Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08733
- Subject:
- XR_375397.3
- Aligned Length:
- 3597
- Identities:
- 1659
- Gaps:
- 1686
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAGTTGATTCAATAGCCAGTGACCGCAATAAGGCCTATCGGTCTTCGTGTCTAGATTAAGGTGGCCTAAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACAGATAGAGGCTGAGGTGCCCCCTGACAGCCTACAGATGTCCTATAACCCTTCATAGGATCTACTTCAGCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCAACCACACCGGTTGCTTAATCCGTCAGGCAGGATTTGCGGTAGTGTCCAGAGTTCCTGACGTGCCTCAGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TACTGGACTGTCCACAAAGCGACTCTTGCCCAAGGCACGCGTGACCGATCGCTCGGCCCTGGAGGCCAGGACCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGGGCCACGGACCGCACTGCCCGGAGCGGCGGAACGGCCCCACCGGCCCCTTCCCCGCAGCGGCGGCCGCGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAATACCGCGAGAGTTCGCCCCCCTCCCCCCCGCAGTAAAACTGTCAAAGGTAGGAGGGGCGGGAGCGCGCATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGCGCAGCACGGCGCGGAGTGTGCGCCGCCCGGACCCCGCGCCCCGCGCCCCGCGCCCCGGCCCGGCTCTGGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCGGCCTGGCCCGGCCGCACCCCTTGGGCGCTGCAGGTAAGCGCCGGCCCTGCCCGCTTTACCGCGGCCCCGGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCACACGCGCCCCGCACCAGCCCTGTGCCCAGCCCGCCTCCCCGCCGCGCCCGGACCCGCGCCGCGCCCCGCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCCCGCGTCGGCGCCGTCCTCCCGCCTCCTCCTCCAGAAAAAGTCGCCATTTTGGTTCACTGCCTTCGCCCCCC 740
Query 1 --------------------------------------------------------ATGAC-GGATCCTTTCTG 17
||||| |.||||||| ||
Sbjct 741 CGCGGTCGGCGCTTCCGGGCCAGGCTGCAGCCCGCGTCCGGCCTCAGGTGACAGAGATGACTGAATCCTTT-TG 813
Query 18 CGTT---GGAGGCCGTCGGCTCCCGGGGTCCAGCAAGAGTGGTCCCGGGAAGGATGGCAGCCGAAAGGAGGTCC 88
.||| ||||||||||||||.|..||.||||||||.|||||.||.||.||||..||||||||.|||||||.||
Sbjct 814 TGTTGGAGGAGGCCGTCGGCTTCAAGGATCCAGCAAAAGTGGACCTGGAAAGGGAGGCAGCCGGAAGGAGGCCC 887
Query 89 GACTTCCAATGCTGCATGACCCACCGAAGATGGGGATGCCGGTGGTCCGTGGTGGACAGACAGTGCCCGGCCAG 162
.||||||..||.||||.||||||||.|||.|.||||||||.|||||||...|||||||.||||||||..|||||
Sbjct 888 AACTTCCCTTGTTGCAGGACCCACCAAAGCTAGGGATGCCAGTGGTCCACAGTGGACATACAGTGCCTAGCCAG 961
Query 163 GCCCCTCTCTGCTTTGACCCGGGAAGTCCAGCCAGTGACAAGACAGAAGGGAAGAAAAAGGGGCGGCCAAAAGC 236
|||||.||||||||||||||.||||...|||||||||||||||||||||||||||||||.|||.||||.|||||
Sbjct 962 GCCCCACTCTGCTTTGACCCTGGAAACTCAGCCAGTGACAAGACAGAAGGGAAGAAAAAAGGGAGGCCGAAAGC 1035
Query 237 CGAGAACCAGGCCCTCCGAGACATTCCTCTCTCCCTGATGAACGACTGGAAGGATGAGTTCAAGGCACACTCGA 310
|||||||||.||.||||||||.|||||||||||.|||||||||.|.|||||.|||||.||||||||||||||.|
Sbjct 1036 CGAGAACCAAGCTCTCCGAGATATTCCTCTCTCTCTGATGAACCAGTGGAAAGATGAATTCAAGGCACACTCAA 1109
Query 311 GGGTGAAGTGTCCAAACTCAGGGTGCTGGCTGGAGTTCCCCAGCATCTACGGGCTCAAGTACCATTACCAGCGG 384
|||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.||.||||||
Sbjct 1110 GGGTGAAGTGTCCAAACTCAGGGTGCTGGCTAGAGTTCCCCAGCATCTATGGGCTCAAGTACCACTATCAGCGG 1183
Query 385 TGCCAAGG------------------------------------------------------------------ 392
||||||||
Sbjct 1184 TGCCAAGGGGTAAGGGGCTGTGGGCCAGGGAAGAGGAGGCCTGGGGGTGCATCTGGGCAGAGGCCCCCGGGGCC 1257
Query 393 ---------------------------GGGTGCCATCTCAGATCGCCTGGCCTTCCCCTGCCCCTTCTGCGAGG 439
||||||.|||||||||.|.|||||||||||.||||||||||||||||
Sbjct 1258 CCATCCCACACCTGCCCTCCCTGCCCAGGGTGCTATCTCAGATAGGCTGGCCTTCCCTTGCCCCTTCTGCGAGG 1331
Query 440 CCGCATTCACCTCTAAGACCCAGCTGGAGAAACACCGGATCTGGAACCACATGGACCGACCCCTGCCTGCCTCC 513
||||||||||.||.|||||||||||||||||.||||||||.|||||.||||||||||..|||||.||||||.||
Sbjct 1332 CCGCATTCACTTCCAAGACCCAGCTGGAGAAGCACCGGATATGGAATCACATGGACCACCCCCTACCTGCCCCC 1405
Query 514 AAGCCTGGGCCCA-TCAGCAGGCCGGTCACCATCAGCCGGCCTGTTGGGGTCAGCAAGCCCATCGGAGTGAGCA 586
|||||| |||||| |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 AAGCCT-GGCCCAGTCAGCCGGCCGGTCACCATCAGCCGGCCTGTTGGGGTCAGCAAGCCCATCGGAGTGAGCA 1478
Query 587 AACCTGTCACTATTGGCAAACCTGTGGGTGTCAGCAAACCCATTGGCATCAGCAAGCCAGTCTCGGTCGGCAGA 660
|||||||.|||.||||||||||.||||||||||||||.||||||||||||||.|||||||
Sbjct 1479 AACCTGTTACTGTTGGCAAACCAGTGGGTGTCAGCAAGCCCATTGGCATCAGTAAGCCAG-------------- 1538
Query 661 CCAATGCCAGTCACCAAGGCCATCCCGGTCACTAGGCCCGTGCCAGTCACCAAACCTGTCACAGTCAGCAGGCC 734
||.|.||||.||||||..|.||||||||||||||||||||||||||.|||||
Sbjct 1539 ----------------------TCACAGTCAGTAGGCCTATACCAGTCACCAAACCTGTCACAGTCAGTAGGCC 1590
Query 735 CATGCCCGTCACCAAGGCC-ATGCCGGTCACCAAACCCATCACAGTCACCAAGTCTGTGCCGGTCACCAAACCC 807
|||||..||| .|.||||| .||||.||||||||.||||||.||.|.|||||..|||||||..|||||||||..
Sbjct 1591 CATGCAAGTC-TCTAGGCCTGTGCCAGTCACCAAGCCCATCCCAATTACCAAACCTGTGCCACTCACCAAACAT 1663
Query 808 GTACCTGTCACCAAACCCATTACGGTCACAAAGCTTGTGACAGTTACGAAACCCGTGCCGGTCACCAAGCCAGT 881
.|.||.||.||| |||||||||||||||.|.|||||.|||||..|||||||||||||
Sbjct 1664 ATGCCAGTTACC------------------AAGCTTGTGACAGTTTCAAAACCTGTGCCACTCACCAAGCCAGT 1719
Query 882 GACAGTCAGCAGGCCCATTGTGGTCAGCAAGCCGGTGACAGTCAGCAGGCCCATTGCTATCAGCAGACACACAC 955
..|||||||||||||||||||||||||||||||.|||.|.||||||||||||||.||.|||||||||||||.||
Sbjct 1720 ACCAGTCAGCAGGCCCATTGTGGTCAGCAAGCCTGTGCCGGTCAGCAGGCCCATCGCCATCAGCAGACACATAC 1793
Query 956 CGCCCTGCAAAATGGTGCTGCTGACCAGGTCGGAGAACAAAGCACCTCGTGCCACAGGGAGGAACAGTGGTAAG 1029
|.|||||||||||||||.|||||.|||..||.|||||||||.|||.||||||.|||||.|.||||||...||||
Sbjct 1794 CACCCTGCAAAATGGTGTTGCTGTCCAAATCTGAGAACAAAACACTTCGTGCTACAGGCAAGAACAGCAATAAG 1867
Query 1030 AAAAGGGCTGCGGACAGCCTGGACACCTGCCCAATTCCACCCAAGCAGGCCAGGCCAGAGAATGGGGAGTACGG 1103
|||||||||||.|||||..|||||||||||||.||.|...||||||||||.||||||||||||||.|..|||||
Sbjct 1868 AAAAGGGCTGCAGACAGTTTGGACACCTGCCCCATCCTGTCCAAGCAGGCAAGGCCAGAGAATGGAGCATACGG 1941
Query 1104 CCCCTCCTCCATGGGCCAGAGCTCGGCCTTCCAGCTGAGTGCAGACACCAGCAGTGGCTCCTTGTCGCCAGGCA 1177
|||.|||..|||||.||||||...|.||||||..||||||.||||..|.||| ||||
Sbjct 1942 CCCATCCAGCATGGACCAGAGTGTGACCTTCCCACTGAGTACAGATCCTAGC------------------GGCA 1997
Query 1178 GCAGGCCGTCAGG--GGGCATGGAGGCACTGAAGGCTGCAGGCCCTGCGTCCCCGCCTGAGGAGGACCCGGAGC 1249
||||||| |..| |||||..|||||||||..|.||..||||||.|.|||||.|||.|||||.|||||.||||
Sbjct 1998 GCAGGCC--CCTGATGGGCAAAGAGGCACTGCGGCCTATAGGCCCAGTGTCCCAGCCCGAGGAAGACCCTGAGC 2069
Query 1250 GCACAAAGCACAGAAGGAAACAGAAAACACCCAAAAAGTTTACAGGGGAGCAGCCATCCATCTCAGGGACCTTT 1323
|||||||||||||||||||||||||||||||.||.||.||.|||||||||||.|||||.|||||||||||||||
Sbjct 2070 GCACAAAGCACAGAAGGAAACAGAAAACACCGAAGAAATTCACAGGGGAGCAACCATCTATCTCAGGGACCTTT 2143
Query 1324 GGGCTCAAAGGCCTGGTCAAAGCTGAGGACAAGGCCCGAGTTCACCGCTCCAAGAAGCAGGAGGGGCCAGGCCC 1397
||||||||||||||||.|||||||||.||||||||.||||||||.||||||||||||||.|||||..|||||.|
Sbjct 2144 GGGCTCAAAGGCCTGGCCAAAGCTGAAGACAAGGCTCGAGTTCATCGCTCCAAGAAGCAAGAGGGATCAGGCTC 2217
Query 1398 TGAGGACGCCCGGAAGAAGGTGCCAGCTGCCCCAATCACTGTCAGCAAGGAGGCACCGGCCCCTGTGGCCCACC 1471
||||||.|..|||||||||||||..||..||||..||||||||||||||||||||||..|.||||||||.||||
Sbjct 2218 TGAGGAAGTGCGGAAGAAGGTGCTGGCCACCCCTGTCACTGTCAGCAAGGAGGCACCAACTCCTGTGGCTCACC 2291
Query 1472 CAGCTCCAGGTGGCCCTGAAGAGCAGTGGCAGAGGGCCATCCATGAGCGCGGGGAAGCCGTCTGCCCCACCTGC 1545
||||.|||||||||||.||.||||||||||||.|.|||||||||||.||.|||||.||.|||||||||||||||
Sbjct 2292 CAGCCCCAGGTGGCCCGGAGGAGCAGTGGCAGCGAGCCATCCATGAACGGGGGGAGGCTGTCTGCCCCACCTGC 2365
Query 1546 AACGTGGTCACCCGGAAGACTCTCGTGGGGCTCAAGAAGCACATGGAGGTGTGTCAGAAGCTTCAGGATGCACT 1619
||||||||.|||||||||||.||||||||.|||||.|||||||||||.||.|||||.|||.|.|||||.|||||
Sbjct 2366 AACGTGGTTACCCGGAAGACCCTCGTGGGACTCAAAAAGCACATGGAAGTATGTCACAAGTTGCAGGAAGCACT 2439
Query 1620 CAAGTGCCAGCACTGCCGGAAGCAGTTCAAGTCCAAAGCCGGCCTCAACTACCACACTATGGCCGAGCACAGTG 1693
|||.||.|||||||||||.||.||.|||||||||||.||.|||||||||||||||||.|||||.||.|||||||
Sbjct 2440 CAAATGTCAGCACTGCCGAAAACAATTCAAGTCCAAGGCTGGCCTCAACTACCACACCATGGCTGAACACAGTG 2513
Query 1694 CCA------------------------AGCCCTCTGACGCCGAGGCCTCCGAAGGGGGCGAGCAGGAGGAGCGC 1743
||| |||||.|.||.||.||||||||.||||||||.||.|||||||||||.
Sbjct 2514 CCAAGGTCTGAGGCTTGCTCTGTCTCCAGCCCACGGATGCTGAGGCCTCTGAAGGGGGAGAACAGGAGGAGCGG 2587
Query 1744 GAGAGGCTGCGCAAGGTGCTGAAGCAGATGGGACGGCTGCGCTGCCCCCAGGAGGGTTGCGGGGCTGCCTTCTC 1817
||||||||.||.|||||||||||||||||||||.||||||||||||||||.|||||.||.||||||||||||||
Sbjct 2588 GAGAGGCTTCGAAAGGTGCTGAAGCAGATGGGAAGGCTGCGCTGCCCCCAAGAGGGCTGTGGGGCTGCCTTCTC 2661
Query 1818 CAGCCTCATGGGCTACCAGTACCACCAGCGGCGCTGCGGGAAGCCGCCCTGCGAGGTGGACAGCCCCTCCTTCC 1891
||||||||||||.||.||.|||||||||||||||||.||||||||.|||||.|||||.|||||.||||||||||
Sbjct 2662 CAGCCTCATGGGTTATCAATACCACCAGCGGCGCTGTGGGAAGCCACCCTGTGAGGTAGACAGTCCCTCCTTCC 2735
Query 1892 CCTGCACCCACTGTGGCAAGACGTACCGATCCAAGGCTGGCCACGACTACCACGTGCGCTCGGAGCACACGGCC 1965
||||.|||||||||||||||||.||||||||||||||||||||||||||.||.|||||.||.||||||||.|||
Sbjct 2736 CCTGTACCCACTGTGGCAAGACTTACCGATCCAAGGCTGGCCACGACTATCATGTGCGTTCAGAGCACACAGCC 2809
Query 1966 CCCCCCCCTGAGGAGCCCACAGACAAGTCCCCTGAGGCTGAGGACCCGCTGGGTGTGGAGCGGACCCCAAGCGG 2039
||.||.||||||||.||||||||
Sbjct 2810 CCGCCTCCTGAGGATCCCACAGA--------------------------------------------------- 2832
Query 2040 GCGTGTCCGCCGCACGTCGGCCCAGGTGGCGGTGTTCCACCTGCAGGAGATAGCGGAGGACGAGCTGGCCCGCG 2113
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2114 ACTGGACCAAGCGGCGCATGAAGGATGACCTTGTGCCCGAGACCGCACGGCTCAACTACACTCGACCAGGGCTC 2187
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2188 CCCACGCTGAACCCCCAGCTGCTAGAGGCATGGAAGAATGAAGTGAAGGAGAAAGGCCACGTCAACTGTCCCAA 2261
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2262 CGACTGCTGTGAAGCCATCTACTCCAGCGTGTCCGGACTCAAGGCTCATCTCGCCAGCTGCAGTAAGGGGGCCC 2335
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2336 ACCTGGCAGGGAAGTACCGCTGTCTGCTGTGTCCGAAGGAGTTCAGTTCTGAGAGTGGCGTCAAATACCACATC 2409
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2410 CTGAAGACCCACGCAGAGAACTGGTTCCGAACATCAGCAGACCCACCTCCCAAACACAGGAGCCAGGACTCATT 2483
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2484 GGTGCCCAAGAAGGAAAAGAAGAAAAATCTGGCAGGTGGAAAGAAGCGGGGCCGAAAGCCCAAGGAGCGGACCC 2557
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2558 CAGAGGAGCCTGTGGCCAAGCTGCCCCCGCGCCGGGACGACTGGCCTCCAGGATGCAGAGACAAGGGGGCCCGG 2631
Sbjct 2833 -------------------------------------------------------------------------- 2832
Query 2632 GGCTCCACCGGCCGGAAGGTGGGAGTCAGCAAGGCGCCTGAAAAG 2676
Sbjct 2833 --------------------------------------------- 2832
