Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08733
- Subject:
- XM_011239943.2
- Aligned Length:
- 2816
- Identities:
- 1402
- Gaps:
- 1192
Alignment
Query 1 ATGAC-GGATCCTTTCTGCGTT---GGAGGCCGTCGGCTCCCGGGGTCCAGCAAGAGTGGTCCCGGGAAGGATG 70
||||| |.||||||| ||.||| ||||||||||||||.|..||.||||||||.|||||.||.||.||||..|
Sbjct 1 ATGACTGAATCCTTT-TGTGTTGGAGGAGGCCGTCGGCTTCAAGGATCCAGCAAAAGTGGACCTGGAAAGGGAG 73
Query 71 GCAGCCGAAAGGAGGTCCGACTTCCAATGCTGCATGACCCACCGAAGATGGGGATGCCGGTGGTCCGTGGTGGA 144
|||||||.|||||||.||.||||||..||.||||.||||||||.|||.|.||||||||.|||||||...|||||
Sbjct 74 GCAGCCGGAAGGAGGCCCAACTTCCCTTGTTGCAGGACCCACCAAAGCTAGGGATGCCAGTGGTCCACAGTGGA 147
Query 145 CAGACAGTGCCCGGCCAGGCCCCTCTCTGCTTTGACCCGGGAAGTCCAGCCAGTGACAAGACAGAAGGGAAGAA 218
||.||||||||..||||||||||.||||||||||||||.||||...||||||||||||||||||||||||||||
Sbjct 148 CATACAGTGCCTAGCCAGGCCCCACTCTGCTTTGACCCTGGAAACTCAGCCAGTGACAAGACAGAAGGGAAGAA 221
Query 219 AAAGGGGCGGCCAAAAGCCGAGAACCAGGCCCTCCGAGACATTCCTCTCTCCCTGATGAACGACTGGAAGGATG 292
|||.|||.||||.||||||||||||||.||.||||||||.|||||||||||.|||||||||.|.|||||.||||
Sbjct 222 AAAAGGGAGGCCGAAAGCCGAGAACCAAGCTCTCCGAGATATTCCTCTCTCTCTGATGAACCAGTGGAAAGATG 295
Query 293 AGTTCAAGGCACACTCGAGGGTGAAGTGTCCAAACTCAGGGTGCTGGCTGGAGTTCCCCAGCATCTACGGGCTC 366
|.||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||
Sbjct 296 AATTCAAGGCACACTCAAGGGTGAAGTGTCCAAACTCAGGGTGCTGGCTAGAGTTCCCCAGCATCTATGGGCTC 369
Query 367 AAGTACCATTACCAGCGGTGCCAAGG------------------------------------------------ 392
||||||||.||.||||||||||||||
Sbjct 370 AAGTACCACTATCAGCGGTGCCAAGGGGTAAGGGGCTGTGGGCCAGGGAAGAGGAGGCCTGGGGGTGCATCTGG 443
Query 393 ---------------------------------------------GGGTGCCATCTCAGATCGCCTGGCCTTCC 421
||||||.|||||||||.|.||||||||||
Sbjct 444 GCAGAGGCCCCCGGGGCCCCATCCCACACCTGCCCTCCCTGCCCAGGGTGCTATCTCAGATAGGCTGGCCTTCC 517
Query 422 CCTGCCCCTTCTGCGAGGCCGCATTCACCTCTAAGACCCAGCTGGAGAAACACCGGATCTGGAACCACATGGAC 495
|.||||||||||||||||||||||||||.||.|||||||||||||||||.||||||||.|||||.|||||||||
Sbjct 518 CTTGCCCCTTCTGCGAGGCCGCATTCACTTCCAAGACCCAGCTGGAGAAGCACCGGATATGGAATCACATGGAC 591
Query 496 CGACCCCTGCCTGCCTCCAAGCCTGGGCCCA-TCAGCAGGCCGGTCACCATCAGCCGGCCTGTTGGGGTCAGCA 568
|..|||||.||||||.|||||||| |||||| |||||.||||||||||||||||||||||||||||||||||||
Sbjct 592 CACCCCCTACCTGCCCCCAAGCCT-GGCCCAGTCAGCCGGCCGGTCACCATCAGCCGGCCTGTTGGGGTCAGCA 664
Query 569 AGCCCATCGGAGTGAGCAAACCTGTCACTATTGGCAAACCTGTGGGTGTCAGCAAACCCATTGGCATCAGCAAG 642
|||||||||||||||||||||||||.|||.||||||||||.||||||||||||||.||||||||||||||.|||
Sbjct 665 AGCCCATCGGAGTGAGCAAACCTGTTACTGTTGGCAAACCAGTGGGTGTCAGCAAGCCCATTGGCATCAGTAAG 738
Query 643 CCAGTCTCGGTCGGCAGACCAATGCCAGTCACCAAGGCCATCCCGGTCACTAGGCCCGTGCCAGTCACCAAACC 716
|||| ||.|.||||.||||||..|.||||||||||||||
Sbjct 739 CCAG------------------------------------TCACAGTCAGTAGGCCTATACCAGTCACCAAACC 776
Query 717 TGTCACAGTCAGCAGGCCCATGCCCGTCACCAAGGCC-ATGCCGGTCACCAAACCCATCACAGTCACCAAGTCT 789
||||||||||||.||||||||||..||| .|.||||| .||||.||||||||.||||||.||.|.|||||..||
Sbjct 777 TGTCACAGTCAGTAGGCCCATGCAAGTC-TCTAGGCCTGTGCCAGTCACCAAGCCCATCCCAATTACCAAACCT 849
Query 790 GTGCCGGTCACCAAACCCGTACCTGTCACCAAACCCATTACGGTCACAAAGCTTGTGACAGTTACGAAACCCGT 863
|||||..|||||||||...|.||.||.||| |||||||||||||||.|.|||||.||
Sbjct 850 GTGCCACTCACCAAACATATGCCAGTTACC------------------AAGCTTGTGACAGTTTCAAAACCTGT 905
Query 864 GCCGGTCACCAAGCCAGTGACAGTCAGCAGGCCCATTGTGGTCAGCAAGCCGGTGACAGTCAGCAGGCCCATTG 937
|||..|||||||||||||..|||||||||||||||||||||||||||||||.|||.|.||||||||||||||.|
Sbjct 906 GCCACTCACCAAGCCAGTACCAGTCAGCAGGCCCATTGTGGTCAGCAAGCCTGTGCCGGTCAGCAGGCCCATCG 979
Query 938 CTATCAGCAGACACACACCGCCCTGCAAAATGGTGCTGCTGACCAGGTCGGAGAACAAAGCACCTCGTGCCACA 1011
|.|||||||||||||.|||.|||||||||||||||.|||||.|||..||.|||||||||.|||.||||||.|||
Sbjct 980 CCATCAGCAGACACATACCACCCTGCAAAATGGTGTTGCTGTCCAAATCTGAGAACAAAACACTTCGTGCTACA 1053
Query 1012 GGGAGGAACAGTGGTAAGAAAAGGGCTGCGGACAGCCTGGACACCTGCCCAATTCCACCCAAGCAGGCCAGGCC 1085
||.|.||||||...|||||||||||||||.|||||..|||||||||||||.||.|...||||||||||.|||||
Sbjct 1054 GGCAAGAACAGCAATAAGAAAAGGGCTGCAGACAGTTTGGACACCTGCCCCATCCTGTCCAAGCAGGCAAGGCC 1127
Query 1086 AGAGAATGGGGAGTACGGCCCCTCCTCCATGGGCCAGAGCTCGGCCTTCCAGCTGAGTGCAGACACCAGCAGTG 1159
|||||||||.|..||||||||.|||..|||||.||||||...|.||||||..||||||.||||..|.|||
Sbjct 1128 AGAGAATGGAGCATACGGCCCATCCAGCATGGACCAGAGTGTGACCTTCCCACTGAGTACAGATCCTAGC---- 1197
Query 1160 GCTCCTTGTCGCCAGGCAGCAGGCCGTCAGG--GGGCATGGAGGCACTGAAGGCTGCAGGCCCTGCGTCCCCGC 1231
||||||||||| |..| |||||..|||||||||..|.||..||||||.|.|||||.||
Sbjct 1198 --------------GGCAGCAGGCC--CCTGATGGGCAAAGAGGCACTGCGGCCTATAGGCCCAGTGTCCCAGC 1255
Query 1232 CTGAGGAGGACCCGGAGCGCACAAAGCACAGAAGGAAACAGAAAACACCCAAAAAGTTTACAGGGGAGCAGCCA 1305
|.|||||.|||||.|||||||||||||||||||||||||||||||||||.||.||.||.|||||||||||.|||
Sbjct 1256 CCGAGGAAGACCCTGAGCGCACAAAGCACAGAAGGAAACAGAAAACACCGAAGAAATTCACAGGGGAGCAACCA 1329
Query 1306 TCCATCTCAGGGACCTTTGGGCTCAAAGGCCTGGTCAAAGCTGAGGACAAGGCCCGAGTTCACCGCTCCAAGAA 1379
||.|||||||||||||||||||||||||||||||.|||||||||.||||||||.||||||||.|||||||||||
Sbjct 1330 TCTATCTCAGGGACCTTTGGGCTCAAAGGCCTGGCCAAAGCTGAAGACAAGGCTCGAGTTCATCGCTCCAAGAA 1403
Query 1380 GCAGGAGGGGCCAGGCCCTGAGGACGCCCGGAAGAAGGTGCCAGCTGCCCCAATCACTGTCAGCAAGGAGGCAC 1453
|||.|||||..|||||.|||||||.|..|||||||||||||..||..||||..|||||||||||||||||||||
Sbjct 1404 GCAAGAGGGATCAGGCTCTGAGGAAGTGCGGAAGAAGGTGCTGGCCACCCCTGTCACTGTCAGCAAGGAGGCAC 1477
Query 1454 CGGCCCCTGTGGCCCACCCAGCTCCA---------------------------------------GGTGGCCCT 1488
|..|.||||||||.||||||||.||| ||||||||.
Sbjct 1478 CAACTCCTGTGGCTCACCCAGCCCCAGGTGGGGGCTGCCTGGCAGGACCCAGGACAGGTCTCCATGGTGGCCCG 1551
Query 1489 GAAGAGCAGTGGCAGAGGGCCATCCATGAGCGCGGGGAAGCCGTCTGCCCCACCTGCAACGTGGTCACCCGGAA 1562
||.||||||||||||.|.|||||||||||.||.|||||.||.|||||||||||||||||||||||.||||||||
Sbjct 1552 GAGGAGCAGTGGCAGCGAGCCATCCATGAACGGGGGGAGGCTGTCTGCCCCACCTGCAACGTGGTTACCCGGAA 1625
Query 1563 GACTCTCGTGGGGCTCAAGAAGCACATGGAGGTGTGTCAGAAGCTTCAGGATGCACTCAAGTGCCAGCACTGCC 1636
|||.||||||||.|||||.|||||||||||.||.|||||.|||.|.|||||.||||||||.||.||||||||||
Sbjct 1626 GACCCTCGTGGGACTCAAAAAGCACATGGAAGTATGTCACAAGTTGCAGGAAGCACTCAAATGTCAGCACTGCC 1699
Query 1637 GGAAGCAGTTCAAGTCCAAAGCCGGCCTCAACTACCACACTATGGCCGAGCACAGTGCCAAGCCCTCTGACGCC 1710
|.||.||.|||||||||||.||.|||||||||||||||||.|||||.||.||||||||||||..|
Sbjct 1700 GAAAACAATTCAAGTCCAAGGCTGGCCTCAACTACCACACCATGGCTGAACACAGTGCCAAGGTC--------- 1764
Query 1711 GAGGCCTCCGAAGGGGGCGAGCAGGAGGAGCGCGAGAGGCTGCGCAAGGTGCTGAAGCAGATGGGACGGCTGCG 1784
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 1785 CTGCCCCCAGGAGGGTTGCGGGGCTGCCTTCTCCAGCCTCATGGGCTACCAGTACCACCAGCGGCGCTGCGGGA 1858
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 1859 AGCCGCCCTGCGAGGTGGACAGCCCCTCCTTCCCCTGCACCCACTGTGGCAAGACGTACCGATCCAAGGCTGGC 1932
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 1933 CACGACTACCACGTGCGCTCGGAGCACACGGCCCCCCCCCCTGAGGAGCCCACAGACAAGTCCCCTGAGGCTGA 2006
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2007 GGACCCGCTGGGTGTGGAGCGGACCCCAAGCGGGCGTGTCCGCCGCACGTCGGCCCAGGTGGCGGTGTTCCACC 2080
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2081 TGCAGGAGATAGCGGAGGACGAGCTGGCCCGCGACTGGACCAAGCGGCGCATGAAGGATGACCTTGTGCCCGAG 2154
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2155 ACCGCACGGCTCAACTACACTCGACCAGGGCTCCCCACGCTGAACCCCCAGCTGCTAGAGGCATGGAAGAATGA 2228
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2229 AGTGAAGGAGAAAGGCCACGTCAACTGTCCCAACGACTGCTGTGAAGCCATCTACTCCAGCGTGTCCGGACTCA 2302
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2303 AGGCTCATCTCGCCAGCTGCAGTAAGGGGGCCCACCTGGCAGGGAAGTACCGCTGTCTGCTGTGTCCGAAGGAG 2376
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2377 TTCAGTTCTGAGAGTGGCGTCAAATACCACATCCTGAAGACCCACGCAGAGAACTGGTTCCGAACATCAGCAGA 2450
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2451 CCCACCTCCCAAACACAGGAGCCAGGACTCATTGGTGCCCAAGAAGGAAAAGAAGAAAAATCTGGCAGGTGGAA 2524
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2525 AGAAGCGGGGCCGAAAGCCCAAGGAGCGGACCCCAGAGGAGCCTGTGGCCAAGCTGCCCCCGCGCCGGGACGAC 2598
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2599 TGGCCTCCAGGATGCAGAGACAAGGGGGCCCGGGGCTCCACCGGCCGGAAGGTGGGAGTCAGCAAGGCGCCTGA 2672
Sbjct 1765 -------------------------------------------------------------------------- 1764
Query 2673 AAAG 2676
Sbjct 1765 ---- 1764
