Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08804
Subject:
XM_006722836.2
Aligned Length:
1460
Identities:
1135
Gaps:
319

Alignment

Query    1  ATGGCCCGCCTGACGGAGAGCGAGGCGCGCCGGCAGCAGCAGCAGCTCCTGCAGCCGCGGCCCTCGCCCGTGGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CAGCAGCGGGCCCGAGCCCCCCGGGGGGCAGCCCGACGGCATGAAGGACCTGGACGCCATCAAACTCTTCGTGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GCCAGATCCCCCGGCACCTGGACGAGAAGGACCTCAAGCCGCTCTTCGAGCAGTTCGGCCGCATCTACGAGCTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ACGGTGCTCAAAGACCCCTACACGGGGATGCACAAAGGCTGTGCCTTCCTCACCTACTGTGCCAGGGATTCCGC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CATCAAAGCTCAGACTGCCCTGCACGAG----CAGAAGACCTTGCCCG-GAATGGCGCGGCCAATCCAGGTGAA  365
                 |.|| |||.|||    ||.||.|    |||        |||.| |.|||||||||||||||||||||||
Sbjct    1  -----ATGC-CAGCCTG----GCGCGCGTCTCCAG--------GCCGGTGGATGGCGCGGCCAATCCAGGTGAA  56

Query  366  GCCTGCGGACAGTGAAAGCCGCGGAGGTAGGGACCGGAAGCTGTTCGTGGGGATGCTGAACAAGCAGCAGTCGG  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   57  GCCTGCGGACAGTGAAAGCCGCGGAGGTAGGGACCGGAAGCTGTTCGTGGGGATGCTGAACAAGCAGCAGTCGG  130

Query  440  AGGAGGACGTGCTGCGGCTGTTCCAGCCCTTCGGGGTCATTGACGAGTGCACCGTGCTCCGGGGGCCTGACGGC  513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  131  AGGAGGACGTGCTGCGGCTGTTCCAGCCCTTCGGGGTCATTGACGAGTGCACCGTGCTCCGGGGGCCTGACGGC  204

Query  514  AGCAGCAAAGGCTGTGCTTTCGTGAAGTTCTCCTCCCACACGGAGGCGCAGGCGGCCATCCACGCCTTGCATGG  587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  AGCAGCAAAGGCTGTGCTTTCGTGAAGTTCTCCTCCCACACGGAGGCGCAGGCGGCCATCCACGCCTTGCATGG  278

Query  588  GAGCCAGACCATGCCGGGAGCCTCCTCCAGCCTGGTGGTCAAGTTCGCCGACACGGACAAGGAGCGGACGCTCC  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  GAGCCAGACCATGCCGGGAGCCTCCTCCAGCCTGGTGGTCAAGTTCGCCGACACGGACAAGGAGCGGACGCTCC  352

Query  662  GGCGCATGCAGCAGATGGTGGGCCAGCTGGGCATCCTGACGCCGTCCCTCACATTGCCCTTCAGCCCCTACAGT  735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  GGCGCATGCAGCAGATGGTGGGCCAGCTGGGCATCCTGACGCCGTCCCTCACATTGCCCTTCAGCCCCTACAGT  426

Query  736  GCCTACGCCCAGGCTCTCATGCAACAGCAGACAACAGTCCTGTCCACCTCGGGCAGCTACCTGAGTCCCGGCGT  809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  GCCTACGCCCAGGCTCTCATGCAACAGCAGACAACAGTCCTGTCCACCTCGGGCAGCTACCTGAGTCCCGGCGT  500

Query  810  GGCCTTCTCACCCTGTCACATCCAGCAGATAGGCGCCGTCAGCCTCAACGGGCTGCCTGCCACACCCATCGCTC  883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  GGCCTTCTCACCCTGTCACATCCAGCAGATAGGCGCCGTCAGCCTCAACGGGCTGCCTGCCACACCCATCGCTC  574

Query  884  CTGCCTCTGGGCTGCACTCACCCCCGCTGCTGGGCACCACCGCTGTGCCTGGCCTCGTGGCTCCCATCACCAAT  957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  575  CTGCCTCTGGGCTGCACTCACCCCCGCTGCTGGGCACCACCGCTGTGCCTGGCCTCGTGGCTCCCATCACCAAT  648

Query  958  GGCTTTGCAGGTGTCGTGCCCTTTCCAGGTGGGCACCCTGCCCTGGAAACCGTCTATGCCAATGGCCTTGTGCC  1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  649  GGCTTTGCAGGTGTCGTGCCCTTTCCAGGTGGGCACCCTGCCCTGGAAACCGTCTATGCCAATGGCCTTGTGCC  722

Query 1032  CTACCCAGCTCAGAGCCCGACTGTGGCCGAGACACTGCATCCTGCCTTCTCCGGAGTCCAGCAGTACACAGCCA  1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  723  CTACCCAGCTCAGAGCCCGACTGTGGCCGAGACACTGCATCCTGCCTTCTCCGGAGTCCAGCAGTACACAGCCA  796

Query 1106  TGTACCCCACCGCGGCCATCACGCCCATCGCGCACAGCGTCCCCCAGCCGCCGCCCCTCCTGCAGCAGCAGCAG  1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  797  TGTACCCCACCGCGGCCATCACGCCCATCGCGCACAGCGTCCCCCAGCCGCCGCCCCTCCTGCAGCAGCAGCAG  870

Query 1180  CGAGAAGGTCCCGAGGGCTGTAACCTGTTTATCTACCACCTCCCCCAGGAGTTTGGAGACACGGAGCTGACGCA  1253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  871  CGAGAAGGTCCCGAGGGCTGTAACCTGTTTATCTACCACCTCCCCCAGGAGTTTGGAGACACGGAGCTGACGCA  944

Query 1254  GATGTTCCTACCCTTCGGCAATATCATTTCCTCCAAGGTGTTTATGGATCGAGCTACCAACCAGAGCAAGTGTT  1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  945  GATGTTCCTACCCTTCGGCAATATCATTTCCTCCAAGGTGTTTATGGATCGAGCTACCAACCAGAGCAAGTGTT  1018

Query 1328  TCGGCTTCGTGAGCTTTGATAACCCGGCCAGCGCCCAGGCAGCCATCCAGGCCATGAACGGCTTCCAGATCGGC  1401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019  TCGGCTTCGTGAGCTTTGATAACCCGGCCAGCGCCCAGGCAGCCATCCAGGCCATGAACGGCTTCCAGATCGGC  1092

Query 1402  ATGAAGAGGCTCAAAGTCCAGCTGAAGCGGCCCAAAGACCCGGGACACCCCTAC  1455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093  ATGAAGAGGCTCAAAGTCCAGCTGAAGCGGCCCAAAGACCCGGGACACCCCTAC  1146

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.