Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08516
Subject:
XM_011536923.1
Aligned Length:
3396
Identities:
2231
Gaps:
1164

Alignment

Query    1  ATGATTGCAACACCTTTGAAACATTCAAGAATTTACTTACCTCCAGAGGCATCTTCTCAAAGGAGAAATCTACC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CATGGATGCAATCTTTTTTGACAGCATTCCTTCAGGCACACTTACTCCTGTAAAAGATTTGGTGAAATATCAGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACTCCTCCTTAAAATTGAATGACCATAAAAAGAATCAGTTCCTAAAAATGACAACTTTTAACAATAAAAATATA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TTTCAATCAACTATGCTAACAGAGGCTACTACCTCTAACAGTTTTCTTGATATCAGTGCTATAAAGCCCAACAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GGATGGATTAAAAAATAAAGCAAACTATGAATCACCAGGAAAAATATTTCTAAGAATGAAAGAAAAAGTACTGC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GTGACAAGCAAGAACAGCCATCAAGAAACAGTAGTTTGTTGGAACCACAGAAAAGTGGAAATAATGAAACCTTC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  ACTCCTAACAGAGTTGAAAAAAAAAAATTGCAGCATACCTACCTATGTGAAGAAAAGGAAAACAACAAATCATT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CCAGTCAGATGACAGTTCACTAAGAGCCTCAGTCCAAGGAGTTCCTCTAGAATCATCAAATAATGATATTTTCC  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TCCCGGTCAAACAAAAGATTCAGTGCCAGCAGGAAAAGAAAGCACCACTGCACAATTTAACTTACGAACTTCCA  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  ACTCTGAACCAAGAACAGGAAAATTTTTTGGCTGTAGAAGCCCGAAACAAGACATTAACTAGAGCTCAGTTGGC  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TAAACAAATTTTTCACTCAAAGGAGAGTATAGTTGCAACCACTAAATCCAAAAAGGACACGTTTGTTTTAGAAA  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  GCGTTGATTCTGCTGATGAACAATTTCAAAATACTAATGCTGAGACTCTCAGTACTAATTGTATTCCTATTAAA  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  AATGGCAGCCTGTTAATGGTTTCTGATAGTGAGAGGACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAAGG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  AAATGGAAAAACAGTGCCTGGAGAGACAGGTCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAA  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  CACCAAGACTTCATATAACAATACCTCGGAGGTCAAAAAGAAATATTTCAAAGCTTTCTCCTCCAAGAATATTT  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  CAAACTGTTACAAATGGACTTAAAAAAAATCAGGTAGTTCAGCTACAGGAATGGATGATTAAAAGCATCAATAA  1184
                                                                  ||||||||||||||||||||
Sbjct    1  ------------------------------------------------------ATGATTAAAAGCATCAATAA  20

Query 1185  TAATACTGCTATATGTGTAGAAGGAAAATTGATAGACGTCACTAACATATATTGGCACAGTAATGTAATTATAG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   21  TAATACTGCTATATGTGTAGAAGGAAAATTGATAGACGTCACTAACATATATTGGCACAGTAATGTAATTATAG  94

Query 1259  AGCGGATTGAGCACAACAAACTTAGGACTATATCAGGCAACGTTTATATATTAAAAGGCATGATAGACCAAATT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   95  AGCGGATTGAGCACAACAAACTTAGGACTATATCAGGCAACGTTTATATATTAAAAGGCATGATAGACCAAATT  168

Query 1333  TCCATGAAAGAAGCAGGATATCCAAATTATCTCATAAGGAAATTTATGTTTGGATTTCCAGAAAATTGGAAAGA  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  TCCATGAAAGAAGCAGGATATCCAAATTATCTCATAAGGAAATTTATGTTTGGATTTCCAGAAAATTGGAAAGA  242

Query 1407  GCACATTGATAATTTTCTGGAACAATTAAGGGCTGGTGAAAAGAACAGGGAAAAGACCAAACAAAAACAGAAAA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GCACATTGATAATTTTCTGGAACAATTAAGGGCTGGTGAAAAGAACAGGGAAAAGACCAAACAAAAACAGAAAA  316

Query 1481  CTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAGAAAACCAAACAGATACTGCTCAA  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  CTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAGAAAACCAAACAGATACTGCTCAA  390

Query 1555  AGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGG  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  391  AGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGG  464

Query 1629  AGCTACAGAATTAAACATGTGCCACAGTAATTGCCAAAATAAACCAACATTAAGGTTCCCAGATGACCAAGTAA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  465  AGCTACAGAATTAAACATGTGCCACAGTAATTGCCAAAATAAACCAACATTAAGGTTCCCAGATGACCAAGTAA  538

Query 1703  ATAATACTATTCAAAATGGAGGAGGAGATGACTTATCTAATCAGGAATTAATTGGAAAAAAAGAATATAAAATG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  ATAATACTATTCAAAATGGAGGAGGAGATGACTTATCTAATCAGGAATTAATTGGAAAAAAAGAATATAAAATG  612

Query 1777  TCTTCAAAGAAACTAAAAATTGGTGAAAGAACAAATGAAAGGATAATAAAAAGTCAGAAGCAAGAGACAACTGA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  613  TCTTCAAAGAAACTAAAAATTGGTGAAAGAACAAATGAAAGGATAATAAAAAGTCAGAAGCAAGAGACAACTGA  686

Query 1851  AGAATTGGATGTATCCATTGATATTCTAACCTCAAGGGAACAGTTTTTCTCAGATGAAGAAAGAAAATACATGG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  687  AGAATTGGATGTATCCATTGATATTCTAACCTCAAGGGAACAGTTTTTCTCAGATGAAGAAAGAAAATACATGG  760

Query 1925  CCATCAATCAGAAGAAAGCTTATATTTTAGTAACACCACTTAAATCTAGAAAAGTGATAGAGCAAAGATGCATG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  761  CCATCAATCAGAAGAAAGCTTATATTTTAGTAACACCACTTAAATCTAGAAAAGTGATAGAGCAAAGATGCATG  834

Query 1999  AGGTATAATCTGTCCGCTGGCACCATCAAAGCAGTAACAGATTTTGTAATACCAGAGTGTCAAAAAAAAAGTCC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  835  AGGTATAATCTGTCCGCTGGCACCATCAAAGCAGTAACAGATTTTGTAATACCAGAGTGTCAAAAAAAAAGTCC  908

Query 2073  CATCAGCAAGTCCATGGGGACTTTAGAAAATACATTTGAAGGTCATAAAAGTAAAAACAAGGAAGATTGCGATG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  909  CATCAGCAAGTCCATGGGGACTTTAGAAAATACATTTGAAGGTCATAAAAGTAAAAACAAGGAAGATTGCGATG  982

Query 2147  AACGTGACTTACTTACTGTCAACCGGAAAATAAAAATATCTAACCTTGAAAAGGAACAAATGCTCACCTCTGAC  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  983  AACGTGACTTACTTACTGTCAACCGGAAAATAAAAATATCTAACCTTGAAAAGGAACAAATGCTCACCTCTGAC  1056

Query 2221  TTTAAGAAAAATACCAGACTATTACCAAAATTGAAGAAAATAGAAAATCAGGTAGCTATGTCATTTTATAAGCA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057  TTTAAGAAAAATACCAGACTATTACCAAAATTGAAGAAAATAGAAAATCAGGTAGCTATGTCATTTTATAAGCA  1130

Query 2295  TCAGTCCTCACCAGATTTGTCAAGTGAAGAAAGTGAAACAGAAAAGGAAATTAAAAGGAAAGCTGAAGTTAAGA  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131  TCAGTCCTCACCAGATTTGTCAAGTGAAGAAAGTGAAACAGAAAAGGAAATTAAAAGGAAAGCTGAAGTTAAGA  1204

Query 2369  AAACCAAAGCAGGAAACACCAAAGAAGCAGTGGTTCACCTGAGAAAGAGCACAAGAAACACAAGTAATATTCCA  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205  AAACCAAAGCAGGAAACACCAAAGAAGCAGTGGTTCACCTGAGAAAGAGCACAAGAAACACAAGTAATATTCCA  1278

Query 2443  GTGATTTTGGAACCTGAAACTGAAGAAAGTGAAAATGAATTTTATATCAAACAAAAGAAAGCTAGACCTTCCGT  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279  GTGATTTTGGAACCTGAAACTGAAGAAAGTGAAAATGAATTTTATATCAAACAAAAGAAAGCTAGACCTTCCGT  1352

Query 2517  CAAAGAAACTCTTCAGAAGTCTGGTGTTAGGAAAGAGTTTCCAATTACTGAGGCAGTAGGATCTGATAAGACAA  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353  CAAAGAAACTCTTCAGAAGTCTGGTGTTAGGAAAGAGTTTCCAATTACTGAGGCAGTAGGATCTGATAAGACAA  1426

Query 2591  ATAGGCATCCCTTAGAATGCTTACCTGGTTTAATTCAGGATAAGGAATGGAATGAGAAGGAGTTACAGAAACTT  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427  ATAGGCATCCCTTAGAATGCTTACCTGGTTTAATTCAGGATAAGGAATGGAATGAGAAGGAGTTACAGAAACTT  1500

Query 2665  CATTGTGCTTTTGCATCTCTTCCAAAGCACAAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCTGTAGGTTCTCG  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501  CATTGTGCTTTTGCATCTCTTCCAAAGCACAAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCTGTAGGTTCTCG  1574

Query 2739  ATCTCCTGAAGAATGCCAGAAGAAATACATGGAAAATCCCAGAGGAAAAGGATCCCAGAAACATGTCACTAAGA  2812
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575  ATCTCCTGAAGAATGCCAGAGGAAATACATGGAAAATCCCAGAGGAAAAGGATCCCAGAAACATGTCACTAAGA  1648

Query 2813  AGAAGCCAGCCAATTCCAAAGGCCAAAATGGCAAGAGAGGTGATGCTGATCAGAAACAAACTATTAAGATAACT  2886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649  AGAAGCCAGCCAATTCCAAAGGCCAAAATGGCAAGAGAGGTGATGCTGATCAGAAACAAACTATTAAGATAACT  1722

Query 2887  GCCAAAGTGGGAACTCTTAAAAGGAAGCAACAGATGAGGGAATTTCTGGAACAGTTGCCAAAAGATGACCATGA  2960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723  GCCAAAGTGGGAACTCTTAAAAGGAAGCAACAGATGAGGGAATTTCTGGAACAGTTGCCAAAAGATGACCATGA  1796

Query 2961  TGATTTTTTCAGTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGATG  3034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797  TGATTTTTTCAGTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGATG  1870

Query 3035  ATGATATTCTGCCAAATATGGACAAAAATCCAACAACTCCATCATCAGTTATCTTTCCATTGGTAAAAACTCCT  3108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871  ATGATATTCTGCCAAATATGGACAAAAATCCAACAACTCCATCATCAGTTATCTTTCCATTGGTAAAAACTCCT  1944

Query 3109  CAATGTCAGCATGTCAGTCCTGGCATGCTAGGTTCTATAAATAGGAATGACTGTGATAAATATGTTTTTCGTAT  3182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945  CAATGTCAGCATGTCAGTCCTGGCATGCTAGGTTCTATAAATAGGAATGACTGTGATAAATATGTTTTTCGTAT  2018

Query 3183  GCAAAAATATCATAAAAGTAATGGTGGTATTGTCTGGGGCAACATCAAGAAAAAATTAGTTGAAACTGATTTCT  3256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019  GCAAAAATATCATAAAAGTAATGGTGGTATTGTCTGGGGCAACATCAAGAAAAAATTAGTTGAAACTGATTTCT  2092

Query 3257  CAACTCCAACACCAAGAAGGAAAACCCCATTTAACACAGACTTAGGAGAAAACTCTGGTATTGGAAAACTTTTC  3330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093  CAACTCCAACACCAAGAAGGAAAACCCCATTTAACACAGACTTAGGAGAAAACTCTGGTATTGGAAAACTTTTC  2166

Query 3331  ACTAATGCTGTGGAATCTTTAGATGAAGAAGAGAAAGATTATTATTTTTCGAACTCTGATTCTGCA  3396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167  ACTAATGCTGTGGAATCTTTAGATGAAGAAGAGAAAGATTATTATTTTTCGAACTCTGATTCTGCA  2232

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