Nucleotide Global Alignment

Description

• Query: ccsbBroad304_09188
• Subject: NM_001346747.2
• Aligned Length: 1918
• Identities: 1400
• Gaps: 515

Alignment

Query    1  ATGGCGGGCGGCGCGGGCTGGTCGGGCGCCCCCGCGGCTCTGCTGCGCTCCGTGCGCCGCCTGCGCGAGGTGTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGAGGTGTGCGGCCGCGACCCCGACGGCTTCCTGCGCGTGGAGCGCGTCGCGGCGCTCGGACTGCGCTTCGGCC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGGGCGAGGAGGTGGAAAAACTTGTGAAATATTTGGATCCCAACGACCTGGGGAGAATCAACTTCAAGGACTTT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TGCCGGGGGGTGTTCGCCATGAAAGGGTGCGAGGAGCTGCTGAAGGATGTGCTGTCGGTGGAGAGCGCGGGGAC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GCTGCCGTGCG-----CGCCAGAGATCCCAGACT-GCGTGGAG-CAGGGCAGCGAGGTCACAGGCCCCACCTTT  363
                  .||||     ||||||          || .|| |||| ||||||||||||||||||||||||||||||
Sbjct    1  ------ATGCGCACCCCGCCAG----------CTCTCG-GGAGCCAGGGCAGCGAGGTCACAGGCCCCACCTTT  57

Query  364  GCTGATGGCGAGCTCATCCCCAGGGAACCCGGCTTTTTTCCCGAGGACGAGGAGGAGGCTATGACGCTGGCGCC  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   58  GCTGATGGCGAGCTCATCCCCAGGGAACCCGGCTTTTTTCCCGAGGACGAGGAGGAGGCTATGACGCTGGCGCC  131

Query  438  ACCTGAGGGCCCCCAGGAGTTGTACACAGACAGCCCCATGGAGAGCACTCAGAGCCTGGAGGGGTCTGTCGGGA  511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  ACCTGAGGGCCCCCAGGAGTTGTACACAGACAGCCCCATGGAGAGCACTCAGAGCCTGGAGGGGTCTGTCGGGA  205

Query  512  GTCCTGCCGAGAAGGACGGGGGACTTGGGGGCCTGTTTCTGCCAGAAGACAAGTCCCTGGTCCACACTCCATCC  585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct  206  GTCCTGCCGAGAAGGACGGGGGACTTGGGGGCCTGTTTCTGCCAGAAGACAA----------------------  257

Query  586  ATGACGACCTCAGACCTTTCTACACACTCCACCACCTCGCTCATCAGCAATGAGGAGCAGTTTGAAGACTATGG  659
                                                                                      
Sbjct  258  --------------------------------------------------------------------------  257

Query  660  GGAGGGTGACGATGTGGACTGTGCCCCCAGCAGCCCTTGCCCCGATGATGAGACCAGGACCAACGTCTACTCGG  733
                                                                                      
Sbjct  258  --------------------------------------------------------------------------  257

Query  734  ACCTGGGGTCTTCGGTGTCTTCCAGTGCGGGGCAGACGCCTAGGAAAATGCGGCACGTGTACAACAGCGAATTG  807
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  -------------------------TGCGGGGCAGACGCCTAGGAAAATGCGGCACGTGTACAACAGCGAATTG  306

Query  808  CTAGATGTTTACTGCTCTCAATGCTGCAAGAAAATCAACCTGCTCAATGACTTGGAAGCCCGACTGAAAAACCT  881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  CTAGATGTTTACTGCTCTCAATGCTGCAAGAAAATCAACCTGCTCAATGACTTGGAAGCCCGACTGAAAAACCT  380

Query  882  GAAGGCCAACAGCCCCAACCGAAAGATCTCCAGCACGGCCTTTGGACGGCAGCTCATGCACAGCAGCAACTTCA  955
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  GAAGGCCAACAGCCCCAACCGAAAGATCTCCAGCACGGCCTTTGGACGGCAGCTCATGCACAGCAGCAACTTCA  454

Query  956  GCAGCAGCAATGGCAGCACCGAAGACCTGTTCCGGGACAGCATTGACTCTTGCGACAATGACATCACAGAGAAG  1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  GCAGCAGCAATGGCAGCACCGAAGACCTGTTCCGGGACAGCATTGACTCTTGCGACAATGACATCACAGAGAAG  528

Query 1030  GTAAGCTTCCTGGAAAAGAAGGTGACAGAGCTGGAGAATGACAGCCTGACCAATGGGGACCTGAAGAGCAAGCT  1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  529  GTAAGCTTCCTGGAAAAGAAGGTGACAGAGCTGGAGAATGACAGCCTGACCAATGGGGACCTGAAGAGCAAGCT  602

Query 1104  GAAGCAAGAGAACACACAGCTGGTGCACAGGGTGCATGAGCTGGAGGAGATGGTGAAGGATCAGGAGACCACGG  1177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  GAAGCAAGAGAACACACAGCTGGTGCACAGGGTGCATGAGCTGGAGGAGATGGTGAAGGATCAGGAGACCACGG  676

Query 1178  CCGAGCAGGCTCTGGAGGAGGAGGCGCGGCGCCACCGCGAGGCCTACGGCAAGCTGGAGAGGGAGAAGGCTACC  1251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  677  CCGAGCAGGCTCTGGAGGAGGAGGCGCGGCGCCACCGCGAGGCCTACGGCAAGCTGGAGAGGGAGAAGGCTACC  750

Query 1252  GAGGTGGAGCTGCTCAATGCCAGGGTGCAGCAGTTGGAGGAAGAAAATACAGAGCTTAGAACAACAGTGACTCG  1325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  751  GAGGTGGAGCTGCTCAATGCCAGGGTGCAGCAGTTGGAGGAAGAAAATACAGAGCTTAGAACAACAGTGACTCG  824

Query 1326  GCTCAAGTCTCAAACAGAGAAACTGGATGAGGAGCGGCAGCGCATGTCTGACCGTCTGGAGGACACCAGCCTGC  1399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  825  GCTCAAGTCTCAAACAGAGAAACTGGATGAGGAGCGGCAGCGCATGTCTGACCGTCTGGAGGACACCAGCCTGC  898

Query 1400  GGCTCAAAGATGAGATGGACCTGTACAAGCGCATGATGGACAAGCTGCGACAGAACCGCCTTGAGTTCCAGAAG  1473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  899  GGCTCAAAGATGAGATGGACCTGTACAAGCGCATGATGGACAAGCTGCGACAGAACCGCCTTGAGTTCCAGAAG  972

Query 1474  GAGCGGGAGGCGACGCAGGAGCTCATCGAGGACTTGCGGAAGGAGCTGGAGCACCTGCAGATGTACAAGCTGGA  1547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  973  GAGCGGGAGGCGACGCAGGAGCTCATCGAGGACTTGCGGAAGGAGCTGGAGCACCTGCAGATGTACAAGCTGGA  1046

Query 1548  CTGCGAGCGGCCAGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCAATGCCAGGGCCCGCGAGGTGG  1621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047  CTGCGAGCGGCCAGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCAATGCCAGGGCCCGCGAGGTGG  1120

Query 1622  AGCTCGAGCACGAGGTCAAGCGGCTCAAGCAGGAGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGG  1695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121  AGCTCGAGCACGAGGTCAAGCGGCTCAAGCAGGAGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGG  1194

Query 1696  CAGATTTTGAGCCTCAGCCTCTACGAAGCAAAAAACCTCTTTGCTGCCCAGACTAAAGCCCAGTCTCTGGCTGC  1769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195  CAGATTTTGAGCCTCAGCCTCTACGAAGCAAAAAACCTCTTTGCTGCCCAGACTAAAGCCCAGTCTCTGGCTGC  1268

Query 1770  AGAGATAGACACCGCCTCGCGCGATGAGCTAATGGAAGCCCTGAAGGAGCAGGAGGAGATCAACTTCCGGCTGA  1843
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269  GGAGATAGACACCGCCTCGCGCGATGAGCTAATGGAAGCCCTGAAGGAGCAGGAGGAGATCAACTTCCGGCTGA  1342

Query 1844  GGCAGTACATGGACAAGATTATCCTCGCCATCCTGGACCACAATCCCTCCATCCTCGAGATCAAACAC  1911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343  GGCAGTACATGGACAAGATTATCCTCGCCATCCTGGACCACAATCCCTCCATCCTCGAGATCAAACAC  1410