Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08866
- Subject:
- XR_001737364.2
- Aligned Length:
- 4366
- Identities:
- 1223
- Gaps:
- 3142
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTGCTGGTTTGCCCTCCCCCTGGTGTTGGCCCGGCTGACTCGGGGTAGGGGAGGTCGGGGAGGGGGCGATAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATGGCGCAGGGGGCGGAGTGAGGCGCAGTCGTTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTTGGTCTCGTGGCAA 222
Query 1 --------------------------------ATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC 296
Query 43 TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT 370
Query 117 GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG 444
Query 191 AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT 518
Query 265 CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT 592
Query 339 CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG 666
Query 413 TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG 740
Query 487 GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG 814
Query 561 CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC 888
Query 635 TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT 962
Query 709 GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA 1036
Query 783 GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG 1110
Query 857 GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT 1184
Query 931 CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA 1258
Query 1005 CCCAGAGGACACTAACC----------------------------------------------AAGGTATCTCG 1032
||||||||||||||||| |||||||||||
Sbjct 1259 CCCAGAGGACACTAACCAAGCCAAAAAATACTGGAAACAGCTTTGATAAAATGTTGATAAATGAAGGTATCTCG 1332
Query 1033 GGGGAGCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCAC 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGGGAGCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCAC 1406
Query 1107 CACGCGAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGC 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CACGCGAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGC 1480
Query 1181 GAAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGA------------------------------ 1224
|||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1481 GAAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGTTAATTTGTGTCATCCCATCAGCAATGAAGG 1554
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1555 TCCCTATCCAGGGTCCTGCTTGGAGCAGCATTTCATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTGGATTT 1628
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1629 TATTTTTCACAAAATTTTTATTTAAAAAACTCGTCACCTTTTGGAAATGCCCATTGCCGACTTGAATTTTTTTG 1702
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1703 TATGAAGTCCCTCCTGATTTTGTGTGTGTGTGTCTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTTTTTTG 1776
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1777 TTTTTTTAATTTAAATTGAAGGTAGCTGCCTCCTGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAAGCAAA 1850
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1851 AGACCCACCTCTCTGCAGAGGCAAAGTCTACTTTCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCATAAGG 1924
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1925 AAGAGATTCTTTACCAGGCTGTGAGCCAGTGTTAGATAACTTGTGAATGGATATAAGTTACTTTTAACAACCCC 1998
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 1999 TCTTACTTTTTTATTTGAATCCTCTGAATACCTGTCAGTATTTTAAAGTTGGCAATCCAGGACATTATAAGTAG 2072
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2073 GATGGAGCAGGAGAAGAATCCTATTGAAAGGACAAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGTAGGTA 2146
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2147 CTAGCTGCCTTGATTTTTTTTTGTGGGTGGGGGGGATTTTTTCATTCCTTATTGAACTTATTTTGCACAATAGT 2220
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2221 GTTTACAAATCTTATACATCTTACTTTGACAGAAGACTTATAATACCTTGTGGTCTTGAGACTGGTTGTCTCCT 2294
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2295 TTGCCTTTCTTCAAGGATTTTCCTTTTTCTTTTTACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTAGTGGC 2368
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2369 AGTATTCTTGTAACCTGTTAGACGTGGATATACCTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAGAGCTG 2442
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2443 CCCACCCAGAGTCTTGACTCTAGGGCAGGCTAGTGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTTGCTGA 2516
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2517 ACCCCAAATTTGAGTGTTAGTTAGGGAGCCTCCATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTCTCCAT 2590
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2591 ATTAGTTAACAAGAGGTGTCTTTAGGCCCTGGATGTTACCATCTCATTTGGTCAAGCCCCTGATACCTAGTTTC 2664
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2665 ACATGGATGCTAACGTGGATGTAATATAGTTGTGACAGCCTATGCACAAAAGCATTACCTGATCTTAAGGTTTG 2738
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2739 GTATTCTAACCAAAGTTGACAGACTGTGCGTCTGTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTCTTTTT 2812
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2813 TTTTTGAGACGGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCACCACAACCTCCG 2886
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2887 CCTCCTGGGTTCAAGGGATTCTCCTGTCTTAGCCTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCATGCCT 2960
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 2961 GGCTAATTTCATATTTTTTAGTAGAGACAGGATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCA 3034
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3035 GGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGGTTATTCT 3108
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3109 CTCTTTACAGATAGCTATAGACATCATTTTAGGAAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATTCTCTG 3182
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3183 TGAAGGCTGTTCATAGTTGCTATAGCCTGTGTTTAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGTGAGTA 3256
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3257 ATGCATTCTAAACATCCTACCCCACTTTAGAAACGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAATAAAT 3330
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3331 TTAGGTGAATGTCCCTAAGTGTTTACTGTTTTTATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGTTTTAA 3404
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3405 ATTCTGGGGCCAAAATGCAAAGGAGAAGTTCTATTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTAGCCTA 3478
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3479 CTTGGCATTTACTACATCGGTCACTTCTCCAGGCTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCAAACAT 3552
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3553 CCACCTTTGGGACCATAGCATAGTTAAAATTAAATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAGGGAAC 3626
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3627 TGTAGTCTAGTTCCCTACAGAAAACCCAAGGAGTGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAGACTCG 3700
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3701 TGCCCTCCTGGTACATGGGGTTTTAAGACTGAATGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATGAGTGA 3774
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3775 CAGGTTAACTAGAAAATGTGACAATCACATTTCCTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTTAGCAG 3848
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3849 CTTAATTAAATCTGTTGGACTGGGGGAGGAGAGAGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAGAAGAA 3922
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3923 AAAACAAAGCCAAAGAAAACTCATTATCTGGCATGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGAGTTTT 3996
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 3997 CATCTCTTTTCAAAGCTGCATATCTCTTATATTTGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAATTCTT 4070
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4071 GCTGTATTATTTTTTAAGCAAGTGTTAGGTGCATTTAACTGCTTTCTTCATCCATGACGACATTCCCACCATGG 4144
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4145 GGGTCTTGACAAAGCAGAGTAAAAATATGCTGTTTACATTGTTTACTTACAAGTAAGGAGCCTGAAATAACCTG 4218
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4219 TAGTTTCGAATGCAGGCCCTGATTTACTGGCGTTGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCTCCTCT 4292
Query 1225 -------------------------------------------------------------------------- 1224
Sbjct 4293 TTATCATGTTTTTTCCCTTGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAGTGACA 4366
