Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08875
Subject:
NM_001282806.1
Aligned Length:
2122
Identities:
1893
Gaps:
227

Alignment

Query    1  ATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGAT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGAT  74

Query   75  GTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAAT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAAT  148

Query  149  ATCAGTCTACATCAGCATCAGCATCTGCGTCACCATTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATCAGTCTACATCAGCATCAGCATCTGCGTCACCATTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAG  222

Query  223  GGAGCACGCTCAAGATCGCAGAACCAGCAACGGGATCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGAGCACGCTCAAGATCGCAGAACCAGCAACGGGATCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTG  296

Query  297  TACTACCTCAGCTGGGAGAAATGTTGGAAATGGTTTAAACACATTATCAGATTCATCTTGGAGGCATAGTCAAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||                        
Sbjct  297  TACTACCTCAGCTGGGAGAAATGTTGGAAATGGTTTAAACACATTATCAG------------------------  346

Query  371  TTCCTAGATCTTCATCAATGGTACTTGGATCATTTGGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGA  444
                                                                                      
Sbjct  347  --------------------------------------------------------------------------  346

Query  445  AGAACAGATTCCTCTATTAGTAATCTTATGGATTATAGTCACCGAAGTGGTGATTTCACAACTTCATCATATGT  518
                                                                                  ||||
Sbjct  347  ----------------------------------------------------------------------ATGT  350

Query  519  TCAAGACAGAGTTCCTTCATATTCACAAGGAGCAAGACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  TCAAGACAGAGTTCCTTCATATTCACAAGGAGCAAGACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATA  424

Query  593  CATCATCCACAAACCACCAATTGCCTTCTGAACATCAGACCATACTAAGTTCTAGGGATTCCAGAAATTCTTTA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  425  CATCATCCACAAACCACCAATTGCCTTCTGAACATCAGACCATACTAAGTTCTAGGGACTCCAGAAATTCTTTA  498

Query  667  AGATCAAATTTTTCTTCAAGAGAATCAGAATCTTCCCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAG  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  499  AGATCAAATTTTTCTTCAAGAGAATCAGAATCTTCCCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAG  572

Query  741  TAGAGATGAAGCCCCAATCATAAGCAATTCAGAAAGGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  573  TAGAGATGAAGCCCCAATCATAAGCAATTCAGAAAGGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTG  646

Query  815  ACAATGAAGGTAGGCGGACAACGAGGAGATTGCTGTCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  647  ACAATGAAGGTAGGCGGACAACGAGGAGATTGCTGTCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCA  720

Query  889  CGAAGATCTAGTCAGGATTCCTTGAATACAAGATCATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721  CGAAGATCTAGTCAGGATTCCTTGAATACAAGATCATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTT  794

Query  963  GACAGCTTCACAGTCCCGTAGTAATGTACCATCAGCTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  795  GACAGCTTCACAGTCCCGTAGTAATGTACCATCAGCTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTC  868

Query 1037  AGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTGTCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  869  AGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTGTCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCA  942

Query 1111  GAAAATTTTAACCAAGAATCTGAAGGTAGAAATACAGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCAC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  943  GAAAATTTTAACCAAGAATCTGAAGGTAGAAATACAGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCAC  1016

Query 1185  ACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAGATGAATCTTCAAGGATACCTACCTCTGATACATCATCTA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017  ACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAGATGAATCTTCAAGGATACCTACCTCTGATACATCATCTA  1090

Query 1259  GATCTCATATTTTTAGAAGAGAATCAAATGAAGTGGTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091  GATCTCATATTTTTAGAAGAGAATCAAATGAAGTGGTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCT  1164

Query 1333  GCCAACAGACCACAAGCATCTGCAGCATCAAGCAGTGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165  GCCAACAGACCACAAGCATCTGCAGCATCAAGCAGTGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGG  1238

Query 1407  TGGAAGAAATACAGGAATATCAGGGATTCTTCCTGGTTCCTTATTCCGGTTTGCAGTCCCCCCAGCACTTGGGA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1239  TGGAAGAAATACAGGAATATCAGGGATTCTTCCTGGTTCCTTATTCCGGTTTGCAGTCCCTCCAGCACTTGGGA  1312

Query 1481  GTAATTTGACCGACAATGTCATGATCACAGTAGATATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313  GTAATTTGACCGACAATGTCATGATCACAGTAGATATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGT  1386

Query 1555  GATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGAAAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387  GATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGAAAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGA  1460

Query 1629  CTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTTGTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461  CTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTTGTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAG  1534

Query 1703  AGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTCCACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATT  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535  AGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTCCACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATT  1608

Query 1777  AACTCTGGTTCTTCATTAGAAGCTGTAACCACCTGTGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609  AACTCTGGTTCTTCATTAGAAGCTGTAACCACCTGTGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGA  1682

Query 1851  TTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAACAAGCTGAGTATGAGTTTATCAGCTCTGGTCTCT  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683  TTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAACAAGCTGAGTATGAGTTTATCAGCTCTGGTCTCT  1756

Query 1925  ACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACA  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757  ACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACA  1830

Query 1999  CGTGTCCGATTTATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGGATGATTC  2072
            ||||||||                                                 |||||||||||||||||
Sbjct 1831  CGTGTCCG-------------------------------------------------ACTTCAGAGGATGATTC  1855

Query 2073  CGAAGAAGACGGAGACCATAACAGGACATTTGATATTGCC----------  2112
            ||||||||||||||||||||||||||||||||||||||||          
Sbjct 1856  CGAAGAAGACGGAGACCATAACAGGACATTTGATATTGCCTAACTTCATA  1905

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