Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08875
- Subject:
- XR_427106.1
- Aligned Length:
- 3556
- Identities:
- 2110
- Gaps:
- 1444
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTAACGGTGGTGGCTGGTTCTGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCGCTGCCGACTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTTCCTCAGTCACGGGCCTAGAACTCCAAGGAGAAAGGCGGCGGTGCGTGTTGCTGCGAGTGGGACGCGCACT 148
Query 1 ---------------------------------------ATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAAT 35
|||||||||||||||||||||||||||||||||||
Sbjct 149 GGTCGGTGCCGGCTCAGGAGCCGGGAAAAATCTTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAAT 222
Query 36 TTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCT 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCT 296
Query 110 ATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGCATCAGCATCTGCGTCACCA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGCATCAGCATCTGCGTCACCA 370
Query 184 TTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGATCGCAGAACCAGCAACGGGA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGATCGCAGAACCAGCAACGGGA 444
Query 258 TCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGGAGAAATGTTGGAAATGGTT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGGAGAAATGTTGGAAATGGTT 518
Query 332 TAAACACATTATCAGATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATCAATGGTACTTGGATCATTT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TAAACACATTATCAGATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATCAATGGTACTTGGATCATTT 592
Query 406 GGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTATTAGTAATCTTATGGATTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTATTAGTAATCTTATGGATTA 666
Query 480 TAGTCACCGAAGTGGTGATTTCACAACTTCATCATATGTTCAAGACAGAGTTCCTTCATATTCACAAGGAGCAA 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TAGTCACCGAAGTGGTGATTTCACAACTTCATCATATGTTCAAGACAGAGTTCCTTCATATTCACAAGGAGCAA 740
Query 554 GACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCACCAATTGCCTTCTGAACAT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCACCAATTGCCTTCTGAACAT 814
Query 628 CAGACCATACTAAGTTCTAGGGATTCCAGAAATTCTTTAAGATCAAATTTTTCTTCAAGAGAATCAGAATCTTC 701
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CAGACCATACTAAGTTCTAGGGACTCCAGAAATTCTTTAAGATCAAATTTTTCTTCAAGAGAATCAGAATCTTC 888
Query 702 CCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCAATCATAAGCAATTCAGAAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCAATCATAAGCAATTCAGAAA 962
Query 776 GGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGGACAACGAGGAGATTGCTG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGGACAACGAGGAGATTGCTG 1036
Query 850 TCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGGATTCCTTGAATACAAGATC 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGGATTCCTTGAATACAAGATC 1110
Query 924 ATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCCCGTAGTAATGTACCATCAG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCCCGTAGTAATGTACCATCAG 1184
Query 998 CTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTG 1258
Query 1072 TCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAGAATCTGAAGGTAGAAATAC 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAGAATCTGAAGGTAGAAATAC 1332
Query 1146 AGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAG 1406
Query 1220 ATGAATCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAGAAGAGAATCAAATGAAGTG 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATGAATCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAGAAGAGAATCAAATGAAGTG 1480
Query 1294 GTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAGCATCTGCAGCATCAAGCAG 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAGCATCTGCAGCATCAAGCAG 1554
Query 1368 TGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGAATATCAGGGATTCTTCCTG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGAATATCAGGGATTCTTCCTG 1628
Query 1442 GTTCCTTATTCCGGTTTGCAGTCCCCCCAGCACTTGGGAGTAATTTGACCGACAATGTCATGATCACAGTAGAT 1515
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GTTCCTTATTCCGGTTTGCAGTCCCTCCAGCACTTGGGAGTAATTTGACCGACAATGTCATGATCACAGTAGAT 1702
Query 1516 ATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGA 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGA 1776
Query 1590 AAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTT 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTT 1850
Query 1664 GTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTC 1924
Query 1738 CACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCATTAGAAGCTGTAACCACCTG 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCATTAGAAGCTGTAACCACCTG 1998
Query 1812 TGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAA 1885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAA 2072
Query 1886 ATGAACAA-----------------------GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGT 1936
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 ATGAACAAGTTAGTATATTTTGCCTAATTTGGCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGT 2146
Query 1937 TATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGATTT 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGATTT 2220
Query 2011 ATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGGATGATTCCGAAGAAGACGG 2084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 ATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGGATGATTCCGAAGAAGACGG 2294
Query 2085 AGACCATAACAGGACATTTGATATTGCC---------------------------------------------- 2112
||||||||||||||||||||||||||||
Sbjct 2295 AGACCATAACAGGACATTTGATATTGCCTAACTTCATATAAGACAGATGGATGATCTGTGAACATAAGTGTTTA 2368
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2369 TTAAAAATGGCAATTAAATATAAATTACTTTTGTGGGGGAATGCCTAATAAATACATTGACTATATATAAAATG 2442
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2443 AATATATACATACACATGTATGCCTGTATATATATATTCATTCTCCAGTGTTGCTGAATTAAAATTCTGCTGGA 2516
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2517 CTTTTTAACATAGCAAATCCGATGTTTATAAACTGGTAATCAAAAAGGTTTTTTCTTTTAGGTGAGTGGGAAAG 2590
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2591 TATTACCCTTGTTTTAAATATCTAAGCAATGCCTATCAACCCTTTTTTGTGTTATGATTACTGTAGTCATATTT 2664
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2665 ATGAAAAAAGGTTTGTGTTTTACTCTTGCTAGTGAGAAAAGTGGGACAAAATATACTTTTGAAATAAAATGCTA 2738
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2739 TATGGCACCTAATTATTTTTTCTTTTAAAATGCCTTAAGTTGCAGTCTCATTTTGATAATCATTTGCTTCCAGT 2812
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2813 GTTTAAAAATTAAAAAAAGAATGGGGAGAAGGTTATGAGAAGAGCATTATTAAGTTTCCAAATTTAATTTGAAT 2886
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2887 TCCAAATTCACCTAGCAATAAAATCTAATTTTTAAAAAGTATATAAATATAAAATGTATAAATGATGGATAGAT 2960
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 2961 TTTTGTATTGATTTGCAAAATGCAGATTATATTTGATAGGCTATAGTATGTAGATATTCCTTTTAGGAATATTA 3034
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3035 CAGCTGTAAATTATATGAGACTTGCCAGTCAAATGCTATTTGGTTTAAAAAAATTATTGCAATCTCAAGTTAAT 3108
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3109 GGAATATTTTTAAATCCCACATTCAGAGTTTAAAACACTGGTTTTCAATGTGTTTTTTAGTGTTGTCACTTGTT 3182
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3183 TATAGATAAATATATAAATAACCTGTTTGGATCCTGGTCCTTTTTAACTGTTCCTTGGTAATTCTGAGCATTTA 3256
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3257 TTTGATGACTTAATATTTTTCACTACCTTTGGAGAACAGATGAACATTATTCACCATGAATGGATCTATACTGT 3330
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3331 GTGGTCATGAGTTGTGTATACTTCCATAACACTGTATTTTTCTTCTGTCAGTACCCTTAGGATACACTTTAAAA 3404
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3405 CACCTTAAGGTCTGATGTTATGGCAACAAACTACTTTTTCAAACCTAAATAGGAACCATGTAATTTCTCAAAAG 3478
Query 2113 -------------------------------------------------------------------------- 2112
Sbjct 3479 TGATTGAACAGTTTGCCCACACTTAGTTTGTTGGTCTTATGTAAAACATTGGCTCAAAATAAAGTACACACTGA 3552
Query 2113 ---- 2112
Sbjct 3553 TTTA 3556