTTTTGACGACAATAAATCAGTCAAGGGGGTCAATTTTGAGGCAGTTCTGAGGGTGGAGGAAGAAGAGGCC  675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATGCTTTTGACGACAATAAATCAGTCAAGGGGGTCAATTTTGAGGCAGTTCTGAGGGTGGAGGAAGAAGAGGCC  1036

Query  676  AATTCTAAGCAAAATATAACAAAACGAGAAGTGGAGGATGACTTGGGTCTTAGCATGCTGATTGACTCCCAGAA  749
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AATTCTAAGCAAAATATAACAAAACGAGAAGTGGAGGATGACTTGGGTCTTAGCATGCTGATTGACTCCCAGAA  1110

Query  750  CAACCAGTATATTTTGACCAAGCCCAGAGATTCAACCATCCCACGTGCAGATCACCACTTTATAAAGGACATTG  823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAACCAGTATATTTTGACCAAGCCCAGAGATTCAACCATCCCACGTGCAGATCACCACTTTATAAAGGACATTG  1184

Query  824  TTACCATAGGAATGCTGTCCTTGCCTTGTGGCTGGCTATGTACAGCCATAGGATTGCCTACAATGTTTGGTTAT  897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTACCATAGGAATGCTGTCCTTGCCTTGTGGCTGGCTATGTACAGCCATAGGATTGCCTACAATGTTTGGTTAT  1258

Query  898  ATTATTTGTGGTGTACTTCTGGGACCTTCAGGACTAAATAGTATTAAGTCTATTGTGCAAGTGGAGACATTAGG  971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ATTATTTGTGGTGTACTTCTGGGACCTTCAGGACTAAATAGTATTAAGTCTATTGTGCAAGTGGAGACATTAGG  1332

Query  972  AGAATTTGGGGTGTTTTTTACTCTTTTTCTTGTTGGCTTAGAATTTTCTCCAGAAAAGCTAAGAAAGGTGTGGA  1045
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGAATTTGGGGTGTTTTTTACTCTTTTTCTTGTTGGCTTAGAATTTTCTCCAGAAAAGCTAAGAAAGGTGTGGA  1406

Query 1046  AGATTTCCTTACAAGGGCCGTGTTACATGACACTGTTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTG  1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGATTTCCTTACAAGGGCCGTGTTACATGACACTGTTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTG  1480

Query 1120  CGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCAAGCACACCCCTCGTGTCCAGGTT  1193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCAAGCACACCCCTCGTGTCCAGGTT  1554

Query 1194  CCTCATGGGCAGTGCTCGGGGTGACAAAGAA-------------------------------------------  1224
            |||||||||||||||||||||||||||||||                                           
Sbjct 1555  CCTCATGGGCAGTGCTCGGGGTGACAAAGAAGAGTTGTTCCTTAGTCTCTTCAGCTAGTCATGGCTACTACTGT  1628

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1629  TCTGCCCTCGTGAGCCGGTGTTTGTCTGCCGGGCCCGCCTTGGTCACACAGTGAAGGCTCATTCCGTGTGGTGG  1702

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1703  CTTGGGTGCGTCTGCACCATTTGGACACCAAGTCTGTGTTGGTCACACAGTGAAGGCTCATTCCGTGTGGTGGC  1776

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1777  TTGGGTGCGTCTGCACCATTTGGACACCAAGTCTGTCTTGGTCTCACAGCGAAGGCTCATTCCGTGTGGTGGCT  1850

Query 1225  --GGCGACATTGACTACAGCACCGTGCTCCTCGGCATGCTGGTGACGCAGGACGTGCAGCTCGGGCTCTTCATG  1296
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TGGGCGACATTGACTACAGCACCGTGCTCCTCGGCATGCTGGTGACGCAGGACGTGCAGCTCGGGCTCTTCATG  1924

Query 1297  GCCGTCATGCGGACTCTCATACAGGCGGGCGCCAGTGCATCTTCTAGCATTGTCGTGGAAGTTCTCCGAATCCT  1370
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GCCGTCATGCCGACTCTCATACAGGCGGGCGCCAGTGCATCTTCTAGCATTGTCGTGGAAGTTCTCCGAATCCT  1998

Query 1371  GGTTTTGATTGGTCAGATTCTTTTTTCACTAGCGGCGGTTTTTCTTTTATGTCTTGTTATAAAGAAGTATCTCA  1444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GGTTTTGATTGGTCAGATTCTTTTTTCACTAGCGGCGGTTTTTCTTTTATGTCTTGTTATAAAGAAGTATCTCA  2072

Query 1445  TTGGACCCTATTATCGGAAGCTGCACATGGAAAGCAAGGGGAACAAAGAAATCCTGATCTTGGGAATATCTGCC  1518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TTGGACCCTATTATCGGAAGCTGCACATGGAAAGCAAGGGGAACAAAGAAATCCTGATCTTGGGAATATCTGCC  2146

Query 1519  TTTATCTTCTTAATGTTAACGGTCACGGAGCTGCTGGACGTCTCCATGGAGCTGGGCTGTTTCCTGGCTGGAGC  1592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TTTATCTTCTTAATGTTAACGGTCACGGAGCTGCTGGACGTCTCCATGGAGCTGGGCTGTTTCCTGGCTGGAGC  2220

Query 1593  GCTCGTCTCCTCTCAGGGCCCCGTGGTCACCGAGGAGATCGCCACCTCCATCGAACCCATCCGCGACTTCCTGG  1666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GCTCGTCTCCTCTCAGGGCCCCGTGGTCACCGAGGAGATCGCCACCTCCATCGAACCCATCCGCGACTTCCTGG  2294

Query 1667  CCATCGTTTTCTTCGCCTCCATAGGGCTCCACGTGTTCCCCACGTTTGTGGCGTACGAGCTCACGGTGCTGGTG  1740
            ||||||||||||||||||||||                                                    
Sbjct 2295  CCATCGTTTTCTTCGCCTCCAT----------------------------------------------------  2316

Query 1741  TTCCTCACCTTGTCAGTGGTGGTGATGAAGTTTCTCCTGGCGGCGCTGGTCCTGTCTCTCATTCTGCCGAGGAG  1814
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2317  ----------------------------AGTTTCTCCTGGCGGCGCTGGTCCTGTCTCTCATTCTGCCGAGGAG  2362

Query 1815  CAGCCAGTACATCAAGTGGATCGTCTCTGCGGGGCTTGCCCAGGTCAGCGAGTTTTCCTTTGTCCTGGGGAGCC  1888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2363  CAGCCAGTACATCAAGTGGATCGTCTCTGCGGGGCTTGCCCAGGTCAGCGAGTTTTCCTTTGTCCTGGGGAGCC  2436

Query 1889  GGGCGCGAAGAGCGGGCGTCATCTCTCGGGAGGTGTACCTCCTTATACTGAGTGTGACCACGCTCAGCCTCTTG  1962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437  GGGCGCGAAGAGCGGGCGTCATCTCTCGGGAGGTGTACCTCCTTATACTGAGTGTGACCACGCTCAGCCTCTTG  2510

Query 1963  CTCGCCCCGGTGCTGTGGAGAGCTGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAGCCTC-----  2031
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 2511  CTCGCCCCGGTGCTGTGGAGAGCTGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAGCCTCTGATG  2584

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 2585  GCTCGGAGATGATGGACCGTGGAAGGGAAGCGTCTGTGGGGAGTGAGCGCTTAGATGGCCAGCAGCTGCTCCTT  2658

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 2659  CTGGGAAGCTCGCACCTTGGCAACAGAACAGCCCTCTAGCAGAGCGTCAGTGCAGTCGTGTTATCCCGGCTTTT  2732

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 2733  ACAGAATATTCTTGTCCTATTTTAGAATTTTCCGGAGTAGTTTATTTGCAGTCTGTTGATTATGTGCAGTAGAC  2806

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 2807  CCGGGACACTGCGTTTTACCGATCACCTTGAATGTGGTGCCTGGATGTGCCTTTTTTTTTTTTCCCTGAAATTA  2880

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 2881  TTATTAATTTTCTATTGTGAGTTCATCAGTTCATAGTTTTTTTAGTAAAGAAGCAAAATTAAAAGGCTTTTAAA  2954

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 2955  AATGTACAACTTCAGAATTATAATCTGTTAGTCAAATATTTGTTATTAAACATTTCTGTAATATGAAGTTGTAA  3028

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 3029  TCCTGGCCGTGAGCTTGGAAGCTTACTTTTGATTCTTAAAGCCTATGTTTTCTAAAATGAGACAAATACGGATG  3102

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 3103  TCTATTTGCCTTTTATTGTAACTTTTAAATGAAATAATTTCATGTCAATTTCTATTAGATATATCACTTAAAAT  3176

Query 2032  --------------------------------------------------------------------------  2031
                                                                                      
Sbjct 3177  ATTTGGTTTTAAATCACAAGAATATGTATTCTTTAATAAAGATAATTTATGATCATGGTATAATTAATTGAAAT  3250

Query 2032  -----------------------  2031
                                   
Sbjct 3251  TTATTAAAATCTGTTTTTATTAA  3273