Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09020
Subject:
XR_001779949.1
Aligned Length:
3317
Identities:
1589
Gaps:
1517

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGATGGGGACTGCGTTGTTGAGACAGGGTTTCTCTGTGTAACTCTGGCTGTCCTGGAACTCACTCCGTTGACTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCTGTCCTCAGCGATATTGCCTGCCTATGCCTCCCTGATGCTGGGATTAAATGCTTGTCCCACCACCACTTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTACATGGCCTGTTTTAATGTCTCCCTTGTGTGGGGGAAAGAAACAACAATAACAACAACAAATAAAAATCCAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGTGAGATTTTGATTCAAAGGGGGAAAAGGCATGTGAAATGAAAGTTTAAAAGAGGAAGTTGTGTCGCAAAAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTTAAAATAAGGCGCATTCCCGGGGTGGGAAGTAGAAAGTCCAAAAGTAACTTCCAAGTGCTCCGGGCTGGGAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCACCTACGGTTAGGAATCGTACTTTCCCGAATGCTATACAAGGAAAGCAAGCCCAGGTGAGAGCGAGCAAGGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGCAGCGGCTTAAGGTCGTCGGTCCAGGGCAGCGGCGGGTCACGTGACCTAACAACATGGCCGCCCGCGGAGAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGCCGCCGGGCGGGGCAGGATTCGGAGCCGGAGCCGGAGCGGGAGCCGGAGTCCGAGCCGGGGCCGGAGCCTGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCCCAAGCAGGCCTAGAGTCCGGGGAAGCGTTCGAGATCGTGGACCGGAGCCAGCTGCCGAGTCCCGGCGAGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCGGAGTGCGTCGCGGCCTCGAGTGGCCGACAGCTGGTCGGCGCCCATCCTGACGCTGGCGCGCAGAGCCACC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGGAACCTGTCGGCGAGCTGCGGCAGCGCGCTGCGCGCGGCCGCGGGGCTGGGAGACGGCGGCGGCGGCGGGGA  814

Query    1  ----------------------ATGATGGAGGAGCGTGCCAACCTGATGCACATGATGAAACTCAGCATCAAGG  52
                                  |||||||||||||||||||||||.|||||||||||||||||||||||.||||
Sbjct  815  GCGCGCAGCTTCCAAAGGCCAGATGATGGAGGAGCGTGCCAACCTAATGCACATGATGAAACTCAGCATTAAGG  888

Query   53  TGTTGCTCCAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCGGACCATGCCCCCTTGCAGCAGTTCTTTGTA  126
            |.||.||||||||.||.||.||||||||.|||||.||||||||.|||.||||||||||||||||||||||||||
Sbjct  889  TCTTACTCCAGTCTGCCCTTAGCCTGGGACGCAGTCTGGATGCAGACTATGCCCCCTTGCAGCAGTTCTTTGTA  962

Query  127  GTGATGGAGCACTGCCTCAAACATGGGCTGAAAGTTAAGAAGAGTTTTATTGGCCAAAATAAATCATTCTTTGG  200
            |||||||||||.|||||||||||||||||||||||.|||||||||||.||||||||||||||.||.||||||||
Sbjct  963  GTGATGGAGCATTGCCTCAAACATGGGCTGAAAGTCAAGAAGAGTTTCATTGGCCAAAATAAGTCTTTCTTTGG  1036

Query  201  TCCTTTGGAGCTGGTGGAGAAACTTTGTCCAGAAGCATCAGATATAGCGACTAGTGTCAGAAATCTTCCAGAAT  274
            ||||||||||||||||||.|||||||||||.|||||||||||||||||.||.||||||||.||||||||||||.
Sbjct 1037  TCCTTTGGAGCTGGTGGAAAAACTTTGTCCTGAAGCATCAGATATAGCTACCAGTGTCAGGAATCTTCCAGAAC  1110

Query  275  TAAAGACAGCTGTGGGAAGAGGCCGAGCGTGGCTTTATCTTGCACTCATGCAAAAGAAACTGGCAGATTATCTG  348
            ||||||||||.||||||||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1111  TAAAGACAGCCGTGGGAAGAGGCAGAGCGTGGCTTTATCTTGCTCTCATGCAAAAGAAACTGGCAGATTATCTG  1184

Query  349  AAAGTGCTTATAGACAATAAACATCTCTTAAGCGAGTTCTATGAGCCTGAGGCTTTAATGATGGAGGAAGAAGG  422
            |||||.||.||||||||.||.||.|||.||||.||||||||||||||.|||||.||||||||||||||.|||||
Sbjct 1185  AAAGTCCTCATAGACAACAAGCAGCTCCTAAGTGAGTTCTATGAGCCCGAGGCCTTAATGATGGAGGAGGAAGG  1258

Query  423  GATGGTGATTGTTGGTCTGCTGGTGGGACTCAATGTTCTCGATGCCAATCTCTGCTTGAAAGGAGAAGACTTGG  496
            .||||||||.||.||||||||||||||||||||.|||||.||||||||.||||||||.||.|||||||||||||
Sbjct 1259  AATGGTGATCGTGGGTCTGCTGGTGGGACTCAACGTTCTGGATGCCAACCTCTGCTTAAAGGGAGAAGACTTGG  1332

Query  497  ATTCTCAGGTTGGAGTAATAGATTTTTCCCTCTACCTTAAGGATGTGCAGGATCTTGATGGTGGCAAGGAGCAT  570
            ||||||||||.||.||.||.||.||.||.||||..||.|||||.|..|||||||||||..|.||||..||||||
Sbjct 1333  ATTCTCAGGTCGGGGTGATTGACTTCTCTCTCTGTCTGAAGGACGCACAGGATCTTGACAGCGGCAGAGAGCAT  1406

Query  571  GAAAGAATTACTGATGTCCTTGATCAAAAAAATTATGTGGAAGAACTTAACCGGCACTTGAGCTGCACAGTTGG  644
            |||||||||||.||||||||||||||.||||||||.|||||.|||||||||||||||.|.||||||||||||||
Sbjct 1407  GAAAGAATTACCGATGTCCTTGATCAGAAAAATTACGTGGAGGAACTTAACCGGCACCTAAGCTGCACAGTTGG  1480

Query  645  GGATCTTCAAACCAAGATAGATGGCTTGGAAAAGACTAACTCAAAGCTTCAAGAAG------------------  700
            |||||||||.||.|||||||||||||||||||||||.|||||||||||||||||||                  
Sbjct 1481  GGATCTTCAGACGAAGATAGATGGCTTGGAAAAGACGAACTCAAAGCTTCAAGAAGAGGAAGAGAGAGAGACTG  1554

Query  701  --------------------------------------------------------------------------  700
                                                                                      
Sbjct 1555  AAAGGACAGGAAGAAGGAGGGCTGAGGCTGAGGAAGAAGGCTTGCTGCCCGCTGCCCGGCAATCTCCCTGCTGG  1628

Query  701  ---------------------------------------------------------AGCTTTCAGCTGCAACA  717
                                                                     |||||||||||||||||
Sbjct 1629  ATACATCTTGTCTCCTGTTAGCAGGAGGGGGGTTGCTCAGCCTTGAGACTTTTCCACAGCTTTCAGCTGCAACA  1702

Query  718  GACCGAATTTGCTCACTTCAAGAAGAACAGCAGCAGTTAAGAGAACAAAATGAATTAATTCGAGAAAGAAGTGA  791
            |||||||||||.||.||.|||.|||||||.||||||.|.||||||||.||.|||.||||||||||||||||.||
Sbjct 1703  GACCGAATTTGTTCCCTACAAAAAGAACAACAGCAGCTGAGAGAACAGAACGAAGTAATTCGAGAAAGAAGCGA  1776

Query  792  AAAGAGTGTAGAGATAACAAAACAGGATACCAAAGTTGAGCTGGAGACTTACAAGCAAACTCGGCAAGGTCTGG  865
            .|||||.||.|||||||||||||||||.|||||.|||||.|||||||||||.|||||.||.|||||.||.||||
Sbjct 1777  GAAGAGCGTGGAGATAACAAAACAGGACACCAAGGTTGAACTGGAGACTTATAAGCAGACCCGGCAGGGCCTGG  1850

Query  866  ATGAAATGTACAGTGATGTGTGGAAGCAGCTAAAAGAGGAGAAGAAAGTCCGGTTGGAACTGGAAAAAGAACTG  939
            |||||||||||||.|||||||||||.|||||.||.|||||||||||||||||..|||||||||||||.||.|||
Sbjct 1851  ATGAAATGTACAGCGATGTGTGGAAACAGCTGAAGGAGGAGAAGAAAGTCCGACTGGAACTGGAAAAGGAGCTG  1924

Query  940  GAGTTACAAATTGGAATGAAAACCGAAATGGAAATTGCAATGAAGTTACTGGAAAAGGACACCCACGAGAAGCA  1013
            |||||.||.|||||||||||.||.||.|||||.||.||.||||||||.|||||.|||||||||||.||||||||
Sbjct 1925  GAGTTGCAGATTGGAATGAAGACGGAGATGGAGATCGCCATGAAGTTGCTGGAGAAGGACACCCATGAGAAGCA  1998

Query 1014  GGACACACTAGTTGCCCTCCGCCAGCAGCTGGAAGAAGTCAAAGCGATTAATTTACAGATGTTTCACAAAGCTC  1087
            .|||||.||.|||||||||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||.||
Sbjct 1999  AGACACGCTCGTTGCCCTCCGCCAGCAGCTGGAGGAAGTCAAAGCTATTAACTTACAGATGTTTCACAAAGTTC  2072

Query 1088  AGAATGCAGAGAGCAGTTTGCAGCAGAAGAATGAAGCCATCACATCCTTTGAAGGAAAAACCAACCAAGTTATG  1161
            |||.|||||||||||||||.|||||||||||||||||||||.||||.||||||||||||||||..||.||.|||
Sbjct 2073  AGAGTGCAGAGAGCAGTTTACAGCAGAAGAATGAAGCCATCGCATCTTTTGAAGGAAAAACCACTCAGGTGATG  2146

Query 1162  TCCAGCATGAAACAAATGGAAGAAAGGTTGCAGCACTCGGAGCGGGCGAGGCAGGGAGCTGAGGAGCGGAGCCA  1235
            |||||||||||.||||||||.||||||||.|||||..||||.|||||.|||||||..||.||.|||||.|||||
Sbjct 2147  TCCAGCATGAAGCAAATGGAGGAAAGGTTACAGCAGGCGGAACGGGCCAGGCAGGCGGCAGAAGAGCGAAGCCA  2220

Query 1236  CAAGCTGCAGCAGGAGCTGGGCGGGAGGATCGGCGCCCTGCAGCTGCAGCTCTCCCAGCTGCACGAGCAATGCT  1309
            ||||.|||||||||||||..||||||||..|.|.|||||||||||.|||||.||||||||||..||.|||||||
Sbjct 2221  CAAGTTGCAGCAGGAGCTCAGCGGGAGGGGCAGTGCCCTGCAGCTCCAGCTGTCCCAGCTGCGGGACCAATGCT  2294

Query 1310  CAAGCCTGGAGAAAGAATTGAAATCAGAAAAAGAGCAAAGACAGGCTCTTCAGCGCGAATTACAGCACGAGAAA  1383
            ||.|.||.|||||||||.||||.|||||||||||.||||||||.|||||.|||.|.|||.||||||..||||||
Sbjct 2295  CAGGTCTAGAGAAAGAACTGAAGTCAGAAAAAGAACAAAGACAAGCTCTCCAGAGAGAACTACAGCGTGAGAAA  2368

Query 1384  GACACTTCCTCTCTACTCAGGATGGAGCTGCAACAAGTGGAAGGACTGAAAAAGGAGTTGCGGGAGCTTCAGGA  1457
            |||||.||.|.|||.|||..||.|||||||||.|||||||||||.|||||.||||||.||||||||||.||.||
Sbjct 2369  GACACCTCTTGTCTGCTCCAGACGGAGCTGCAGCAAGTGGAAGGCCTGAAGAAGGAGCTGCGGGAGCTCCAAGA  2442

Query 1458  CGAGAAGGCAGAGCTGCAGAAGATCTGCGAGGAGCAGGAACAAGCCCTCCAGGAAATGGGCCTGCACCTCAGCC  1531
            |||||||||||||.|.|.||||.||||.|||||||||||.||||||||||||||||||||.||.|||||.||||
Sbjct 2443  CGAGAAGGCAGAGTTACGGAAGGTCTGTGAGGAGCAGGAGCAAGCCCTCCAGGAAATGGGACTACACCTTAGCC  2516

Query 1532  AGTCCAAGCTGAAGATGGAAGATATAAAAGAAGTGAACCAGGCACTGAAGGGCCACGCCTGGCTGAAAGATGAC  1605
            |||||||.||||||||||||||.|||||.|||||.||..|||||||||||||||||.|.|||.|||||||||||
Sbjct 2517  AGTCCAAACTGAAGATGGAAGACATAAAGGAAGTAAATAAGGCACTGAAGGGCCACACATGGTTGAAAGATGAC  2590

Query 1606  GAAGCGACACACTGTAGGCAGTGTGAGAAGGAGTTCTCCATTTCCCGGAGAAAGCACCACTGCCGGAACTGTGG  1679
            ||.||.|||||.||||.|||||||||||||||.|||||||||||.|||||.||||||||||||||.||||||||
Sbjct 2591  GAGGCAACACATTGTAAGCAGTGTGAGAAGGACTTCTCCATTTCTCGGAGGAAGCACCACTGCCGAAACTGTGG  2664

Query 1680  CCACATCTTCTGCAACACCTGCTCCAGCAACGAGCTGGCCCTGCCCTCCTACCCCAAGCCGGTGCGAGTGTGCG  1753
            ||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.|||||.|||||.|
Sbjct 2665  CCACATTTTCTGCAACACCTGCTCTAGCAACGAGCTGGCCCTGCCCTCCTACCCTAAGCCAGTGCGTGTGTGTG  2738

Query 1754  ACAGCTGCCACACCCTGCTCCTGCAGCGCTGCTCCTCCACGGCCTCC---------------------------  1800
            ||||||||||.||||||||.||||||||||||||||||||.||||||                           
Sbjct 2739  ACAGCTGCCATACCCTGCTACTGCAGCGCTGCTCCTCCACTGCCTCCTGAAGCCATCAGCCCCACCCACCAGCA  2812

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2813  GGGACCTTGACCTGTTGACCTCCATCCTCAGAGTGGAGGAAAGCCTCAGGTACAGTGCCAAACTTGGGATCTCC  2886

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2887  AGAGACCTGTAGGGACCCAAGAGAATCAAAGGAAAGAATGAAACCTTCACCAGGCTGTCAGCCTCGGAAGAGAA  2960

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 2961  TGCCAAGTGGCAGCTGAGCACTTTTCCATGGTCTCTATGGAGTCATCTCCTCTAGACAGACACTTCTGTGTCCT  3034

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 3035  CAGTTAAATCCTGGCTTTGGTACAGGTGCAACTTCATGACTTTGCTACTGTCACCTTCACTTTTCAAAGGGTTA  3108

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 3109  ACCTGTTGTGCAGCAGTTGCACTAGAGAATCCTTTCTCTTTCCTACCCACGTCCCACAGAAACCTTGATTTCTG  3182

Query 1801  --------------------------------------------------------------------------  1800
                                                                                      
Sbjct 3183  CTGTGCTTTGAACCTTGTGGGTCTGTCAGTGTGCCTTGTCTGCTTCGGCATCCAGCATTTGCCATCATGCTCCT  3256

Query 1801  -------------------------------------------------------------  1800
                                                                         
Sbjct 3257  GCCAACACCTACTGTCAGCCCTGCAATAAAATCCTTTATTTTTCACTCTTGTACAGACAAA  3317

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