Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08597
Subject:
NM_001301832.1
Aligned Length:
1425
Identities:
916
Gaps:
387

Alignment

Query    1  ATGCAGAAATCTACAAATTCTGATACTTCCGTGGAAACACTGAATTCTACCCGCCAAGGCACAGGAGCTGTGCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AATGAGAATCAAAAATGCCAACAGCCACCATGACAGGCTCAGCCAAAGTAAATCCATGATCCTCACCGATGTCG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GGAAGGTCACTGAACCTATATCCAGACACAGAAGGAATCATTCACAGCATATCTTGAAAGATGTCATTCCTCCA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TTGGAACAACTGATGGTTGAAAAAGAAGGTTATCTGCAAAAAGCTAAAATTGCAGATGGAGGAAAGAAACTAAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCGAAGAATTGAATTTTACAAAGAATCCAAGCAACAGG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CTCTGTCCAATATGAAAACTGGGCACAAACCAGAAAGTGTGGATTTGTGTGGAGCACACATTGAATGGGCCAAG  444
                       ||||||||..|||||||....||||||||||||||||||||.|||||.||.|||||||||||.
Sbjct    1  -----------ATGAAAACCAGGCACAACGTGGAAAGTGTGGATTTGTGTGGTGCACATATAGAATGGGCCAAA  63

Query  445  GAAAAATCGAGCAGAAAGAATGTCTTTCAGATCACAACAGTATCAGGAAATGAGTTCCTTCTACAGTCAGATAT  518
            ||||||||.||||||||||.|||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct   64  GAAAAATCAAGCAGAAAGAGTGTCTTTCAGATCACAACAGTGTCAGGAAATGAGTTCCTTCTACAGTCAGATAT  137

Query  519  TGACTTCATCATATTGGATTGGTTCCACGCTATCAAAAATGCAATTGACAGATTGCCAAAGGATTCAAGTTGTC  592
            |||||||.|||||||||||||||||||.|||||||||||||||||||||||||||||||||.||.||||||||.
Sbjct  138  TGACTTCCTCATATTGGATTGGTTCCAAGCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTGTG  211

Query  593  CATCAAGAAACCTGGAATTATTCAAAATCCAAAGATCCTCTAGCACTGAATTGCTAAGTCACTACGACAGTGAT  666
            ..||      ||||||.||.|||||..|.||.||||||||.||..|||||.|||..|||||||.|.|||..|||
Sbjct  212  GGTC------CCTGGAGTTGTTCAATTTGCAGAGATCCTCAAGTTCTGAACTGCCGAGTCACTGCCACATCGAT  279

Query  667  ATAAAAGAACAGAAACCAGAGCACAGAAAATCTTTAATGTTCAGACTGCATCACAGTGCTTCCGATACAAGCGA  740
            |.||||||||||||||||||.|||||.||.||.||.|||||..|||||||.|||||||||||.||||||||.||
Sbjct  280  AGAAAAGAACAGAAACCAGAACACAGGAAGTCCTTCATGTTTCGACTGCACCACAGTGCTTCTGATACAAGTGA  353

Query  741  CAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTCTGCAAGAAAAAG  814
            |||.|||||.||.||.||||||.|.||||||||.||..||.||||||||||.|||||||||.||||.|||||.|
Sbjct  354  CAAGAATCGCGTGAAGAGCAGACTGAAGAAGTTCATCTCCAGAAGACCTTCTCTGAAAACTTTGCAGGAAAAGG  427

Query  815  GACTTATTAAAGATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCCACAGTTCCGTGG  888
            ||||.||||||||||||||||||||||||||||||||||.||||||||||||.|||.|||||||||||||.|||
Sbjct  428  GACTCATTAAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAGAACATTCCACAGTTCCATGG  501

Query  889  TTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTGATGGAATATATCGAGTTAGTGGCAA  962
            |||||||||||||||||||||||||||||.||||||||.|||||.|||||||||||.|||||||||||||||||
Sbjct  502  TTTGTAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGACGTTGATGGAATTTATCGAGTTAGTGGCAA  575

Query  963  TCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACGACAGCCAGTGGG  1036
            |||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  576  TCTTGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGATGACAGCCAGTGGG  649

Query 1037  AGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTCTTCCCTTACAGT  1110
            |||||||||||||.||||||||||||||||||||||||||||||||||||.||||.||||||||||||||||||
Sbjct  650  AGGACATCCACGTCGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGTCTGAACCGCTCTTCCCTTACAGT  723

Query 1111  TTCTTTGAGCAGTTTGTGGAAGCGATCAAAAAGCAAGACAACAACACAAGAATTGAAGCTGTAAAATCTCTTGT  1184
            ||||||||||.|||||||||.|||||||||||.|||||||.|||...||.|||||||.||.|.|..|||||.||
Sbjct  724  TTCTTTGAGCGGTTTGTGGAGGCGATCAAAAAACAAGACAGCAATGAAAAAATTGAAACTATGAGGTCTCTGGT  797

Query 1185  ACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCCCTTTGGACATCTAACTAAGATAGTGGCCAAAG  1258
            |.||...||||||||.|||||||.|||.|||||||||.|||.|||..||||||||||.||||||||||||||||
Sbjct  798  AAAACGTCTCCCTCCACCAAATCATGATACCATGAAAATCCTCTTCAGACATCTAACCAAGATAGTGGCCAAAG  871

Query 1259  CCTCCAAGAACCTCATGTCCACGCAAAGCTTGGGGATTGTATTTGGACCTACCCTTCTGCGAGCTGAAAATGAA  1332
            |||||.||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||||.||||||||.
Sbjct  872  CCTCCCAGAATCTCATGTCCACCCAAAGCTTGGGGATTGTGTTTGGACCCACCCTTCTGCGAGCGGAAAATGAG  945

Query 1333  ACAGGAAACATGGCGATCCACATGGTCTACCAGAACCAGATAGCTGAGCTCATGCTGAGTGAGTACAGTAAGAT  1406
            .||||.||..|.|||.||||||||||.|||||.|||||||||||.|||.|||||||||.|||||||..||||||
Sbjct  946  TCAGGGAATGTAGCGGTCCACATGGTATACCAAAACCAGATAGCAGAGTTCATGCTGACTGAGTACGATAAGAT  1019

Query 1407  CTTCGGCTCAGAGGAAGAC  1425
            ||||.||||||||||||||
Sbjct 1020  CTTCAGCTCAGAGGAAGAC  1038