Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08479
- Subject:
- XR_946688.2
- Aligned Length:
- 4011
- Identities:
- 2307
- Gaps:
- 1704
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACAGGTTGTGAGCCAGTGACTTGTCTCAGTAGCTGAAACTGCAGCCCTGACTCCAGCTAATGCGATTTCTGGTC 74
Query 1 -------------------------------------------------------ATGGCTTCCTCCAACCCTC 19
|||||||||||||||||||
Sbjct 75 TTCTTTCCACAGGTGTGTAGCTGGGACGGTGCTGGTCTGAGCTGGACCTTGTCTGATGGCTTCCTCCAACCCTC 148
Query 20 CTCCACAGCCTGCCATAGGAGATCAGCTGGTTCCAGGAGTCCCAGGCCCCTCCTCTGAGGCAGAGGACGACCCA 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTCCACAGCCTGCCATAGGAGATCAGCTGGTTCCAGGAGTCCCAGGCCCCTCCTCTGAGGCAGAGGACGACCCA 222
Query 94 GGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACACCAGCGCAGCCCTGGGCGTCCCCAGCCTTGC 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACACCAGCGCAGCCCTGGGCGTCCCCAGCCTTGC 296
Query 168 TCCTGAGAGGGACACAGACCCCCCACTGATCCACTTGGACTCCATCCCTGTCACTGACCCAGACCCAGCAGCTG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCTGAGAGGGACACAGACCCCCCACTGATCCACTTGGACTCCATCCCTGTCACTGACCCAGACCCAGCAGCTG 370
Query 242 CTCCACCCGGCACAGGGGTGCCAGCCTGGGTGAGCAATGGGGATGCAGCGGACGCAGCCTTCTCCGGGGCCCGG 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCCACCCGGCACAGGGGTGCCAGCCTGGGTGAGCAATGGGGATGCAGCGGACGCAGCCTTCTCCGGGGCCCGG 444
Query 316 CACTCCAGCTGGAAGCGGAAGAGTTCCCGTCGCATTGACCGGTTCACTTTCCCCGCCCTGGAAGAGGATGTGAT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CACTCCAGCTGGAAGCGGAAGAGTTCCCGTCGCATTGACCGGTTCACTTTCCCCGCCCTGGAAGAGGATGTGAT 518
Query 390 TTATGACGACGTCCCCTGCGAGAGCCCAGATGCGCATCAGCCC---GGGGCAGAGAGGAACCTGCTCTACGAGG 460
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 519 TTATGACGACGTCCCCTGCGAGAGCCCAGATGCGCATCAGCCCGCAGGGGCAGAGAGGAACCTGCTCTACGAGG 592
Query 461 ATGCGCACCGGGCTGGGGCCCCTCGGCAGGCGGAGGACCTAGGCTGGAGCTCCAGTGAGTTCGAGAGCTACAGC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGCGCACCGGGCTGGGGCCCCTCGGCAGGCGGAGGACCTAGGCTGGAGCTCCAGTGAGTTCGAGAGCTACAGC 666
Query 535 GAGGACTCGGGGGAGGAGGCCAAGCCGGAGGTCGAGGTCGAGCCCGCCAAGCACCGAGTGTCCTTCCAGCCCAA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGGACTCGGGGGAGGAGGCCAAGCCGGAGGTCGAGGTCGAGCCCGCCAAGCACCGAGTGTCCTTCCAGCCCAA 740
Query 609 GATGACCCAGCTCATGAAGGCCGCCAAGAGCGGGACCAAGGATGGGCTGGAGAAGACACGGATGGCCGTGATGC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GATGACCCAGCTCATGAAGGCCGCCAAGAGCGGGACCAAGGATGGGCTGGAGAAGACACGGATGGCCGTGATGC 814
Query 683 GCAAAGTCTCCTTCCTGCACAGGAAGGACGTCCTC---------GGTGACTCGGAGGAGGAGGACATGGGGCTC 747
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 815 GCAAAGTCTCCTTCCTGCACAGGAAGGACGTCCTCGACTTTCCAGGTGACTCGGAGGAGGAGGACATGGGGCTC 888
Query 748 CTGGAGGTCAGCGTTTCGGACATCAAGCCCCCAGCCCCAGAGCTGGGCCCCATGCCAGAGGGCCTGAGCCCTCA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGGAGGTCAGCGTTTCGGACATCAAGCCCCCAGCCCCAGAGCTGGGCCCCATGCCAGAGGGCCTGAGCCCTCA 962
Query 822 GCAGGTGGTCCGGAGGCATATCCTGGGCTCCATCGTGCAGAGCGAAGGCAGCTACGTGGAGTCTCTGAAGCGGA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCAGGTGGTCCGGAGGCATATCCTGGGCTCCATCGTGCAGAGCGAAGGCAGCTACGTGGAGTCTCTGAAGCGGA 1036
Query 896 TACTCCAGGACTACCGCAACCCCCTGATGGAGATGGAGCCCAAGGCGCTGAGCGCCCGCAAGTGCCAGGTGGTG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TACTCCAGGACTACCGCAACCCCCTGATGGAGATGGAGCCCAAGGCGCTGAGCGCCCGCAAGTGCCAGGTGGTG 1110
Query 970 TTCTTCCGCGTGAAGGAGATCCTGCACTGCCACTCCATGTTCCAGATCGCCCTGTCCTCCCGCGTGGCTGAGTG 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCTTCCGCGTGAAGGAGATCCTGCACTGCCACTCCATGTTCCAGATCGCCCTGTCCTCCCGCGTGGCTGAGTG 1184
Query 1044 GGATTCCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGTTTTCCAAGTCCATGGTGCTAGATGTGTACAGTG 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGATTCCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGTTTTCCAAGTCCATGGTGCTAGATGTGTACAGTG 1258
Query 1118 ACTACGTGAACAACTTCACCAGTGCCATGTCCATCATCAAGAAGGCCTGCCTCACCAAGCCTGCCTTCCTCGAG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACTACGTGAACAACTTCACCAGTGCCATGTCCATCATCAAGAAGGCCTGCCTCACCAAGCCTGCCTTCCTCGAG 1332
Query 1192 TTCCTCAAGCGACGGCAGGTGTGCAGCCCAGACCGTGTCACCCTCTACGGGCTGATGGTCAAGCCCATCCAGAG 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTCCTCAAGCGACGGCAGGTGTGCAGCCCAGACCGTGTCACCCTCTACGGGCTGATGGTCAAGCCCATCCAGAG 1406
Query 1266 GTTCCCACAGTTCATACTCCTGCTTCAGGACATGCTGAAGAACACCCCCAGGGGCCATCCGGACAGGCTGTCGC 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTTCCCACAGTTCATACTCCTGCTTCAGGACATGCTGAAGAACACCCCCAGGGGCCATCCGGACAGGCTGTCGC 1480
Query 1340 TGCAGCTGGCCCTCACAGAGCTGGAGACGCTGGCTGAGAAGCTGAACGAGCAGAAGCGGCTGGCTGACCAGGTG 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGCAGCTGGCCCTCACAGAGCTGGAGACGCTGGCTGAGAAGCTGAACGAGCAGAAGCGGCTGGCTGACCAGGTG 1554
Query 1414 GCTGAGATCCAGCAGCTGACCAAGAGCGTCAGTGACCGCAGCAGCCTCAACAAGCTGTTGACCTCAGGCCAGCG 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GCTGAGATCCAGCAGCTGACCAAGAGCGTCAGTGACCGCAGCAGCCTCAACAAGCTGTTGACCTCAGGCCAGCG 1628
Query 1488 GCAGCTGCTCCTGTGTGAGACGTTGACGGAGACCGTGTACGGTGACCGCGGGCAGCTAATTAAGTCCAAGGAGC 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GCAGCTGCTCCTGTGTGAGACGTTGACGGAGACCGTGTACGGTGACCGCGGGCAGCTAATTAAGTCCAAGGAGC 1702
Query 1562 GTCGGGTCTTCCTGCTCAACGACATGCTTGTCTGTGCCAACATCAACTTCAAGCCTGCCAACCACAGGGGCCAG 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTCGGGTCTTCCTGCTCAACGACATGCTTGTCTGTGCCAACATCAACTTCAAGCCTGCCAACCACAGGGGCCAG 1776
Query 1636 CTGGAGATCAGCAGCCTGGTGCCCCTGGGGCCCAAGTATGTGGTGAAGTGGAACACGGCGCTGCCCCAGGTGCA 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTGGAGATCAGCAGCCTGGTGCCCCTGGGGCCCAAGTATGTGGTGAAGTGGAACACGGCGCTGCCCCAGGTGCA 1850
Query 1710 GGTGGTGGAGGTGGGCCAGGACGGTGGCACCTATGACAAGGACAATGTGCTCATCCAGCACTCAGGCGCCAAGA 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGTGGTGGAGGTGGGCCAGGACGGTGGCACCTATGACAAGGACAATGTGCTCATCCAGCACTCAGGCGCCAAGA 1924
Query 1784 AGGCCTCTGCCTCAGGGCAGGCTCAGAATAAGGTGTACCTCGGCCCCCCACGCCTCTTCCAGGAGCTGCAGGAC 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGGCCTCTGCCTCAGGGCAGGCTCAGAATAAGGTGTACCTCGGCCCCCCACGCCTCTTCCAGGAGCTGCAGGAC 1998
Query 1858 CTGCAGAAGGACCTGGCCGTGGTGGAGCAGATCACGCTTCTCATCAGCACGCTGCACGGCACCTACCAGAACCT 1931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CTGCAGAAGGACCTGGCCGTGGTGGAGCAGATCACGCTTCTCATCAGCACGCTGCACGGCACCTACCAGAACCT 2072
Query 1932 GAACATGACTGTGGCTCAAGACTGGTGCCTGGCCCTGCAGAGGCTGATGCGGGTGAAGGAGGAAGAGATCCACT 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GAACATGACTGTGGCTCAAGACTGGTGCCTGGCCCTGCAGAGGCTGATGCGGGTGAAGGAGGAAGAGATCCACT 2146
Query 2006 CGGCCAACAAGTGCCGTCTCAGGCTCCTGCTTCCTGGGAAACCCGACAA------------------------- 2054
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CGGCCAACAAGTGCCGTCTCAGGCTCCTGCTTCCTGGGAAACCCGACAAAGGCACGTGGTCAGACATGTAAGGT 2220
Query 2055 -------------------------------------------------------------------------- 2054
Sbjct 2221 GTCTAAGACCTGTGGACAGCTGACCGCTGACCAGGTGGAGTCACAGCCTGCAGAGGCTCTGCCGGGCACAAAGC 2294
Query 2055 ---------------------------------------------------GTCCGGCCGCCCCATTAGCTTCA 2077
|||||||||||||||||||||||
Sbjct 2295 CAGAGGCTCCTGGAGCCAGGCTGGGGAGCGTGGCTCAGCCACCCTGGCCAGGTCCGGCCGCCCCATTAGCTTCA 2368
Query 2078 TGGTGGTTTTCATCACCCCCAACCCCCTGAGCAAGATTTCCTGGGTCAACAGGTTACATTTGGCCAAAATCGGA 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TGGTGGTTTTCATCACCCCCAACCCCCTGAGCAAGATTTCCTGGGTCAACAGGTTACATTTGGCCAAAATCGGA 2442
Query 2152 CTCCGGGAGGAGAACCAGCCAGGCTGGCTATGCCCGGATGAGGACAAGAAGAGCAAAGCCCCATTCTGGTGCCC 2225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CTCCGGGAGGAGAACCAGCCAGGCTGGCTATGCCCGGATGAGGACAAGAAGAGCAAAGCCCCATTCTGGTGCCC 2516
Query 2226 GATCCTGGCCTGCTGCATCCCTGCCTTCTCCTCCCGGGCACTCAGCCTGCAGCTTGGGGCCCTGGTCCACAGTC 2299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GATCCTGGCCTGCTGCATCCCTGCCTTCTCCTCCCGGGCACTCAGCCTGCAGCTTGGGGCCCTGGTCCACAGTC 2590
Query 2300 CTGTCAACTGTCCCCTGCTGGGTTTCTCAGCCGTCAGCACCTCCCTTCCACAGGGCTACCTCTGGGTCGGGGGC 2373
||||||||
Sbjct 2591 CTGTCAAC------------------------------------------------------------------ 2598
Query 2374 GGACAGGAAGGCGCAGGGGGCCAGGTGGAAATCTTTTCCTTGAACCGGCCCTCGCCCCGCACCGTCAAGTCCTT 2447
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2448 CCCACTGGCAGCCCCTGTGCTCTGCATGGAGTATATCCCGGAGCTGGAGGAGGAGGCGGAGAGCAGAGACGAGA 2521
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2522 GCCCGACAGTTGCTGACCCCTCGGCCACGGTGCATCCAACCATCTGCCTCGGGCTCCAGGATGGCAGCATCCTC 2595
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2596 CTCTACAGCAGTGTGGACACTGGCACCCAGTGCCTGGTGAGCTGCAGGAGCCCAGGTCTGCAGCCTGTGCTCTG 2669
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2670 CCTGCGACACAGCCCCTTCCACCTGCTCGCTGGCCTGCAGGATGGGACCCTTGCTGCTTACCCTCGGACCAGCG 2743
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2744 GAGGTGTCCTGTGGGACCTGGAGAGCCCTCCCGTGTGCCTGACTGTGGGGCCCGGGCCTGTCCGCACCCTGTTG 2817
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2818 AGCCTGGAGGATGCCGTGTGGGCCAGCTGTGGGCCCCGGGTCACTGTCCTGGAAGCCACCACCCTGCAGCCTCA 2891
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2892 GCAAAGCTTCGAGGCGCACCAGGACGAGGCAGTGAGCGTGACACACATGGTGAAGGCGGGCAGCGGCGTCTGGA 2965
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 2966 TGGCCTTCTCCTCCGGCACCTCCATCCGCCTCTTCCACACTGAGACCCTGGAGCATCTGCAAGAGATCAACATC 3039
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3040 GCCACCAGGACCACCTTCCTCCTGCCAGGCCAGAAGCACTTGTGTGTCACCAGCCTCCTGATCTGCCAGGGTCT 3113
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3114 GCTCTGGGTGGGCACTGACCAGGGTGTCATCGTCCTGCTGCCCGTGCCTCGGCTGGAAGGCATCCCCAAGATCA 3187
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3188 CAGGGAAAGGCATGGTCTCACTCAATGGGCACTGTGGGCCTGTGGCCTTCCTGGCTGTGGCTACCAGCATCCTG 3261
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3262 GCCCCTGACATCCTGCGGAGTGACCAGGAGGAGGCTGAGGGGCCCCGGGCTGAGGAGGACAAGCCAGACGGGCA 3335
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3336 GGCACACGAGCCCATGCCCGACAGCCACGTGGGCCGAGAGCTGACCCGCAAGAAGGGCATCCTCTTGCAGTACC 3409
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3410 GCCTGCGCTCCACCGCACACCTCCCGGGCCCGCTGCTCTCCATGCGGGAGCCGGCGCCTGCTGATGGCGCAGCT 3483
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3484 TTGGAGCACAGCGAGGAGGACGGCTCCATTTACGAGATGGCCGACGACCCCGACGTCTGGGTGCGCAGCCGGCC 3557
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3558 CTGCGCCCGCGACGCCCACCGCAAGGAGATTTGCTCTGTGGCCATCATCTCCGGCGGGCAGGGCTACCGCAACT 3631
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3632 TTGGCAGCGCTCTGGGCAGCAGTGGGAGGCAGGCCCCGTGTGGGGAGACGGACAGCACCCTCCTCATCTGGCAG 3705
Sbjct 2599 -------------------------------------------------------------------------- 2598
Query 3706 GTGCCCTTGATGCTA 3720
Sbjct 2599 --------------- 2598
