Nucleotide Global Alignment

Description

• Query: ccsbBroad304_08479
• Subject: XR_881437.2
• Aligned Length: 4180
• Identities: 2420
• Gaps: 1418

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGGCCAGGCCCTTTCTGGGGCTGCCGGGAAGAACGTGCGTGCGGCTGGGCCGGAGCACGGCTCATGTGCTGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTCCCTCAGGTTATCTGACCGTCTCTGGCCTTCTTTTCACAGGTGAGCAGCGGGGACGGTGGTAGACTGAGCT  148

Query    1  ------------ATGGCTTCCTCCAACCCTCCTCCACAGCCTGCCATAGGAGATCAGCTGGTTCCAGGAGTCCC  62
                        |||||||||||.||||||||||||||||||||||||||||.||..||||.|||..|.|..||
Sbjct  149  GGACCCTGTCTGATGGCTTCCTCGAACCCTCCTCCACAGCCTGCCATAGGAGCTCCCCTGGCTCCCAGCGCTCC  222

Query   63  AGGCCCCTCCTCTGAGGCAGAGGACGACCCAGGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACA  136
            ||||||||||.|.||||..|||||.|||.|.|||||.||.|||||||||||||||||||||||.||.|||||||
Sbjct  223  AGGCCCCTCCCCCGAGGTGGAGGAGGACTCCGGAGAAGCCTTTGAGTTTGATGACAGTGATGAGGAGGAGGACA  296

Query  137  CCAGCGCAGCCCTGGGCGTCCCCAGCCTTGCTCCTGAGAGGGACACAGACCCCCCACTGATCCACTTGGACTCC  210
            |||||.|.|.|||||..|||||..||||.||.|||||||||||||||||.|||.|.||||||..|||.|||.|.
Sbjct  297  CCAGCTCTGGCCTGGTTGTCCCTGGCCTCGCCCCTGAGAGGGACACAGAGCCCTCGCTGATCTGCTTTGACACT  370

Query  211  ATCCCTGTCACTGACCCAGACCCAGCAGCTGCTCCACCCGGCACAGGGGTGCCAGC--CTG-GGTGAGCAATGG  281
            .||||.|.|.|.||||..||||||||||||||.||||||...||||.||   ||.|  ||| |||.||||||||
Sbjct  371  GTCCCGGGCTCAGACCTGGACCCAGCAGCTGCACCACCCCAGACAGAGG---CACCCACTGTGGTCAGCAATGG  441

Query  282  GGATGCAGCGGACGCAGCCTTCTCCGGGGCCCGGCACTCCAGCTGGAAGCGGAAGAGTTCCCGTCGCATTGACC  355
            ||||||.|.||.||||||..||||.||||.|||||.|||||||||||||||||||||.||.|||||.|||||||
Sbjct  442  GGATGCGGTGGGCGCAGCGATCTCTGGGGTCCGGCGCTCCAGCTGGAAGCGGAAGAGCTCACGTCGAATTGACC  515

Query  356  GGTTCACTTTCCCCGCCCTGGAAGAGGATGTGATTTATGACGACGTCCCCTGCGAGAGCCCAGATGCGCATCAG  429
            |.|||||||||||.||||||||.||.||||||||||||||||||||||||||.|||||||||||.||.||||||
Sbjct  516  GCTTCACTTTCCCTGCCCTGGAGGAAGATGTGATTTATGACGACGTCCCCTGTGAGAGCCCAGACGCCCATCAG  589

Query  430  CCCGGGGCAGAGAGGAACCTGCTCTACGAGGATGCGCACCGGGCTGGGGCCCCTCGGCAGGCGGAGGACCTAGG  503
            ||||||||.|||.||..|||..|.||||||||||.|||.||.||.||.||.||.||..||.|.|||||||||||
Sbjct  590  CCCGGGGCCGAGCGGGGCCTCGTTTACGAGGATGTGCATCGTGCAGGAGCACCGCGTGAGACCGAGGACCTAGG  663

Query  504  CTGGAGCTCCAGTGAGTTCGAGAGCTACAGCGAGGACTCGGGGGAGGAGGCCAAGCCGGAGGTCGAGGTCGAGC  577
            |||||||||.||||||||.||||||||||||||||||||.|||||||||.||||.|||      ||||.|||||
Sbjct  664  CTGGAGCTCTAGTGAGTTTGAGAGCTACAGCGAGGACTCTGGGGAGGAGACCAAACCG------GAGGCCGAGC  731

Query  578  CCGCCAAGCACCGAGTGTCCTTCCAGCCC---------------------------------------------  606
            ||.|.||||||||||.|||||||||||||                                             
Sbjct  732  CCACTAAGCACCGAGGGTCCTTCCAGCCCAAGCTTTCTCCAGACCTGACTAGGCTAAAGGAGAGATACGTCAGG  805

Query  607  ------------------------------------------------------------------------AA  608
                                                                                    ||
Sbjct  806  ACTAAGAGAGACATCTTGGCTTTGAGAGTTGGGGGTAGAGACATGCAGGAGCTGAAGCTCAAGTGCGATTGTAA  879

Query  609  GATGACCCAGCTCATGAAGGCCGCCAAGAGCGGGACCAAGGATGGGCTGGAGAAGACACGGATGGCCGTGATGC  682
            ||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||||||||||.||||
Sbjct  880  GATGACCCAGCTCATGAAGGCCGCCAAGAGCGGGACCAGGGATGGGCTGGAGAAGACCCGGATGGCCGTCATGC  953

Query  683  GCAAAGTCTCCTTCCTGCACAGGAAGGACGTCCTCGGTGACTCGGAGGAGGAGGACATGGGGCTCCTGGAGGTC  756
            |.|||||||||||.|||||.|||||.||.||||||||||||||.||.||.||.||.|||||||||||||||||.
Sbjct  954  GAAAAGTCTCCTTTCTGCATAGGAAAGATGTCCTCGGTGACTCAGAAGAAGAAGATATGGGGCTCCTGGAGGTT  1027

Query  757  AGCGTTTCGGACATCAAGCCCCCAGCCCCAGAGCTGGGCCCCATGCCAGAGGGCCTGAGCCCTCAGCAGGTGGT  830
            .|.||..|.||||||||.||.||.||.||||||||||||||||||||.||.|||.||||.||||||||||||||
Sbjct 1028  GGTGTGACAGACATCAAACCTCCCGCGCCAGAGCTGGGCCCCATGCCGGATGGCTTGAGTCCTCAGCAGGTGGT  1101

Query  831  CCGGAGGCATATCCTGGGCTCCATCGTGCAGAGCGAAGGCAGCTACGTGGAGTCTCTGAAGCGGATACTCCAGG  904
            ||||||.||.|||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1102  CCGGAGACACATCCTAGGCTCCATCGTGCAGAGCGAAGGCAGCTACGTGGAGTCACTGAAGCGGATACTCCAGG  1175

Query  905  ACTACCGCAACCCCCTGATGGAGATGGAGCCCAAGGCGCTGAGCGCCCGCAAGTGCCAGGTGGTGTTCTTCCGC  978
            |.|||||.|||||.||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1176  ATTACCGTAACCCACTAATGGAGATGGAGCCCAAGGCGCTGAGCGCCCGCAAGTGTCAGGTGGTGTTCTTCCGC  1249

Query  979  GTGAAGGAGATCCTGCACTGCCACTCCATGTTCCAGATCGCCCTGTCCTCCCGCGTGGCTGAGTGGGATTCCAC  1052
            |||||||||||.||.||.||.||||||||||||||||||||.|||||||||||||||||.||||||||.|||||
Sbjct 1250  GTGAAGGAGATTCTACATTGTCACTCCATGTTCCAGATCGCTCTGTCCTCCCGCGTGGCCGAGTGGGACTCCAC  1323

Query 1053  CGAGAAGATCGGGGACCTCTTCGTGGCCTCGTTTTCCAAGTCCATGGTGCTAGATGTGTACAGTGACTACGTGA  1126
            .||||||||.||.||||||||.|||||.||.||.||||||||||||||.||||||||.|||||.|||||.||||
Sbjct 1324  AGAGAAGATTGGAGACCTCTTTGTGGCTTCATTCTCCAAGTCCATGGTCCTAGATGTATACAGCGACTATGTGA  1397

Query 1127  ACAACTTCACCAGTGCCATGTCCATCATCAAGAAGGCCTGCCTCACCAAGCCTGCCTTCCTCGAGTTCCTCAAG  1200
            ||||||||||||..||||||||||||||||||||||||||.|||||||||||.||.|||||.|||||.||||||
Sbjct 1398  ACAACTTCACCAACGCCATGTCCATCATCAAGAAGGCCTGTCTCACCAAGCCAGCGTTCCTTGAGTTTCTCAAG  1471

Query 1201  CGACGGCAGGTGTGCAGCCCAGACCGTGTCACCCTCTACGGGCTGATGGTCAAGCCCATCCAGAGGTTCCCACA  1274
            ||.||||||||||||||..|.|||||.|||||||||||.|||.|||||||.||.||..|.|||||.||.|||||
Sbjct 1472  CGGCGGCAGGTGTGCAGTACGGACCGAGTCACCCTCTATGGGTTGATGGTGAAACCTGTTCAGAGATTTCCACA  1545

Query 1275  GTTCATACTCCTGCTTCAGGACATGCTGAAGAACACCCCCAGGGGCCATCCGGACAGGCTGTCGCTGCAGCTGG  1348
            ||||||.|||||.||.||||||||||||||||||||.|||.|||||||.||.||||||.|||||||||||||.|
Sbjct 1546  GTTCATCCTCCTACTCCAGGACATGCTGAAGAACACTCCCCGGGGCCACCCTGACAGGTTGTCGCTGCAGCTAG  1619

Query 1349  CCCTCACAGAGCTGGAGACGCTGGCTGAGAAGCTGAACGAGCAGAAGCGGCTGGCTGACCAGGTGGCTGAGATC  1422
            |||||||.||||||||||||||||||||||||||||||||||||||||||.||||.||||||||||||||||||
Sbjct 1620  CCCTCACGGAGCTGGAGACGCTGGCTGAGAAGCTGAACGAGCAGAAGCGGTTGGCCGACCAGGTGGCTGAGATC  1693

Query 1423  CAGCAGCTGACCAAGAGCGTCAGTGACCGCAGCAGCCTCAACAAGCTGTTGACCTCAGGCCAGCGGCAGCTGCT  1496
            |||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1694  CAGCAGCTGACCAAGAGTGTCAGTGACCGCAGCAGCCTCAACAAGCTGTTGACCTCTGGCCAGCGGCAGCTGCT  1767

Query 1497  CCTGTGTGAGACGTTGACGGAGACCGTGTACGGTGACCGCGGGCAGCTAATTAAGTCCAAGGAGCGTCGGGTCT  1570
            .|||||||||||..||||.|||||.|||||.||.|||||.||||||||.||.||||||||||||||..||||||
Sbjct 1768  TCTGTGTGAGACACTGACTGAGACGGTGTATGGAGACCGAGGGCAGCTGATCAAGTCCAAGGAGCGCAGGGTCT  1841

Query 1571  TCCTGCTCAACGACATGCTTGTCTGTGCCAACATCAACTTCAAGCCTGCCAACCACAGGGGCCAGCTGGAGATC  1644
            ||||||||||.||||||||.|||||.||||||||||||||||||||..|||||||||||||||||||.||||||
Sbjct 1842  TCCTGCTCAATGACATGCTGGTCTGCGCCAACATCAACTTCAAGCCCTCCAACCACAGGGGCCAGCTAGAGATC  1915

Query 1645  AGCAGCCTGGTGCCCCTGGGGCCCAAGTATGTGGTGAAGTGGAACACGGCGCTGCCCCAGGTGCAGGTGGTGGA  1718
            |||||||||||.||.||||||||||||||.|||||||||||||||||.||.|||||.||||||||||||||.||
Sbjct 1916  AGCAGCCTGGTACCTCTGGGGCCCAAGTACGTGGTGAAGTGGAACACAGCTCTGCCTCAGGTGCAGGTGGTAGA  1989

Query 1719  GGTGGGCCAGGACGGTGGCACCTATGACAAGGACAATGTGCTCATCCAGCACTCAGGCGCCAAGAAGGCCTCTG  1792
            ||||||.|||||.|||||||||||.|||||.||||||.|||||||||||||..|.||.||||||||||||.|||
Sbjct 1990  GGTGGGTCAGGATGGTGGCACCTACGACAAAGACAATCTGCTCATCCAGCATGCTGGAGCCAAGAAGGCCACTG  2063

Query 1793  CCTCAGGGCAGGCTCAGAATAAGGTGTACCTCGGCCCCCCACGCCTCTTCCAGGAGCTGCAGGACCTGCAGAAG  1866
            |..||||||||||.|||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064  CTGCAGGGCAGGCCCAGAACAAGGTGTACCTGGGCCCCCCACGCCTCTTCCAGGAGCTGCAGGACCTGCAGAAG  2137

Query 1867  GACCTGGCCGTGGTGGAGCAGATCACGCTTCTCATCAGCACGCTGCACGGCACCTACCAGAACCTGAACATGAC  1940
            ||||||||||||||||||||||||||.||.|||||||||||..||||.|||||.||||||||.|||||||||||
Sbjct 2138  GACCTGGCCGTGGTGGAGCAGATCACCCTCCTCATCAGCACCTTGCATGGCACTTACCAGAATCTGAACATGAC  2211

Query 1941  TGTGGCTCAAGACTGGTGCCTGGCCCTGCAGAGGCTGATGCGGGTGAAGGAGGAAGAGATCCACTCGGCCAACA  2014
            ||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.|||||||||||||
Sbjct 2212  TGTGGCCCAAGACTGGTGCCTGGCGCTGCAGAGGCTGATGCGGGTGAAGGAGGAGGAGATTCACTCGGCCAACA  2285

Query 2015  AGTGCCGTCTCAGGCTCCTGCTTCCTGGGAAACCCGACAAGTCCGGCCGCCCCATTAGCTTCATGGTGGTTTTC  2088
            |||||||.||.|||||.|||||.||.|||||.||.||||||||.|||||.|||||.||.|||||||||||.|||
Sbjct 2286  AGTGCCGCCTGAGGCTGCTGCTCCCCGGGAAGCCAGACAAGTCTGGCCGGCCCATCAGTTTCATGGTGGTCTTC  2359

Query 2089  ATCACCCCCAACCCCCTGAGCAAGATTTCCTGGGTCAACAGGTTACATTTGGCCAAAATCGGACTCCGGGAGGA  2162
            ||||||||.||||||||||||||||||||||||||||||||.|||||.|||||.||.||.|||||..|||||||
Sbjct 2360  ATCACCCCGAACCCCCTGAGCAAGATTTCCTGGGTCAACAGATTACACTTGGCAAAGATTGGACTAAGGGAGGA  2433

Query 2163  GAACCAGCCAGGCTGGCTATGCCCGGATGAGGACAAGAAGAGCAAAGCCCCATTCTGGTGCCCGATCCTGGCCT  2236
            ||||||||||||.|||||.||.||.||||||||||||||.|||||||||||.|||||||||||.||||||||||
Sbjct 2434  GAACCAGCCAGGATGGCTGTGTCCCGATGAGGACAAGAAAAGCAAAGCCCCGTTCTGGTGCCCCATCCTGGCCT  2507

Query 2237  GCTGCATCCCTGCCTTCTCCTCCCGGGCACTCAGCCTGCAG---------------------------------  2277
            |||||.||||.||.||||||||||||.|.|||||.||||||                                 
Sbjct 2508  GCTGCGTCCCCGCTTTCTCCTCCCGGACCCTCAGTCTGCAGAGCCCGCCCCTCCATCTGGAGCAACCGTTGTCT  2581

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 2582  ATCCTCTCCCAAGCAGATGAGGACCCTGAGCTCTGGGACGGGCGAGCGAGCGTGGGACCCAGCACAGATAAATA  2655

Query 2278  -------------------------------------------------------------------CTTGGGG  2284
                                                                               |||||||
Sbjct 2656  GTCGCAGGAGCCGTGCGGGCTGGGCTGTAGACTGGGGCGCTAAGAGCTGACAGAGCACCTTGGCGATCTTGGGG  2729

Query 2285  CCCTGGTCCACAGTCCTGTCAACTGTCCCCTGCTGGGTTTCTCAGCCGTCAGCACCTCCCTTCCACAGGGCTAC  2358
            .||||||||||||||||||.||||.||||||||||||.|||||.||.||||||||.||||||||||||||||||
Sbjct 2730  GCCTGGTCCACAGTCCTGTTAACTCTCCCCTGCTGGGCTTCTCGGCGGTCAGCACTTCCCTTCCACAGGGCTAC  2803

Query 2359  CTCTGGGTCGGGGGCGGACAGGAAGGCGCAGGGGGCCAGGTGGAAATCTTTTCCTTGAACCGGCCCTCGCCCCG  2432
            ||.|||||.||.||.||.|||||.||.||.||.|||||||||||.|||||.|||.||||||||||.||.||.||
Sbjct 2804  CTTTGGGTTGGCGGTGGTCAGGAGGGTGCTGGTGGCCAGGTGGAGATCTTCTCCCTGAACCGGCCTTCACCGCG  2877

Query 2433  CACCGTCAAGTCCTTCCCACTGGCAGCCCCTGTGCTCTGCATGGAGTATATCCCGGAGCTGGAGGAGGAGGCGG  2506
            |||.|||||||||||||||.||||.|||||||||||||||||.||||||||.||.||.|.||||||||||||.|
Sbjct 2878  CACGGTCAAGTCCTTCCCAGTGGCGGCCCCTGTGCTCTGCATAGAGTATATTCCAGATCCGGAGGAGGAGGCTG  2951

Query 2507  A--GAGCAGAGACGAGAGCCCGACAGTTGCTGACCCCTCGGCCACGGTGCATCCAACCATCTGCCTCGGGCTCC  2578
            |  |.||||||  |||||||.|.|||...|.||.|||||||.|||.||||||||.||..|||||||.||.||.|
Sbjct 2952  AGGGTGCAGAG--GAGAGCCGGGCAGCCACCGATCCCTCGGTCACAGTGCATCCCACTGTCTGCCTTGGACTGC  3023

Query 2579  AGGATGGCAGCATCCTCCTCTACAGCAGTGTGGACACTGGCACCCAGTGCCTGGTGAGCTGCAGGAGCCCAGGT  2652
            ||||||||||||||||.||.||..|||||||||||||.||.|||||||||||||..|.|||||.|||||||||.
Sbjct 3024  AGGATGGCAGCATCCTACTGTATGGCAGTGTGGACACGGGTACCCAGTGCCTGGCCACCTGCAAGAGCCCAGGC  3097

Query 2653  CTGCAGCCTGTGCTCTGCCTGCGACACAGCCCCTTCCACCTGCTCGCTGGCCTGCAGGATGGGACCCTTGCTGC  2726
            |.|||||||||||||||||||||.||||||||.|||.|||||||.||.|||||.|||||.||||||||.|||||
Sbjct 3098  CCGCAGCCTGTGCTCTGCCTGCGTCACAGCCCTTTCTACCTGCTTGCCGGCCTCCAGGACGGGACCCTCGCTGC  3171

Query 2727  TTACCCTCGGACCAGCGGAGGTG----TCCTGTGGGACCTGGAGAGCCCTCCCGTGTGCCTGACTGTGGGGCCC  2796
            .||.||||||||||   |.||||    ||| .|||||||||||||||||||||.|                   
Sbjct 3172  CTATCCTCGGACCA---GTGGTGACATTCC-CTGGGACCTGGAGAGCCCTCCCAT-------------------  3222

Query 2797  GGGCCTGTCCGCACCCTGTTGAGCCTGGAGGATGCCGTGTGGGCCAGCTGTGGGCCCCGGGTCACTGTCCTGGA  2870
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 2871  AGCCACCACCCTGCAGCCTCAGCAAAGCTTCGAGGCGCACCAGGACGAGGCAGTGAGCGTGACACACATGGTGA  2944
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 2945  AGGCGGGCAGCGGCGTCTGGATGGCCTTCTCCTCCGGCACCTCCATCCGCCTCTTCCACACTGAGACCCTGGAG  3018
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3019  CATCTGCAAGAGATCAACATCGCCACCAGGACCACCTTCCTCCTGCCAGGCCAGAAGCACTTGTGTGTCACCAG  3092
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3093  CCTCCTGATCTGCCAGGGTCTGCTCTGGGTGGGCACTGACCAGGGTGTCATCGTCCTGCTGCCCGTGCCTCGGC  3166
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3167  TGGAAGGCATCCCCAAGATCACAGGGAAAGGCATGGTCTCACTCAATGGGCACTGTGGGCCTGTGGCCTTCCTG  3240
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3241  GCTGTGGCTACCAGCATCCTGGCCCCTGACATCCTGCGGAGTGACCAGGAGGAGGCTGAGGGGCCCCGGGCTGA  3314
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3315  GGAGGACAAGCCAGACGGGCAGGCACACGAGCCCATGCCCGACAGCCACGTGGGCCGAGAGCTGACCCGCAAGA  3388
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3389  AGGGCATCCTCTTGCAGTACCGCCTGCGCTCCACCGCACACCTCCCGGGCCCGCTGCTCTCCATGCGGGAGCCG  3462
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3463  GCGCCTGCTGATGGCGCAGCTTTGGAGCACAGCGAGGAGGACGGCTCCATTTACGAGATGGCCGACGACCCCGA  3536
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3537  CGTCTGGGTGCGCAGCCGGCCCTGCGCCCGCGACGCCCACCGCAAGGAGATTTGCTCTGTGGCCATCATCTCCG  3610
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3611  GCGGGCAGGGCTACCGCAACTTTGGCAGCGCTCTGGGCAGCAGTGGGAGGCAGGCCCCGTGTGGGGAGACGGAC  3684
                                                                                      
Sbjct 3223  --------------------------------------------------------------------------  3222

Query 3685  AGCACCCTCCTCATCTGGCAGGTGCCCTTGATGCTA  3720
                                                
Sbjct 3223  ------------------------------------  3222