Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08936
- Subject:
- NR_144484.2
- Aligned Length:
- 5785
- Identities:
- 1007
- Gaps:
- 4775
Alignment
Query 1 ------------------------------------ATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTC 38
||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCTGGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTC 74
Query 39 TGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGC 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGGGCTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGC 148
Query 113 CGACACCTGAAGGAAAATTGGGCCGATTTCCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACT 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 149 CGACACCTGAAGGAAAATTGGGCCGATTTCCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACT 222
Query 187 CCTGGGGCTCGTTTCCAGAGGTCTCACCTTGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGGGGCTCGTTTCCAGAGGTCTCACCTTGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGG 296
Query 261 AGGAGGAGGTAGTGGAAGAGGTCTGATGGGGCAGATTATTCCGATCTACGGTTTTGGGATTTTTTTATATATAC 334
||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 297 AGGAGGAGGTAGTGGAAGAGGTCTGATGGGGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATAC 370
Query 335 TGTACATTCTATTTAAGCTCTCAAAGGGGAAAACAACTGCAGAGGATGGGAAATGCTATACTGCCATGCCTGGA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGTACATTCTATTTAAGCTCTCAAAGGGGAAAACAACTGCAGAGGATGGGAAATGCTATACTGCCATGCCTGGA 444
Query 409 AACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCAACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCAT 482
|||||||||||||||||||
Sbjct 445 AACACCCACAGGAAAATTA------------------------------------------------------- 463
Query 483 GGAAAAATTATTCAACAGAGTGGGACCTAATGGTGAGAGAGCACAGACTGTGACTTCTGACCAAGAGAAACGGT 556
|||||||||||||||||||||||||||||||||||
Sbjct 464 ---------------------------------------AGCACAGACTGTGACTTCTGACCAAGAGAAACGGT 498
Query 557 TGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAA 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAGAAGGAAAATTCATTGACAGATTTTCTCCAGAGAAA 572
Query 631 GAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTC 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 GAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGTTACCCTGAAGAGACTTACCCAATTTATGACCTTTC 646
Query 705 AGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGATTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAA 720
Query 779 TAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAGATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCC 794
Query 853 AGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCAAAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGA 868
Query 927 CGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAGTGCAGATAGCTACCCTGAGCAAGAGGAAACCACCA 942
Query 1001 AAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCACAGATAAAGCATATACAGGCAGCATG 1074
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 943 AAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGGGCATCAGCACCGATAAAGCATATACAGGCAGCATG 1016
Query 1075 CTGAGGAAGCGTAACCCCCAGGGTTTAGAG-------------------------------------------- 1104
||||||||||||||||||||||||||||||
Sbjct 1017 CTGAGGAAGCGTAACCCCCAGGGTTTAGAGTGAAAACAGCCAGTCTGAAGTATCCATTACTCAAGTCCCAAGGT 1090
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1091 GACCTCTCTCTCCTCAGATTTCCTTCTTGGCCCTGTGCCCTGCACTTTCTTCACTGTGTTCAAGTGTCATAGCT 1164
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1165 ATCAGGCCACTATCATGGATATCATGTATCCTTCCTGGTGCTCACACACCTGTCACCTTGTAAAACACGGACAT 1238
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1239 TAGTGTGAACACAGGACAGCTTCGCTCTTTCTCTTCCTGCCTTTCCTCTATCAGAGAAGTTGATCCATTAAGTA 1312
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1313 ATTATGTTTGGTCTATTGTAATTACAGATGGGACCACTCAGGGGCAAAGGTCTGACTCTTCCTGGTAGGTGTAA 1386
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1387 CAGATAGTTCACCTGTGAACGAACATCAGCTTACAGATGATGAGGACTTAAGGTTGCAAGAATGAAGATTTCAG 1460
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1461 ACTCCAAGATCCCTTATTCTTTGGGCCTTGAGCAGGTTAGTAGTCCCCTGGTGAGAAGAGAACATTTTGTTTGT 1534
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1535 GGGGCTAATGGGCCCAGAGGAGGGTAAGACTCTGCTGTCTAAGCTGAAGCCTCTTCCTCGCAGCGAGGGTCTTC 1608
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1609 CTAGGAACATTGATGCTGCCTCAGACATCCTCTTTTCTCCAGAGTAGGGAAGACTCCCACTGATCTGAGAATGA 1682
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1683 GCCCAGAGGCTTGTTTGGGGACTGTTTTACTCTGATACTACCTGGATATCTAGCTTCCTTTACCCCTGTTCTGC 1756
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1757 TTAACAGAACTGCCAAGCCCAGAAGTACCTTTGCACTCCTGGTTTTCAGTGGACAGAGGAAGCTTTAGATAGAG 1830
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1831 ACTTTAGACCCTGCCCTGCAGAGTCAAGACTTGAGGCCATTGAAGCTGCAGGAAGCCCTGCCCAGGGATGGTCC 1904
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1905 TGCCATGAGGAGGCTGCAACCCTATAAGAGGGCTCAAGATTGTGAATTCTGCTCCTGCCATGAGGAGCTCAGAA 1978
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 1979 GGCCAGGAAGCCAGCAATAGGGGAGAGAATCTGTGTGCTTATGGACAGTCCTTACCTAAAGCTGTTTCTGAATG 2052
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2053 TTGCACCCTTTGAGAAATTTCTTCTCAGAACCATAAATTGAAACAAATGAGGACTGATCTTGTATACAAAGTGC 2126
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2127 CAACTCAAGAGGGAAGTTGGAGTATGTCTGTTGCAGAGAACCAATATAGCAGTGCCCAGGGGTAGAGACCATGT 2200
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2201 GTTCCATACTCGGATATTTGGGTCTTTTTGAGAGAGCTGGGGAAAGTAGCAGCAACTAGATTAAGACTGGGAGG 2274
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2275 ATTTTGACCAAACTAAAGGCCTTTTCTCCTTACTGCATCTGACGTGTGTCTTCTTGAGACAAGATAGCACCCAT 2348
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2349 GAATTACATCATGAGGTATGTGTGAATTCAGTTTACATGTAAGACCTGAGAGTTCGAAGAGGGCACATTCCCAA 2422
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2423 AGACATTCCCAGTCATGAAATGTAGAAGACTGGAAAATTAAGACATTATGTAAAGGTAGATATGGCTTTTAGAG 2496
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2497 TTACATTATGCTTGGCATGAATAAGGTGCCAGGAAAACAGTTTAAAATTATACATCAGCATACAGACTGCTGTT 2570
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2571 AGAAGGTATGGGATCATATTAAGATAATCTGTCAGCTACTACTAGGCATTTATTGTTAATTGAGTTACAGAAAG 2644
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2645 TCATTCAAGACTGAGTTTATAGAAAGCATATTGCATCTATCTCTGTGTAGAACATTTGATTCACATTGTGAAGA 2718
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2719 ATGCAGTTTAAAATATACTGAATGCAATCTAGATGTATTGTACACGAAAGGTGAAAAATAACAGGTGCTCTTTA 2792
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2793 CTGTTTAGATAAATTGTTTTCTGTGTTATTTCCCTTCGTTCACTGTGAGGGGTTGATTCATGAGGAGAGCCCTG 2866
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2867 GGTTCCTGGCTCAGGTTTACTTTTGGCCTTAGGATAGGATTCCCTTATTAGAGATAAATACTGCTGTTCTCTTC 2940
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2941 TAGCTCATTCATTCATTTAGCAGTCAATTGCTCAGTGCCAGGTGCTAGGAACAGAGGCTCAATCTCTACCCTCA 3014
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3015 GAAAACTCAGTGTGACGAGAGAGAGCCTGACAGATAAAATGAACTATGACCCTGTAAGAGGGCTCAGGATCGTG 3088
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3089 AATCCTGCAGGCAGAGAAACATGAGCCATAATCTGTCCCTGCATTTTCTAGCTGTGGAATCTTGGGTCAGCTCC 3162
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3163 TTAACTGGTCTGAGCTTTGGCTTCAGGGTAGTAAAGGGAGGGGTATTAAAGGTCCTGGTTAAATGAAATCATCA 3236
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3237 GTGTGTGTAAAACAGCATTGGTTCTAGCTCATACATGATAACCACTCATTAAGTGGTAATTATGTTTTTATTAT 3310
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3311 AAGGGCTATGCTGTAATTCAGACATGGGCCCAAAACTACAGGAAAGATAAATTGTTTTTGCTAAAGTATTGCCA 3384
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3385 AGAAACTTCACAGTTTCTTGGGAGGTGGGCCTTGAGGCATGCAAAGAACTTCTTCAGGTAGGCAAAGAAGAGAG 3458
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3459 GACACTCTTGGCAGAAAGAGTTGTTGAAAAAAGCAGTAGGGTGTGAAAATACATGGATGTTCAAGTATTTTGGT 3532
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3533 GAGGCTGTTATGTAAAGTGTTGTTGGTCTTTGGGGAAAATTGGCTTATGGAAATTCCTGCCAGAAGTACTAAGC 3606
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3607 CCTTATGGTGGTTCTTCCTGCCCTAGCTCTTGGTTGGTTTATATATAAGGAATATATTTGTGTATTTATATATC 3680
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3681 AGACATTTGGATGTACCTTTCAGTTATTTAGGATTTAGAAAATTCTTTTTGGATTTTCCAGAATTATTTTATCC 3754
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3755 TTCGGGGATGACAGTTATATGTGTATATACAACCCAGGATGACAAAATCATGGGTCCGGTTTTTGTTGCCAGGG 3828
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3829 CTGCTGTCTCTTTTCTTGCGGTCTTCATTTCTCACGAGGGTGCTGGGAACTTGATCAGTCCCCTGGCCTTTTGG 3902
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3903 CACTGTGGCAGAGTACACAAGTCATACCTTTATGGACAGTTAGCTCACAAAACAACTGCATAATCTGGGATCAC 3976
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3977 TCTTGGTAAATCAGGTGGGTGGTGCAGCCAGGAGATCCCCTTTCCTGGTCACAACAGGAGCACAAAGAAACCAT 4050
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4051 TATCTCCATGACTAGCTCCAGAAGCTGGGCCCAGGGAGTCGTGATGAGGAGTGGAGGTGTATTTGGCCTGTAGA 4124
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4125 ATCAACGGCCTTTGAGAACCATACAATGCACCTTATATGGCTTGGGTGATCAAATAACTTAAGGTCCAAATTCA 4198
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4199 AACACTTTGGAAAAAGGGAGCTTTAATATAATTATGCCAAGGTGATAGGCATAAACTAAGACTGTCCTGGACGT 4272
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4273 AGGGTCACCCCTGTCTATAGCCATTTAAGATTTTTGAACCTGATGACTAAACAAACAAAACCCTCTTTCCTTTT 4346
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4347 TAGAATATCCTGTATGCGCTATTTCCCACCAGAGGCAGAGGCCACAGGAGATAGGCCATGGTTCAGGTAGGAAA 4420
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4421 TGCTCTTGGTCACATCAGAACTCTAGATCTGGGGGAATAAACAAACCCGAATTATTACCACACTCTCAAAGTTC 4494
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4495 TCTTCAATCTGGACTATTTGTATTCCAAAGAAAAATTTAGTGCTTTAGCTATTCAGCAATATTGAGAAAAAACA 4568
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4569 TGAACACATTTATGACTTTGCCTTGACCATTGACTTTTCTAAAATGTGCTTCCTTTTCCTTTATTTCCCTTTTT 4642
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4643 TTATACAAAGAAAATAGCCCAAATTTCTCCTCTTAGGTCATTCCTTAACCTCTCAGAGAACCAGTTTCCCCATG 4716
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4717 AATTGGGAATAATGCTCTATTTACAGGGCTGTTTGGATTAAATAAGATGCTGTTTATAAAGTGTCTGTGCCAGG 4790
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4791 GCAAAGCATGTGGTAGGTGCTTGGTGACAGCATGATCCCTGTCACCACTCTGTCAAGTCCAGTGTTGCTGAGAT 4864
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4865 GTCACACCTGACACCCTCTAAGGCTACCCTGATTGCCAGGAGTGGCCCAGGGCCCTTCTGCAGTCTCCGGGTGC 4938
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4939 CTTTAGTTATAACCTCTTGTCTGGGTCAGACCATTAGCTTTCATGTCTGCTTCTAGCTACAACTGTAGCCTCCC 5012
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5013 TTCCTTTTGCCTTCAAATCTGCCACAGCTGCCCGGCAACAAAAAAAGATTCCTAAGCATCTCGAGGTCCTGTTT 5086
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5087 AAATGGGTTAGGGTCCAAGCAAGCCCTGAGACATCAAGTGGTTGGGTCTTTTATACCTTTTTCATCTCTACAGC 5160
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5161 CCTGTTCTCTTCCTAAGGCCAGGCCCACAGGGGATACTGAGGAACCACCAGCCCCTTCAGGCGGCACAGCAGAC 5234
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5235 CCTGAAGAGAACTGCTCTAACTTAAGTACCTTCTGACTTCACCATTTTTCCAGCCTCTGGGTGTGGTTCTGATG 5308
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5309 AACCTTAAACTTGAAAGGCACAGGCCAGAGGAAGGACAGTGTTGACCCACATGTCATTGGTGAGGTTATGATCT 5382
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5383 CTTTGCTATTATCACCTACTTACCCACCTGAGGCTCCTAGGAAACAATGAATGAAAGGTATAGAAAAAAATTAG 5456
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5457 GAAGTAAACAGGGCTTTTTTCCCCTTTATGAAAAAAGTACACAGAAGTGTTGAAACGATTCAAGTTTAATTTGT 5530
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5531 TGATATATGTGTGTACTTAGACAAACACTAAATTCTACAACATACATAATGTCAACATGGGAAAATACCAAGTT 5604
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5605 TGTCATTGCACATACCAATAAATAAATACATTTGCTCCAGAATACCAAAGTTTATTCAAAAAGTCAATAAAAGC 5678
Query 1105 ------------- 1104
Sbjct 5679 ACAGTTTTGCAAA 5691
