Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08866
Subject:
XR_001737363.2
Aligned Length:
4371
Identities:
1223
Gaps:
3147

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTGCTGGTTTGCCCTCCCCCTGGTGTTGGCCCGGCTGACTCGGGGTAGGGGAGGTCGGGGAGGGGGCGATAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGGCGCAGGGGGCGGAGTGAGGCGCAGTCGTTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTTGGTCTCGTGGCAA  222

Query    1  --------------------------------ATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC  42
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC  296

Query   43  TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT  116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT  370

Query  117  GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG  444

Query  191  AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT  518

Query  265  CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT  592

Query  339  CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG  412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG  666

Query  413  TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG  740

Query  487  GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG  814

Query  561  CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC  888

Query  635  TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT  962

Query  709  GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA  1036

Query  783  GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG  1110

Query  857  GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT  1184

Query  931  CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA  1258

Query 1005  CCCAGAGGACACTAACCA---------------------------------------------------AGGTA  1027
            ||||||||||||||||||                                                   |||||
Sbjct 1259  CCCAGAGGACACTAACCAAGGAAAATCAGTCAAGATTTCTACTAGATCATCGCAGTTTTGTTGACCTAGAGGTA  1332

Query 1028  TCTCGGGGGAGCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGAC  1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TCTCGGGGGAGCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGAC  1406

Query 1102  CTCACCACGCGAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAA  1175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CTCACCACGCGAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAA  1480

Query 1176  CATGCGAAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGA-------------------------  1224
            ||||||||||||||||||||||||||||||||||||||||||||||||.                         
Sbjct 1481  CATGCGAAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGTTAATTTGTGTCATCCCATCAGCAAT  1554

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1555  GAAGGTCCCTATCCAGGGTCCTGCTTGGAGCAGCATTTCATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTG  1628

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1629  GATTTTATTTTTCACAAAATTTTTATTTAAAAAACTCGTCACCTTTTGGAAATGCCCATTGCCGACTTGAATTT  1702

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1703  TTTTGTATGAAGTCCCTCCTGATTTTGTGTGTGTGTGTCTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTT  1776

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1777  TTTTGTTTTTTTAATTTAAATTGAAGGTAGCTGCCTCCTGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAA  1850

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1851  GCAAAAGACCCACCTCTCTGCAGAGGCAAAGTCTACTTTCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCA  1924

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1925  TAAGGAAGAGATTCTTTACCAGGCTGTGAGCCAGTGTTAGATAACTTGTGAATGGATATAAGTTACTTTTAACA  1998

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 1999  ACCCCTCTTACTTTTTTATTTGAATCCTCTGAATACCTGTCAGTATTTTAAAGTTGGCAATCCAGGACATTATA  2072

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2073  AGTAGGATGGAGCAGGAGAAGAATCCTATTGAAAGGACAAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGT  2146

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2147  AGGTACTAGCTGCCTTGATTTTTTTTTGTGGGTGGGGGGGATTTTTTCATTCCTTATTGAACTTATTTTGCACA  2220

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2221  ATAGTGTTTACAAATCTTATACATCTTACTTTGACAGAAGACTTATAATACCTTGTGGTCTTGAGACTGGTTGT  2294

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2295  CTCCTTTGCCTTTCTTCAAGGATTTTCCTTTTTCTTTTTACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTA  2368

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2369  GTGGCAGTATTCTTGTAACCTGTTAGACGTGGATATACCTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAG  2442

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2443  AGCTGCCCACCCAGAGTCTTGACTCTAGGGCAGGCTAGTGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTT  2516

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2517  GCTGAACCCCAAATTTGAGTGTTAGTTAGGGAGCCTCCATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTC  2590

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2591  TCCATATTAGTTAACAAGAGGTGTCTTTAGGCCCTGGATGTTACCATCTCATTTGGTCAAGCCCCTGATACCTA  2664

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2665  GTTTCACATGGATGCTAACGTGGATGTAATATAGTTGTGACAGCCTATGCACAAAAGCATTACCTGATCTTAAG  2738

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2739  GTTTGGTATTCTAACCAAAGTTGACAGACTGTGCGTCTGTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTC  2812

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2813  TTTTTTTTTTGAGACGGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCACCACAAC  2886

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2887  CTCCGCCTCCTGGGTTCAAGGGATTCTCCTGTCTTAGCCTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCA  2960

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 2961  TGCCTGGCTAATTTCATATTTTTTAGTAGAGACAGGATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGA  3034

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3035  CCTCAGGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGGTT  3108

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3109  ATTCTCTCTTTACAGATAGCTATAGACATCATTTTAGGAAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATT  3182

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3183  CTCTGTGAAGGCTGTTCATAGTTGCTATAGCCTGTGTTTAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGT  3256

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3257  GAGTAATGCATTCTAAACATCCTACCCCACTTTAGAAACGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAA  3330

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3331  TAAATTTAGGTGAATGTCCCTAAGTGTTTACTGTTTTTATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGT  3404

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3405  TTTAAATTCTGGGGCCAAAATGCAAAGGAGAAGTTCTATTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTA  3478

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3479  GCCTACTTGGCATTTACTACATCGGTCACTTCTCCAGGCTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCA  3552

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3553  AACATCCACCTTTGGGACCATAGCATAGTTAAAATTAAATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAG  3626

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3627  GGAACTGTAGTCTAGTTCCCTACAGAAAACCCAAGGAGTGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAG  3700

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3701  ACTCGTGCCCTCCTGGTACATGGGGTTTTAAGACTGAATGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATG  3774

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3775  AGTGACAGGTTAACTAGAAAATGTGACAATCACATTTCCTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTT  3848

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3849  AGCAGCTTAATTAAATCTGTTGGACTGGGGGAGGAGAGAGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAG  3922

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3923  AAGAAAAAACAAAGCCAAAGAAAACTCATTATCTGGCATGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGA  3996

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 3997  GTTTTCATCTCTTTTCAAAGCTGCATATCTCTTATATTTGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAA  4070

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4071  TTCTTGCTGTATTATTTTTTAAGCAAGTGTTAGGTGCATTTAACTGCTTTCTTCATCCATGACGACATTCCCAC  4144

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4145  CATGGGGGTCTTGACAAAGCAGAGTAAAAATATGCTGTTTACATTGTTTACTTACAAGTAAGGAGCCTGAAATA  4218

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4219  ACCTGTAGTTTCGAATGCAGGCCCTGATTTACTGGCGTTGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCT  4292

Query 1225  --------------------------------------------------------------------------  1224
                                                                                      
Sbjct 4293  CCTCTTTATCATGTTTTTTCCCTTGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAG  4366

Query 1225  -----  1224
                 
Sbjct 4367  TGACA  4371

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