Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08597
Subject:
XR_001738850.1
Aligned Length:
2730
Identities:
1424
Gaps:
1305

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTTTTGTTGAAAGAGTCATTAACAGTTAGGAGTTGATGGCAGTTTCAATAACAGGTCATTGCCGAGAAAAGGA  74

Query    1  ------------ATGCAGAAATCTACAAATTCTGATACTTCCGTGGAAACACTGAATTCTACCCGCCAAGGCAC  62
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TAGCACTATAATATGCAGAAATCTACAAATTCTGATACTTCCGTGGAAACACTGAATTCTACCCGCCAAGGCAC  148

Query   63  AGGAGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCATGACAGGCTCAGCCAAAGTAAATCCATGATCC  136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGGAGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCATGACAGGCTCAGCCAAAGTAAATCCATGATCC  222

Query  137  TCACCGATGTCGGGAAGGTCACTGAACCTATATCCAGACACAGAAGGAATCATTCACAGCATATCTTGAAAGAT  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCACCGATGTCGGGAAGGTCACTGAACCTATATCCAGACACAGAAGGAATCATTCACAGCATATCTTGAAAGAT  296

Query  211  GTCATTCCTCCATTGGAACAACTGATGGTTGAAAAAGAAGGTTATCTGCAAAAAGCTAAAATTGCAGATGGAGG  284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTCATTCCTCCATTGGAACAACTGATGGTTGAAAAAGAAGGTTATCTGCAAAAAGCTAAAATTGCAGATGGAGG  370

Query  285  AAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCGAAGAATTGAATTTTACAAAGAAT  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTTTCTAGTCGAAGAATTGAATTTTACAAAGAAT  444

Query  359  CCAAGCAACAGGCTCTGTCCAATATGAAAACTGGGCACAAACCAGAAAGTGTGGATTTGTGTGGAGCACACATT  432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCAAGCAACAGGCTCTGTCCAATATGAAAACTGGGCACAAACCAGAAAGTGTGGATTTGTGTGGAGCACACATT  518

Query  433  GAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTCAGATCACAACAGTATCAGGAAATGAGTTCCTTCT  506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAATGGGCCAAGGAAAAATCGAGCAGAAAGAATGTCTTTCAGATCACAACAGTATCAGGAAATGAGTTCCTTCT  592

Query  507  ACAGTCAGATATTGACTTCATCATATTGGATTGGTTCCACGCTATCAAAAATGCAATTGACAGATTGCCAAAGG  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACAGTCAGATATTGACTTCATCATATTGGATTGGTTCCACGCTATCAAAAATGCAATTGACAGATTGCCAAAGG  666

Query  581  ATTCAAGTTGTCCATCAAGAAACCTGGAATTATTCAAAATCCAAAGATCCTCTAGCACTGAATTGCTAAGTCAC  654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ATTCAAGTTGTCCATCAAGAAACCTGGAATTATTCAAAATCCAAAGATCCTCTAGCACTGAATTGCTAAGTCAC  740

Query  655  TACGACAGTGATATAAAAGAACAGAAACCAGAGCACAGAAAATCTTTAATGTTCAGACTGCATCACAGTGCTTC  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TACGACAGTGATATAAAAGAACAGAAACCAGAGCACAGAAAATCTTTAATGTTCAGACTGCATCACAGTGCTTC  814

Query  729  CGATACAAGCGACAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTC  802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CGATACAAGCGACAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTC  888

Query  803  TGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCC  876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCC  962

Query  877  ACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTGATGGAATATATCG  950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTGATGGAATATATCG  1036

Query  951  AGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACG  1024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACG  1110

Query 1025  ACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTC  1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTC  1184

Query 1099  TTCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCAAAAAGCAAGACAACAACACAAGAATTGAAGCTGT  1172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCAAAAAGCAAGACAACAACACAAGAATTGAAGCTGT  1258

Query 1173  AAAATCTCTTGTACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCCCTTTGGACATCTAACTAA--  1244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||  
Sbjct 1259  AAAATCTCTTGTACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCTCTTTGGACATCTAACTAAGA  1332

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1333  TCCAGACACACCATGAAAGCGGTTTCAAGTTACAAGTAAATACTGGAGTGCTTATCTCAGTAACTTTAACTGGA  1406

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1407  CAAAGTCATAAAACAAATGGAAAAGTATACCCTTTAATGCTATGCAATACCTTGTCTTAAAGTTCTTGAGAAAT  1480

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1481  ATCCGTTACTCTGTCCCAATTATTCCCTTTTTTTTCAACTGAAGAAATAGCTATAAAATAAAGAAACTAAGAGT  1554

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1555  CAGCTAAATCCTCCTTCAAATAAAATAAATAAAACACACAGAAGAGAATCTATCTAGTTAAAAACCTTCAAAGG  1628

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1629  ATGACGATCGTCCATGTCCAGGCCACATAATCCCAGTTTTAACAATTAATGCCTGATCCTGTTTTTTACATCCC  1702

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1703  AGTTAATTTCCTAATCTTGTCAGAACTTTCATTTAGTTCAATAGAGATGGAAATAGATGTTTTAAATTAAGATT  1776

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1777  TAAGATCAGATTATTATATCACTTCACAGTATTCACATTTTAAGATTGATTATTATACATGGGAAGAAGTGTTG  1850

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1851  TTTGCTAGCCACCAACCTTTCTTGGGTGGTATGACTATATTTCACCCTGTACCAATTTATAAACTGGGTTTAAT  1924

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1925  TATGCACGAGTGTGTGCACACAATTATATCTTGTTAAGCATTTTTTTGCTAAGTTTTTGATAAACAGCCAATCG  1998

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 1999  TGGCGTGTCATCAAAGCCTGAGAAGACTAAATAAGAAGATTGTTTAACAGGAATTTAAATATATTCGTGTTTGA  2072

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 2073  AAGAATCATTAGAATGTTTTCCTTAGTCTTAATGCATTTGGTAGTTCTTCAGAAAATCTATCGTCAACCCTTGT  2146

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 2147  ATGTAGTGTTTATTCCAAATTGTTGCAAATATATATATTTTGAAGTTTGTTTAGTGAGGGTCAGGGAATGTAAT  2220

Query 1245  --------------------------------------------------------------------------  1244
                                                                                      
Sbjct 2221  GAAGTGCCAAAAATTCCACTTGACCTACGTACTCTACAGTCAACAGAAAAGCACTCCATTTTTGCAGAGCTCTG  2294

Query 1245  ------------------------------------------------------------------------GA  1246
                                                                                    ||
Sbjct 2295  AGTTAAATGCACTCCTCAAAGCAGATCAGCTATCAACTGGGAAAGCTTAATGCGGCACAGTTGGACTAGAAGGA  2368

Query 1247  TAGTGGCCAAAGCCTCCAAGAACCTCATGTCCACGCAAAGCTTGGGGATTGTATTTGGACCTACCCTTCTGCGA  1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TAGTGGCCAAAGCCTCCAAGAACCTCATGTCCACGCAAAGCTTGGGGATTGTATTTGGACCTACCCTTCTGCGA  2442

Query 1321  GCTGAAAATGAAACAGGAAACATGGCGATCCACATGGTCTACCAGAACCAGATAGCTGAGCTCATGCTGAGTGA  1394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GCTGAAAATGAAACAGGAAACATGGCGATCCACATGGTCTACCAGAACCAGATAGCTGAGCTCATGCTGAGTGA  2516

Query 1395  GTACAGTAAGATCTTCGGCTCAGAGGAAGAC-------------------------------------------  1425
            |||||||||||||||||||||||||||||||                                           
Sbjct 2517  GTACAGTAAGATCTTCGGCTCAGAGGAAGACTGACAGACAAGACAAGCTACTGAATACGTTCACATCTGTCTTG  2590

Query 1426  --------------------------------------------------------------------------  1425
                                                                                      
Sbjct 2591  ATGCCTAATATTTTTACATTTCTGTAAACATATTTCTGAAATATTTTTTGCCTTTCAAGCGACAGATGCCTCAT  2664

Query 1426  ------------------------------------------------------------------  1425
                                                                              
Sbjct 2665  TTTGTGAAAACTTAATGATGATTTTGTGTTTAAGTTCCAAACATTTGAATAAAATAATTGACAATA  2730

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