Nucleotide Global Alignment

Description

• Query: ccsbBroad304_08875
• Subject: XR_922987.2
• Aligned Length: 3556
• Identities: 2061
• Gaps: 1493

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTAACGGTGGTGGCTGGTTCTGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCGCTGCCGACTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATTTCCTCAGTCACGGGCCTAGAACTCCAAGGAGAAAGGCGGCGGTGCGTGTTGCTGCGAGTGGGACGCGCACT  148

Query    1  ---------------------------------------ATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAAT  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct  149  GGTCGGTGCCGGCTCAGGAGCCGGGAAAAATCTTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAAT  222

Query   36  TTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCT  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCT  296

Query  110  ATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGCATCAGCATCTGCGTCACCA  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAGTCTACATCAGCATCAGCATCTGCGTCACCA  370

Query  184  TTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGATCGCAGAACCAGCAACGGGA  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTCAATCTGCATGGTATAGTGAATCTGAGATAACTCAGGGAGCACGCTCAAGATCGCAGAACCAGCAACGGGA  444

Query  258  TCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGGAGAAATGTTGGAAATGGTT  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCATGATTCAAAAAGACCTAAACTTTCCTGTACAAACTGTACTACCTCAGCTGGGAGAAATGTTGGAAATGGTT  518

Query  332  TAAACACATTATCAGATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATCAATGGTACTTGGATCATTT  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TAAACACATTATCAGATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATCAATGGTACTTGGATCATTT  592

Query  406  GGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTATTAGTAATCTTATGGATTA  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTATTAGTAATCTTATGGATTA  666

Query  480  TAGTCACCGAAGTGGTGATTTCACAACTTCATCATATGTTCAAGACAGAGTTCCTTCATATTCACAAGGAGCAA  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TAGTCACCGAAGTGGTGATTTCACAACTTCATCATATGTTCAAGACAGAGTTCCTTCATATTCACAAGGAGCAA  740

Query  554  GACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCACCAATTGCCTTCTGAACAT  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCACCAATTGCCTTCTGAACAT  814

Query  628  CAGACCATACTAAGTTCTAGGGATTCCAGAAATTCTTTAAGATCAAATTTTTCTTCAAGAGAATCAGAATCTTC  701
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAGACCATACTAAGTTCTAGGGACTCCAGAAATTCTTTAAGATCAAATTTTTCTTCAAGAGAATCAGAATCTTC  888

Query  702  CCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCAATCATAAGCAATTCAGAAA  775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCAATCATAAGCAATTCAGAAA  962

Query  776  GGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGGACAACGAGGAGATTGCTG  849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGGACAACGAGGAGATTGCTG  1036

Query  850  TCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGGATTCCTTGAATACAAGATC  923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGGATTCCTTGAATACAAGATC  1110

Query  924  ATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCCCGTAGTAATGTACCATCAG  997
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCCCGTAGTAATGTACCATCAG  1184

Query  998  CTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTG  1071
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTG  1258

Query 1072  TCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAGAATCTGAAGGTAGAAATAC  1145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAGAATCTGAAGGTAGAAATAC  1332

Query 1146  AGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAG  1219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAG  1406

Query 1220  ATGAATCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAGAAGAGAATCAAATGAAGTG  1293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ATGAATCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAGAAGAGAATCAAATGAAGTG  1480

Query 1294  GTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAGCATCTGCAGCATCAAGCAG  1367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAGCATCTGCAGCATCAAGCAG  1554

Query 1368  TGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGAATATCAGGGATTCTTCCTG  1441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGAATATCAGGGATTCTTCCTG  1628

Query 1442  GTTCCTTATTCCGGTTTGCAGTCCCCCCAGCACTTGGGAGTAATTTGACCGACAATGTCATGATCACAGTAGAT  1515
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GTTCCTTATTCCGGTTTGCAGTCCCTCCAGCACTTGGGAGTAATTTGACCGACAATGTCATGATCACAGTAGAT  1702

Query 1516  ATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGA  1589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGA  1776

Query 1590  AAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTT  1663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AAGATTGCAGAAAATAAAAGAGAGCCTCCTTTTAGAGGACTCAGAAGAAGAAGAAGGTGACTTATGTAGAATTT  1850

Query 1664  GTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTC  1737
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GTCAAATGGCAGCTGCATCATCATCTAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTC  1924

Query 1738  CACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCATTAGAAGCTGTAACCACCTG  1811
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CACCAAGACTGTATGAAAAAGTGGTTACAGGCCAAAATTAACTCTGGTTCTTCATTAGAAGCTGTAACCACCTG  1998

Query 1812  TGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAA  1885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGAACTATGTAAAGAGAAGTTGGAGCTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAA  2072

Query 1886  ATGAACAA-----------------------GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGT  1936
            ||||||||                       |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  ATGAACAAGTTAGTATATTTTGCCTAATTTGGCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGT  2146

Query 1937  TATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGATTT  2010
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct 2147  TATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCG----  2216

Query 2011  ATTAACCTTGCAAGAACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGGATGATTCCGAAGAAGACGG  2084
                                                         |||||||||||||||||||||||||||||
Sbjct 2217  ---------------------------------------------ACTTCAGAGGATGATTCCGAAGAAGACGG  2245

Query 2085  AGACCATAACAGGACATTTGATATTGCC----------------------------------------------  2112
            ||||||||||||||||||||||||||||                                              
Sbjct 2246  AGACCATAACAGGACATTTGATATTGCCTAACTTCATATAAGACAGATGGATGATCTGTGAACATAAGTGTTTA  2319

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2320  TTAAAAATGGCAATTAAATATAAATTACTTTTGTGGGGGAATGCCTAATAAATACATTGACTATATATAAAATG  2393

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2394  AATATATACATACACATGTATGCCTGTATATATATATTCATTCTCCAGTGTTGCTGAATTAAAATTCTGCTGGA  2467

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2468  CTTTTTAACATAGCAAATCCGATGTTTATAAACTGGTAATCAAAAAGGTTTTTTCTTTTAGGTGAGTGGGAAAG  2541

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2542  TATTACCCTTGTTTTAAATATCTAAGCAATGCCTATCAACCCTTTTTTGTGTTATGATTACTGTAGTCATATTT  2615

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2616  ATGAAAAAAGGTTTGTGTTTTACTCTTGCTAGTGAGAAAAGTGGGACAAAATATACTTTTGAAATAAAATGCTA  2689

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2690  TATGGCACCTAATTATTTTTTCTTTTAAAATGCCTTAAGTTGCAGTCTCATTTTGATAATCATTTGCTTCCAGT  2763

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2764  GTTTAAAAATTAAAAAAAGAATGGGGAGAAGGTTATGAGAAGAGCATTATTAAGTTTCCAAATTTAATTTGAAT  2837

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2838  TCCAAATTCACCTAGCAATAAAATCTAATTTTTAAAAAGTATATAAATATAAAATGTATAAATGATGGATAGAT  2911

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2912  TTTTGTATTGATTTGCAAAATGCAGATTATATTTGATAGGCTATAGTATGTAGATATTCCTTTTAGGAATATTA  2985

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 2986  CAGCTGTAAATTATATGAGACTTGCCAGTCAAATGCTATTTGGTTTAAAAAAATTATTGCAATCTCAAGTTAAT  3059

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 3060  GGAATATTTTTAAATCCCACATTCAGAGTTTAAAACACTGGTTTTCAATGTGTTTTTTAGTGTTGTCACTTGTT  3133

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 3134  TATAGATAAATATATAAATAACCTGTTTGGATCCTGGTCCTTTTTAACTGTTCCTTGGTAATTCTGAGCATTTA  3207

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 3208  TTTGATGACTTAATATTTTTCACTACCTTTGGAGAACAGATGAACATTATTCACCATGAATGGATCTATACTGT  3281

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 3282  GTGGTCATGAGTTGTGTATACTTCCATAACACTGTATTTTTCTTCTGTCAGTACCCTTAGGATACACTTTAAAA  3355

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 3356  CACCTTAAGGTCTGATGTTATGGCAACAAACTACTTTTTCAAACCTAAATAGGAACCATGTAATTTCTCAAAAG  3429

Query 2113  --------------------------------------------------------------------------  2112
                                                                                      
Sbjct 3430  TGATTGAACAGTTTGCCCACACTTAGTTTGTTGGTCTTATGTAAAACATTGGCTCAAAATAAAGTACACACTGA  3503

Query 2113  ----  2112
                
Sbjct 3504  TTTA  3507