Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08936
- Subject:
- XR_930904.3
- Aligned Length:
- 5542
- Identities:
- 1100
- Gaps:
- 4438
Alignment
Query 1 --------------------------------ATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCGTCTGCACCTGCGACCACCGTGAGCAGTCATGGCGTACTCCACAGTGCAGAGAGTCGCTCTGGCTTCTGGG 74
Query 43 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTTGTCCTGGCTCTGTCGCTGCTGCTGCCCAAGGCCTTCCTGTCCCGCGGGAAGCGGCAGGAGCCGCCGCCGAC 148
Query 117 ACCTG-------------------------------------------------AAGGAAAATTGGGCCGATTT 141
||||| ||||||||||||||||||||
Sbjct 149 ACCTGAAGAAAACTAAGAGTGAGAACTGACAAAAAGCCATTGGATTTGACGGTTAAGGAAAATTGGGCCGATTT 222
Query 142 CCACCTATGATGCATCATCACCAGGCACACTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 215
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCACCTATGATGCATCATCACCAGGCACCCTCAGATGGCCAGACTCCTGGGGCTCGTTTCCAGAGGTCTCACCT 296
Query 216 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCCGAGGCATTTGCAAAGGCCAAAGGATCAGGTGGAGGTGCTGGAGGAGGAGGTAGTGGAAGAGGTCTGATGG 370
Query 290 GGCAGATTATTCCGATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTA-------------- 349
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCAGATTATTCCAATCTACGGTTTTGGGATTTTTTTATATATACTGTACATTCTATTTAAGGTAAGTAGAATC 444
Query 350 -------------------------------------------------------------------------- 349
Sbjct 445 ATCCTAATCATATTACATCAATGAAAATCTAATATGGCAATAAAAATCATTGTCTACATTAAAACTTCTTATAG 518
Query 350 -------------------------------------------------------------------------- 349
Sbjct 519 TTCATAAAATTATTTCAAATCCATCATCTCTTTAAATCCTGCCTCCTCTTCATGAGGTACTTAGGATAGCCATT 592
Query 350 -------------------------------------------------------------------------- 349
Sbjct 593 ATTTCAGTTTCACATAAGAAATGTTTACTCAATGTTTAAGTGTTTTGCCCCAAAATTCACAACTAACAAGGCAG 666
Query 350 -------------------------------------------------------------------------- 349
Sbjct 667 AACTAGGACTTGAACATGGATCTTTTGGTTCTTAATCCAGTGAGTGATACAATTCAATGCACTCCCCTGCCAAA 740
Query 350 -------------------------------------------------------------------------- 349
Sbjct 741 AAAAAAAAAAAAAAAAAAAAAATTAACATCTTTACAGGCCGAAAAGGAATAAAGATTTTCTAAGAAGAGCTTTT 814
Query 350 -------------------------------------------------------------------------- 349
Sbjct 815 ATTATTGGGATTGGCACAGTGATTTCCAAATAGCCATTGTAAGGCCAAATAATGACACCACTTTATCCTGCTTG 888
Query 350 -------------------------------------------------------------------------- 349
Sbjct 889 TTTCTCCACAGGAATTTGAGATGCTGTTTTTAATATTATCTCCAATAATTCTCCTGAGACAGAACTGTCCCTCC 962
Query 350 -------------------------------------------------------------------------- 349
Sbjct 963 TGAAATTAAGCCTGATATTTCCTAGCTCTGGGGAGACATGGGTGTAGGTTCTTTAAAGCAGACCCCCAGTTGAG 1036
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1037 TTCCACCTCCAGGCAGGCCTTTGCAGGCCCCTGGCCCCTGTACTGTGAATTAGAGGCAGAAGACTCACTTTGCC 1110
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1111 CTCCTGTCTAGAGTAAGCTTAAATAAGATGAGTTCTTTCTCGCCCAGGAATTCTGCAGGCAGTCTGAGTTGAGT 1184
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1185 CTGTAAGAATGCCCATAGGGTGCCACACATCCCTTTTAGATGAGCATGAGCAAGGAAGATGACCTGTAGGGAGA 1258
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1259 TTTTTTTTCCCTTGTGTTAGAAATGCTTGTTCTCTGGTGCCATAAAGAAGCAGCACTTGGACGTACATTTAATT 1332
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1333 TCCTCAGCAAGGCCATTTTTACTTTCTGCAGAAAGGGTACACTCACCAGCGGTTTTGCCGTGAGAGTACACCGA 1406
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1407 ACAAAGGAGACAGGGTCATTTATAACCTGACGCATCCACCTTACTGCTGTGTCCGGTTTCCATTGGCTGGAACG 1480
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1481 GGACCTCACATTCTGTATTTGTGCTGATTGGCTAGCGACTTAGAACTTTTTAAAAGAGGCAAAGGCAGAGGAGA 1554
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1555 ACAAAGGAAGGAGGAACTAACTTGTGGAATGCTGAGAAAGGTAAAAACACCTTCATATAAGGAAGAGGAACAGG 1628
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1629 CTATGACCTCATGCTTGCTTTGACAAGTATAAGCATGCCAGGGCAAATATTTAGGCTAAACTGTGGGAGCTAAG 1702
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1703 AACAGTTGATTTCTTTATTATGGCTAGCAGATATCTAAGCATGTTAGCACAGGTTCTTGAATAAATTTTGCTTC 1776
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1777 TAAGAGAAGTTACTATTCCTAATTATATGGGGAGTAAAGTCTCTTTGAAGAGGAATCTCTACTTTACTTTTTAC 1850
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1851 ACTTGTGCTTTGATAATTTTTTACTTGGAAACCTCATCTTTTGGCGTTTTTTTTTTTGAGCTATTTCTCTAGTG 1924
Query 350 -------------------------------------------------------------------------- 349
Sbjct 1925 TTGCTATTTGATTTAATTTCTGACCTTCATTTTTGTTTCCCAACCTTTTTTTTTTGTTTGATATGAGGGGTTCC 1998
Query 350 ---------------------------------------------------AGCTCTCAAAGGGGAAAACAACT 372
|||||||||||||||||||||||
Sbjct 1999 GTGACTGAGGTTCTGAGCTGCTGTTGATGTGCTATACCTCCTTCAATTCTCAGCTCTCAAAGGGGAAAACAACT 2072
Query 373 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GCAGAGGATGGGAAATGCTATACTGCCATGCCTGGAAACACCCACAGGAAAATTACCAGTTTTGAGCTTGCTCA 2146
Query 447 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTATTCAACAGAGTGGGACCTAATGGTGAG- 519
||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2147 ACTGCAAGAAAAACTGAAGGAGACAGAAGCAGCCATGGAAAAATTAATCAACAGAGTGGGACCTAATGGTGAGA 2220
Query 520 ------------------------------------------------------------------------AG 521
||
Sbjct 2221 GATCAGAATGCCCTGCGTACAGTCTGGAAAAGTAACATGTGCCGCCTGAAGAGACAAGAGTTTGTGATAAGCAG 2294
Query 522 AGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AGCACAGACTGTGACTTCTGACCAAGAGAAACGGTTGCTACATCAGCTCCGAGAAATCACCAGGGTCATGAAAG 2368
Query 596 AAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAGGAAAATTCATTGACAGATTTTCTCCAGAGAAAGAAGCTGAGGAGGCCCCTTACATGGAGGACTGGGAAGGT 2442
Query 670 TACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TACCCTGAAGAGACTTACCCAATTTATGACCTTTCAGACTGTATCAAGCGTAGGCAAGAAACAATCTTGGTGGA 2516
Query 744 TTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TTACCCTGACCCAAAAGAACTTTCTGCTGAAGAAATAGCTGAAAGAATGGGAATGATAGAAGAGGAAGAATCAG 2590
Query 818 ATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 ATCATTTGGGTTGGGAAAGTCTGCCCACTGACCCCAGAGCCCAGGAAGATAATTCTGTTACCTCGTGTGATCCA 2664
Query 892 AAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 AAGCCAGAAACATGTTCCTGCTGTTTTCATGAAGACGAGGATCCTGCTGTCTTGGCAGAGAATGCTGGATTCAG 2738
Query 966 TGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 TGCAGATAGCTACCCTGAGCAAGAGGAAACCACCAAAGAAGAGTGGTCCCAAGACTTTAAAGATGAAGGGTTGG 2812
Query 1040 GCATCAGCACAGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAG--------- 1104
||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 GCATCAGCACCGATAAAGCATATACAGGCAGCATGCTGAGGAAGCGTAACCCCCAGGGTTTAGAGTGAAAACAG 2886
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2887 CCAGTCTGAAGTATCCATTACTCAAGTCCCAAGATGGGACCACTCAGGGGCAAAGGTCTGACTCTTCCTGGTAG 2960
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 2961 GTGTAACAGATAGTTCACCTGTGAACGAACATCAGCTTACAGATGATGAGGACTTAAGGTTGCAAGAATGAAGA 3034
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3035 TTTCAGACTCCAAGATCCCTTATTCTTTGGGCCTTGAGCAGAATATCCTGTATGCGCTATTTCCCACCAGAGGC 3108
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3109 AGAGGCCACAGGAGATAGGCCATGGTTCAGGTAGGAAATGCTCTTGGTCACATCAGAACTCTAGATCTGGGGGA 3182
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3183 ATAAACAAACCCGAATTATTACCACACTCTCAAAGTTCTCTTCAATCTGGACTATTTGTATTCCAAAGAAAAAT 3256
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3257 TTAGTGCTTTAGCTATTCAGCAATATTGAGAAAAAACATGAACACATTTATGACTTTGCCTTGACCATTGACTT 3330
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3331 TTCTAAAATGTGCTTCCTTTTCCTTTATTTCCCTTTTTTTATACAAAGAAAATAGCCCAAATTTCTCCTCTTAG 3404
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3405 GTCATTCCTTAACCTCTCAGAGAACCAGTTTCCCCATGAATTGGGAATAATGCTCTATTTACAGGGCTGTTTGG 3478
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3479 ATTAAATAAGATGCTGTTTATAAAGTGTCTGTGCCAGGGCAAAGCATGTGGTAGGTGCTTGGTGACAGCATGAT 3552
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3553 CCCTGTCACCACTCTGTCAAGTCCAGTGTTGCTGAGATGTCACACCTGACACCCTCTAAGGCTACCCTGATTGC 3626
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3627 CAGGAGTGGCCCAGGGCCCTTCTGCAGTCTCCGGGTGCCTTTAGTTATAACCTCTTGTCTGGGTCAGACCATTA 3700
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3701 GCTTTCATGTCTGCTTCTAGCTACAACTGTAGCCTCCCTTCCTTTTGCCTTCAAATCTGCCACAGCTGCCCGGC 3774
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3775 AACAAAAAAAGATTCCTAAGCATCTCGAGGTCCTGTTTAAATGGGTTAGGGTCCAAGCAAGCCCTGAGACATCA 3848
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3849 AGTGGTTGGGTCTTTTATACCTTTTTCATCTCTACAGCCCTGTTCTCTTCCTAAGGCCAGGCCCACAGGGGATA 3922
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3923 CTGAGGAACCACCAGCCCCTTCAGGCGGCACAGCAGACCCTGAAGAGAACTGCTCTAACTTAAGTACCTTCTGA 3996
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 3997 CTTCACCATTTTTCCAGCCTCTGGGTGTGGTTCTGATGAACCTTAAACTTGAAAGGCACAGGCCAGAGGAAGGA 4070
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4071 CAGTGTTGACCCACATGTCATTGGTGAGGTTATGATCTCTTTGCTATTATCACCTACTTACCCACCTGAGGCTC 4144
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4145 CTAGGAAACAATGAATGAAAGGTATAGAAAAAAATTAGGAAGTAAACAGGGCTTTTTTCCCCTTTATGAAAAAA 4218
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4219 GTACACAGAAGTGTTGAAACGATTCAAGTTTAATTTGTTGATATATGTGTGTACTTAGACAAACACTAAATTCT 4292
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4293 ACAACATACATAATGTCAACATGGGAAAATACCAAGTTTGTCATTGCACATACCAATAAATAAATACATTTGCT 4366
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4367 CCAGAATACCAAAGTTTATTCAAAAAGTCAATAAAAGCACAGTTTTGCAAATTTGTCTAAAACGCCAGATAATC 4440
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4441 TTGAACAAAAATAAAATGTCTGACCACTCCAAAATAGGAAAAGACAATCTTGTGCAAATAGACATACACAGTCT 4514
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4515 AGGCATTGTGAAAACTGGCTGTGTTCCCAGCAAGAGATACTGCACCCTCCTGACCGAGCAGTCAGGCTTCCCTT 4588
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4589 TCCTAGCCATCCTAAGTTGCGTTCTAGGAAACTCTGGATCTCAGCCTCATCTCCAGCTTTGCCTGGACCTTGCT 4662
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4663 AGGGGGAGGGAGGGACAGGAGCACAGAGGAGGAGAGGAGAGGGATGTGATGTCTTTCTTAGGAAAGAAAAAAAG 4736
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4737 GCACAGTGATGAGCTATAAAGGTAGTGATGAGAGCTATAAAGGTAGTGATGAAAGCAAGGAATAATTTTCATTC 4810
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4811 ACCCCAAATCCTACGGCAAGCTTTGACAATGTAACATCTTTATCTTGTGGTTAGGAAAATGGACCTAGAGAGAT 4884
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4885 TATGTGGTTTGCTCAAAATCACATAGCTACTAAGTGCAGTAGTGCTTTCTATAAGACCAACTTGCCTTTCCACT 4958
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 4959 TGGTTGGAAAATTTAAAAACCAAACCTGTCGTAATCTATCTGTTCTGCCCCTCCCGCCTGTATCATGAGATGAC 5032
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5033 TGAAAATTCCAGGTGGCCATAAACTCAAACAAGAGCCTAGCCCTTGGCTTATTACCGGTGGCTACTACAAACCT 5106
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5107 ACAGACCAGAGCCCAGGGTAGTATAGAGTCCCAACTCTGGGCCCTGACTGCAGGTCATTCAGGTCCCAGTCACA 5180
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5181 GTGAAAGCAGACTCATTCAGCTATCTGGAGAAGTGTAATCTGAGGGCCACTTGGCATCCTGAGTTAACACAGGG 5254
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5255 ATGCCGCAGCTGGGGTAAGGAATTAGAGAAGGGAAGGCCAGTGTTACTGCAGTAAGAGAAAACCAGGAAGTCCA 5328
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5329 TCTAGGAGATGAAATTTGTGCTTGCATAACAGAGCCATGGAAATGGCTATCCCAGCATCTCCCCTCACTGCAGA 5402
Query 1105 -------------------------------------------------------------------------- 1104
Sbjct 5403 CTCCATTGTAAGCAAAGCATGGACCTTTTTCTTTGAAACCAACCCTGTCACTTGTTAAATTTAGAATTACCTCT 5476
Query 1105 ------------------------------------------------------------------ 1104
Sbjct 5477 AAATGCTAAGTTTATTTAAGAGGTAAATGTCCTGCTATTTTCAGAATGGAGAAAAAAAAAAAAAAA 5542