Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09020
- Subject:
- XR_001779949.1
- Aligned Length:
- 3317
- Identities:
- 1589
- Gaps:
- 1517
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGATGGGGACTGCGTTGTTGAGACAGGGTTTCTCTGTGTAACTCTGGCTGTCCTGGAACTCACTCCGTTGACTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCTGTCCTCAGCGATATTGCCTGCCTATGCCTCCCTGATGCTGGGATTAAATGCTTGTCCCACCACCACTTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTACATGGCCTGTTTTAATGTCTCCCTTGTGTGGGGGAAAGAAACAACAATAACAACAACAAATAAAAATCCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGTGAGATTTTGATTCAAAGGGGGAAAAGGCATGTGAAATGAAAGTTTAAAAGAGGAAGTTGTGTCGCAAAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTTAAAATAAGGCGCATTCCCGGGGTGGGAAGTAGAAAGTCCAAAAGTAACTTCCAAGTGCTCCGGGCTGGGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCACCTACGGTTAGGAATCGTACTTTCCCGAATGCTATACAAGGAAAGCAAGCCCAGGTGAGAGCGAGCAAGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGCAGCGGCTTAAGGTCGTCGGTCCAGGGCAGCGGCGGGTCACGTGACCTAACAACATGGCCGCCCGCGGAGAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGCCGCCGGGCGGGGCAGGATTCGGAGCCGGAGCCGGAGCGGGAGCCGGAGTCCGAGCCGGGGCCGGAGCCTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCCCAAGCAGGCCTAGAGTCCGGGGAAGCGTTCGAGATCGTGGACCGGAGCCAGCTGCCGAGTCCCGGCGAGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCGGAGTGCGTCGCGGCCTCGAGTGGCCGACAGCTGGTCGGCGCCCATCCTGACGCTGGCGCGCAGAGCCACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGGAACCTGTCGGCGAGCTGCGGCAGCGCGCTGCGCGCGGCCGCGGGGCTGGGAGACGGCGGCGGCGGCGGGGA 814
Query 1 ----------------------ATGATGGAGGAGCGTGCCAACCTGATGCACATGATGAAACTCAGCATCAAGG 52
|||||||||||||||||||||||.|||||||||||||||||||||||.||||
Sbjct 815 GCGCGCAGCTTCCAAAGGCCAGATGATGGAGGAGCGTGCCAACCTAATGCACATGATGAAACTCAGCATTAAGG 888
Query 53 TGTTGCTCCAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCGGACCATGCCCCCTTGCAGCAGTTCTTTGTA 126
|.||.||||||||.||.||.||||||||.|||||.||||||||.|||.||||||||||||||||||||||||||
Sbjct 889 TCTTACTCCAGTCTGCCCTTAGCCTGGGACGCAGTCTGGATGCAGACTATGCCCCCTTGCAGCAGTTCTTTGTA 962
Query 127 GTGATGGAGCACTGCCTCAAACATGGGCTGAAAGTTAAGAAGAGTTTTATTGGCCAAAATAAATCATTCTTTGG 200
|||||||||||.|||||||||||||||||||||||.|||||||||||.||||||||||||||.||.||||||||
Sbjct 963 GTGATGGAGCATTGCCTCAAACATGGGCTGAAAGTCAAGAAGAGTTTCATTGGCCAAAATAAGTCTTTCTTTGG 1036
Query 201 TCCTTTGGAGCTGGTGGAGAAACTTTGTCCAGAAGCATCAGATATAGCGACTAGTGTCAGAAATCTTCCAGAAT 274
||||||||||||||||||.|||||||||||.|||||||||||||||||.||.||||||||.||||||||||||.
Sbjct 1037 TCCTTTGGAGCTGGTGGAAAAACTTTGTCCTGAAGCATCAGATATAGCTACCAGTGTCAGGAATCTTCCAGAAC 1110
Query 275 TAAAGACAGCTGTGGGAAGAGGCCGAGCGTGGCTTTATCTTGCACTCATGCAAAAGAAACTGGCAGATTATCTG 348
||||||||||.||||||||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1111 TAAAGACAGCCGTGGGAAGAGGCAGAGCGTGGCTTTATCTTGCTCTCATGCAAAAGAAACTGGCAGATTATCTG 1184
Query 349 AAAGTGCTTATAGACAATAAACATCTCTTAAGCGAGTTCTATGAGCCTGAGGCTTTAATGATGGAGGAAGAAGG 422
|||||.||.||||||||.||.||.|||.||||.||||||||||||||.|||||.||||||||||||||.|||||
Sbjct 1185 AAAGTCCTCATAGACAACAAGCAGCTCCTAAGTGAGTTCTATGAGCCCGAGGCCTTAATGATGGAGGAGGAAGG 1258
Query 423 GATGGTGATTGTTGGTCTGCTGGTGGGACTCAATGTTCTCGATGCCAATCTCTGCTTGAAAGGAGAAGACTTGG 496
.||||||||.||.||||||||||||||||||||.|||||.||||||||.||||||||.||.|||||||||||||
Sbjct 1259 AATGGTGATCGTGGGTCTGCTGGTGGGACTCAACGTTCTGGATGCCAACCTCTGCTTAAAGGGAGAAGACTTGG 1332
Query 497 ATTCTCAGGTTGGAGTAATAGATTTTTCCCTCTACCTTAAGGATGTGCAGGATCTTGATGGTGGCAAGGAGCAT 570
||||||||||.||.||.||.||.||.||.||||..||.|||||.|..|||||||||||..|.||||..||||||
Sbjct 1333 ATTCTCAGGTCGGGGTGATTGACTTCTCTCTCTGTCTGAAGGACGCACAGGATCTTGACAGCGGCAGAGAGCAT 1406
Query 571 GAAAGAATTACTGATGTCCTTGATCAAAAAAATTATGTGGAAGAACTTAACCGGCACTTGAGCTGCACAGTTGG 644
|||||||||||.||||||||||||||.||||||||.|||||.|||||||||||||||.|.||||||||||||||
Sbjct 1407 GAAAGAATTACCGATGTCCTTGATCAGAAAAATTACGTGGAGGAACTTAACCGGCACCTAAGCTGCACAGTTGG 1480
Query 645 GGATCTTCAAACCAAGATAGATGGCTTGGAAAAGACTAACTCAAAGCTTCAAGAAG------------------ 700
|||||||||.||.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1481 GGATCTTCAGACGAAGATAGATGGCTTGGAAAAGACGAACTCAAAGCTTCAAGAAGAGGAAGAGAGAGAGACTG 1554
Query 701 -------------------------------------------------------------------------- 700
Sbjct 1555 AAAGGACAGGAAGAAGGAGGGCTGAGGCTGAGGAAGAAGGCTTGCTGCCCGCTGCCCGGCAATCTCCCTGCTGG 1628
Query 701 ---------------------------------------------------------AGCTTTCAGCTGCAACA 717
|||||||||||||||||
Sbjct 1629 ATACATCTTGTCTCCTGTTAGCAGGAGGGGGGTTGCTCAGCCTTGAGACTTTTCCACAGCTTTCAGCTGCAACA 1702
Query 718 GACCGAATTTGCTCACTTCAAGAAGAACAGCAGCAGTTAAGAGAACAAAATGAATTAATTCGAGAAAGAAGTGA 791
|||||||||||.||.||.|||.|||||||.||||||.|.||||||||.||.|||.||||||||||||||||.||
Sbjct 1703 GACCGAATTTGTTCCCTACAAAAAGAACAACAGCAGCTGAGAGAACAGAACGAAGTAATTCGAGAAAGAAGCGA 1776
Query 792 AAAGAGTGTAGAGATAACAAAACAGGATACCAAAGTTGAGCTGGAGACTTACAAGCAAACTCGGCAAGGTCTGG 865
.|||||.||.|||||||||||||||||.|||||.|||||.|||||||||||.|||||.||.|||||.||.||||
Sbjct 1777 GAAGAGCGTGGAGATAACAAAACAGGACACCAAGGTTGAACTGGAGACTTATAAGCAGACCCGGCAGGGCCTGG 1850
Query 866 ATGAAATGTACAGTGATGTGTGGAAGCAGCTAAAAGAGGAGAAGAAAGTCCGGTTGGAACTGGAAAAAGAACTG 939
|||||||||||||.|||||||||||.|||||.||.|||||||||||||||||..|||||||||||||.||.|||
Sbjct 1851 ATGAAATGTACAGCGATGTGTGGAAACAGCTGAAGGAGGAGAAGAAAGTCCGACTGGAACTGGAAAAGGAGCTG 1924
Query 940 GAGTTACAAATTGGAATGAAAACCGAAATGGAAATTGCAATGAAGTTACTGGAAAAGGACACCCACGAGAAGCA 1013
|||||.||.|||||||||||.||.||.|||||.||.||.||||||||.|||||.|||||||||||.||||||||
Sbjct 1925 GAGTTGCAGATTGGAATGAAGACGGAGATGGAGATCGCCATGAAGTTGCTGGAGAAGGACACCCATGAGAAGCA 1998
Query 1014 GGACACACTAGTTGCCCTCCGCCAGCAGCTGGAAGAAGTCAAAGCGATTAATTTACAGATGTTTCACAAAGCTC 1087
.|||||.||.|||||||||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||.||
Sbjct 1999 AGACACGCTCGTTGCCCTCCGCCAGCAGCTGGAGGAAGTCAAAGCTATTAACTTACAGATGTTTCACAAAGTTC 2072
Query 1088 AGAATGCAGAGAGCAGTTTGCAGCAGAAGAATGAAGCCATCACATCCTTTGAAGGAAAAACCAACCAAGTTATG 1161
|||.|||||||||||||||.|||||||||||||||||||||.||||.||||||||||||||||..||.||.|||
Sbjct 2073 AGAGTGCAGAGAGCAGTTTACAGCAGAAGAATGAAGCCATCGCATCTTTTGAAGGAAAAACCACTCAGGTGATG 2146
Query 1162 TCCAGCATGAAACAAATGGAAGAAAGGTTGCAGCACTCGGAGCGGGCGAGGCAGGGAGCTGAGGAGCGGAGCCA 1235
|||||||||||.||||||||.||||||||.|||||..||||.|||||.|||||||..||.||.|||||.|||||
Sbjct 2147 TCCAGCATGAAGCAAATGGAGGAAAGGTTACAGCAGGCGGAACGGGCCAGGCAGGCGGCAGAAGAGCGAAGCCA 2220
Query 1236 CAAGCTGCAGCAGGAGCTGGGCGGGAGGATCGGCGCCCTGCAGCTGCAGCTCTCCCAGCTGCACGAGCAATGCT 1309
||||.|||||||||||||..||||||||..|.|.|||||||||||.|||||.||||||||||..||.|||||||
Sbjct 2221 CAAGTTGCAGCAGGAGCTCAGCGGGAGGGGCAGTGCCCTGCAGCTCCAGCTGTCCCAGCTGCGGGACCAATGCT 2294
Query 1310 CAAGCCTGGAGAAAGAATTGAAATCAGAAAAAGAGCAAAGACAGGCTCTTCAGCGCGAATTACAGCACGAGAAA 1383
||.|.||.|||||||||.||||.|||||||||||.||||||||.|||||.|||.|.|||.||||||..||||||
Sbjct 2295 CAGGTCTAGAGAAAGAACTGAAGTCAGAAAAAGAACAAAGACAAGCTCTCCAGAGAGAACTACAGCGTGAGAAA 2368
Query 1384 GACACTTCCTCTCTACTCAGGATGGAGCTGCAACAAGTGGAAGGACTGAAAAAGGAGTTGCGGGAGCTTCAGGA 1457
|||||.||.|.|||.|||..||.|||||||||.|||||||||||.|||||.||||||.||||||||||.||.||
Sbjct 2369 GACACCTCTTGTCTGCTCCAGACGGAGCTGCAGCAAGTGGAAGGCCTGAAGAAGGAGCTGCGGGAGCTCCAAGA 2442
Query 1458 CGAGAAGGCAGAGCTGCAGAAGATCTGCGAGGAGCAGGAACAAGCCCTCCAGGAAATGGGCCTGCACCTCAGCC 1531
|||||||||||||.|.|.||||.||||.|||||||||||.||||||||||||||||||||.||.|||||.||||
Sbjct 2443 CGAGAAGGCAGAGTTACGGAAGGTCTGTGAGGAGCAGGAGCAAGCCCTCCAGGAAATGGGACTACACCTTAGCC 2516
Query 1532 AGTCCAAGCTGAAGATGGAAGATATAAAAGAAGTGAACCAGGCACTGAAGGGCCACGCCTGGCTGAAAGATGAC 1605
|||||||.||||||||||||||.|||||.|||||.||..|||||||||||||||||.|.|||.|||||||||||
Sbjct 2517 AGTCCAAACTGAAGATGGAAGACATAAAGGAAGTAAATAAGGCACTGAAGGGCCACACATGGTTGAAAGATGAC 2590
Query 1606 GAAGCGACACACTGTAGGCAGTGTGAGAAGGAGTTCTCCATTTCCCGGAGAAAGCACCACTGCCGGAACTGTGG 1679
||.||.|||||.||||.|||||||||||||||.|||||||||||.|||||.||||||||||||||.||||||||
Sbjct 2591 GAGGCAACACATTGTAAGCAGTGTGAGAAGGACTTCTCCATTTCTCGGAGGAAGCACCACTGCCGAAACTGTGG 2664
Query 1680 CCACATCTTCTGCAACACCTGCTCCAGCAACGAGCTGGCCCTGCCCTCCTACCCCAAGCCGGTGCGAGTGTGCG 1753
||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.|||||.|||||.|
Sbjct 2665 CCACATTTTCTGCAACACCTGCTCTAGCAACGAGCTGGCCCTGCCCTCCTACCCTAAGCCAGTGCGTGTGTGTG 2738
Query 1754 ACAGCTGCCACACCCTGCTCCTGCAGCGCTGCTCCTCCACGGCCTCC--------------------------- 1800
||||||||||.||||||||.||||||||||||||||||||.||||||
Sbjct 2739 ACAGCTGCCATACCCTGCTACTGCAGCGCTGCTCCTCCACTGCCTCCTGAAGCCATCAGCCCCACCCACCAGCA 2812
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2813 GGGACCTTGACCTGTTGACCTCCATCCTCAGAGTGGAGGAAAGCCTCAGGTACAGTGCCAAACTTGGGATCTCC 2886
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2887 AGAGACCTGTAGGGACCCAAGAGAATCAAAGGAAAGAATGAAACCTTCACCAGGCTGTCAGCCTCGGAAGAGAA 2960
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 2961 TGCCAAGTGGCAGCTGAGCACTTTTCCATGGTCTCTATGGAGTCATCTCCTCTAGACAGACACTTCTGTGTCCT 3034
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 3035 CAGTTAAATCCTGGCTTTGGTACAGGTGCAACTTCATGACTTTGCTACTGTCACCTTCACTTTTCAAAGGGTTA 3108
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 3109 ACCTGTTGTGCAGCAGTTGCACTAGAGAATCCTTTCTCTTTCCTACCCACGTCCCACAGAAACCTTGATTTCTG 3182
Query 1801 -------------------------------------------------------------------------- 1800
Sbjct 3183 CTGTGCTTTGAACCTTGTGGGTCTGTCAGTGTGCCTTGTCTGCTTCGGCATCCAGCATTTGCCATCATGCTCCT 3256
Query 1801 ------------------------------------------------------------- 1800
Sbjct 3257 GCCAACACCTACTGTCAGCCCTGCAATAAAATCCTTTATTTTTCACTCTTGTACAGACAAA 3317
