Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09276
- Subject:
- XR_001778004.1
- Aligned Length:
- 2511
- Identities:
- 1588
- Gaps:
- 661
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGAGGCTTCAATCCCTGCTGCTTACTCCGGGACAGAAACGCACACCTCTGGGACTGAGGGTTTTTGCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCAGCACCTGCTTTGAGGTGTCCAGATCTCCCCGACAAAAGCGCTTGGTACAGCCCGGGGATTCCCCGCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGCCGCCCTGACGTCATGGAGTCCCCGGGAGGCTCCGCCCCCCTGCTCGGGCTGGAGCTTTGCGCGGCCGCTA 222
Query 1 --------------ATGGCGGGGCCGGGCGTC---------CCCGGTGCCCCCGCAGCGCGCTGGAAACGCCAC 51
|||||.||.||.||||.| |||.|.||.|||||.||...||||||.||||||
Sbjct 223 GGGACTCGGCGGCCATGGCAGGACCTGGCGCCCCCTGCGATCCCTGCGCGCCCGCCGCTGTCTGGAAGCGCCAC 296
Query 52 ATCGTGCGGCAGCTGCGGCTTCGGGACCGTACGCAAAAGGCGCTTTTCCTGGAGCTGGTGCCGGCCTATAACCA 125
|||||||||||||||||||.|||||||||.||||||||||||||.|||||||||||.||||||||.||||||||
Sbjct 297 ATCGTGCGGCAGCTGCGGCATCGGGACCGCACGCAAAAGGCGCTCTTCCTGGAGCTAGTGCCGGCTTATAACCA 370
Query 126 TCTCTTAGAGAAGGCTGAGCTGCTGGACAAGTTCTCAAAGAAGCTGCAGCCGGAGCCAAACAGTGTCACTC-CC 198
||||.|||||||||||||.|||||.|.||||||||||.|.|||.||.||.|.||.|||||...||.|| || ||
Sbjct 371 TCTCCTAGAGAAGGCTGAACTGCTAGCCAAGTTCTCAGAAAAGTTGAAGTCCGAACCAAAGGATGCCA-TCTCC 443
Query 199 ACCACCCACCAGGGCCCCTGGGAGGAG---TCAGAGCTTGACTCAGACCAAGTCCCATCACTGGTCGCACTGAG 269
|||...||..|||.|....|||||||| ||||.|...|.|.|.|||||||||.||||||..|.|.|.|||||
Sbjct 444 ACCCGACATGAGGACTGGAGGGAGGAGGTCTCAGGGACAGGCCCTGACCAAGTCTCATCACCAGCCTCTCTGAG 517
Query 270 GGTGAAGTGGCAGGAGGAGGAGGAGGGGCTCCGGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGGAGAAGG 343
|||||||||||||.|||||.||.|||||||.|.||||||||||||||||||||||||||||||||||.|||||.
Sbjct 518 GGTGAAGTGGCAGCAGGAGAAGAAGGGGCTGCAGCTGGTCTGTGGTGAGATGGCCTACCAGGTGGTGAAGAAGA 591
Query 344 GCGCGGCCCTGGGCACGCTGGAGTCGGAGCTGCAGCAGAGGCAAAGCAGGCTGGCAGCCCTGGAGGCCCGCGTG 417
||||.|||||.|.|||.|||.||||..|||||.||.||.||||...||||.|||.|||||||.|||||.|||||
Sbjct 592 GCGCAGCCCTAGACACCCTGCAGTCACAGCTGGAGGAGCGGCAGGACAGGTTGGAAGCCCTGCAGGCCTGCGTG 665
Query 418 GCGCAGCTGCGAGAGGCGCGGGCGCAGCAGGCCCAGCAGGTGGAGGAGTGGCGGGCGCAGAATGCGGTGCAGCG 491
|.||||||.|..|||||||||||.||||||.|||.||||.|||||||..|||..|||.||||.||.|..|||.|
Sbjct 666 GTGCAGCTACAGGAGGCGCGGGCTCAGCAGTCCCGGCAGCTGGAGGAACGGCAAGCGGAGAACGCAGCACAGAG 739
Query 492 GGCAGCCTACGAGGCGCTGCGCGCGCACGTCGGGCTCCGGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCGC 565
.|.||||||.|||.||||||.|..|||.|..|.||.||.|||||||||||||||||||||||||||||||||.|
Sbjct 740 AGAAGCCTATGAGACGCTGCTCCAGCAAGCTGTGCACCAGGAGGCGGCACTGCGCAGGCTCCAGGAAGAGGCAC 813
Query 566 GCGACCTGCTGGAGAGGCTCGTGCAGCGCAAGGCGCGCGCCGCGGCCGAGCGCAACCTGCGCAACGAGCGCCGG 639
|||||.||||||||..|||.||||||||.||||||||||||||.||.||||||||.||.||.||.|||||..|.
Sbjct 814 GCGACTTGCTGGAGCAGCTTGTGCAGCGTAAGGCGCGCGCCGCCGCTGAGCGCAATCTACGTAATGAGCGTAGA 887
Query 640 GAGCGGGCCAAGCAGGCGCGGGTGTCCCAGGAGCTGAAGAAGGCTGCCAAGCGGACCGTGAGCATCAGCGAGGG 713
|||.|||||||.|||||.|.|||||||||||||||||||||.||.||.||||||||.|||||||||||||||..
Sbjct 888 GAGAGGGCCAACCAGGCTCTGGTGTCCCAGGAGCTGAAGAAAGCGGCTAAGCGGACTGTGAGCATCAGCGAGAT 961
Query 714 CCCGGACACCCTAGGCGATTGGATGAGGGAGAGAAGGGAGACTCTGGCTCTGGCCCCTG------AGCCAGAGC 781
|||..||||.||||..|||.||| .||.|||| ||||||.|||||||.||.|||| .|||.|||.
Sbjct 962 CCCAAACACTCTAGAAGATGGGA----CGAAAGAA--GAGACTGTGGCTCTAGCTCCTGCCGCTCTGCCTGAGT 1029
Query 782 CCCTGGAGAAGGAAGCTTGTGAGAAGTGGAAGAGGCCCTTCAGGTCTGCCTCAGCCACCTCCCTGACGCTGTCC 855
.|...||||..||..|||||||.||.|||||||||||.||||||||||||||.||||||||||||||.||||||
Sbjct 1030 TCTCAGAGAGTGAGACTTGTGAAAAATGGAAGAGGCCTTTCAGGTCTGCCTCGGCCACCTCCCTGACACTGTCC 1103
Query 856 CACTGTGTGGATGTGGTGAAGGGGCTTCTGGATTTTAAGAAGAGGAGAGGTCACTCAATTGGGGGAGCCCCTGA 929
|.||||||||||||||||||||||||..||||.||.|||||.||.|||||||||||..|||||||.||.|||||
Sbjct 1104 CGCTGTGTGGATGTGGTGAAGGGGCTGTTGGACTTCAAGAAAAGAAGAGGTCACTCGGTTGGGGGCGCACCTGA 1177
Query 930 GCAGCGATACCAGATCATCCCTGTGTGTGTGGCTGCCCGACTTCCTACCCGGGCTCAGGATGTGCTGGATGCCC 1003
||||||.|||||.|.||||||||||||||||.||||||.|.||||..|||.||||||||||||..|||||||||
Sbjct 1178 GCAGCGGTACCAAAGCATCCCTGTGTGTGTGTCTGCCCAAATTCCCTCCCAGGCTCAGGATGTCTTGGATGCCC 1251
Query 1004 ACCTCTCTGAGGTCAATGCTGTTCGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGCCTG 1077
|.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1252 ATCTCTCTGAGGTCAATGCTGTTTGTTTTGGCCCCAACAGCAGCCTCCTGGCCACTGGAGGGGCTGACCGGCTG 1325
Query 1078 ATCCACCTCTGGAATGTTGTGGGAAGTCGCCTGGAGGCCAACCAGACCCTGGAGGGAGCTGGTGGCAGCATCAC 1151
||||||||||||||||||||.|||.||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1326 ATCCACCTCTGGAATGTTGTAGGAGGTCGCCTGGAGGCCAACCAGACCCTGGAAGGAGCTGGCGGCAGCATCAC 1399
Query 1152 CAGTGTGGACTTTGACCCCTCGGGCTACCAGGTTTTAGCAGCAACTTACAACCAGGCTGCCCAGCTCTGGAAGG 1225
|||||||||.|||||||||||.||||.|||||||||.|||||.|||||||||||||||||||||||||||||||
Sbjct 1400 CAGTGTGGATTTTGACCCCTCAGGCTCCCAGGTTTTGGCAGCTACTTACAACCAGGCTGCCCAGCTCTGGAAGG 1473
Query 1226 TGGGGGAGGCACAGTCCAAGGAGACACTGTCTGGACACAAGGATAAGGTGACAGCTGCCAAATTCAAGCTAACG 1299
||||.|||.|.|||||||||||.|||.||||.|||||||||||.||.|||||.||||||||||||||||||||.
Sbjct 1474 TGGGAGAGACTCAGTCCAAGGAAACATTGTCCGGACACAAGGACAAAGTGACTGCTGCCAAATTCAAGCTAACA 1547
Query 1300 AGGCACCAGGCAGTGACTGGGAGCCGCGACCGGACAGTGAAGGAGTGGGACCTCGGCCGTGCCTA--------- 1364
||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.|||||
Sbjct 1548 AGGCACCAGGCAGTGACTGGGAGCCGAGACCGGACAGTGAAGGAGTGGGACCTGGGCCGCGCCTACTGTGAGGC 1621
Query 1365 ----------TTGC------------------------------------------------------------ 1368
||||
Sbjct 1622 CCAATCCCATTTGCCCCCAGCTCTCAGTCATCGGGGCCCTTACCTTGCTATGTTGTGGTAGCCGCGGGACTCAT 1695
Query 1369 -------------------------------------------------------------------------- 1368
Sbjct 1696 ATTCATTTGGGCTCAGCCTTCTAATGATTTCCTTCTCTGTCACTGCTGCTCCTTTCCTGCTTTCTTGGTAACCC 1769
Query 1369 -----------TCCAGGACCATCAATGTCCTTTCCTACTGTAATGACGTGGTGTGTGGGGACCATATCATCATT 1431
||||||||.||||||||.|||||||||||.||||||||||||||.||||||||.||||||||.
Sbjct 1770 TGGCCTTTGGTTCCAGGACTATCAATGTACTTTCCTACTGCAATGACGTGGTGTGCGGGGACCACATCATCATC 1843
Query 1432 AGTGGCCACAATGACCAGAAGATCCGGTTCTGGGACAGCAGGGGGCCCCACTGCACCCAGGTCATCCCTGTGCA 1505
|||||||||||||||||.||||||||||||||||||||||||||.||.|||||||.||||||||||||.|||||
Sbjct 1844 AGTGGCCACAATGACCAAAAGATCCGGTTCTGGGACAGCAGGGGCCCTCACTGCATCCAGGTCATCCCCGTGCA 1917
Query 1506 GGGCCGGGTCACCTCCCTGAGCCTCAGCCACGACCAACTGCACCTGCTCAGCTGTTCCCGAGACAACACACTCA 1579
|||||||||.|||||||||..|||||||.|.|||||.|||||.|||||.|||||||||||||||||||||||||
Sbjct 1918 GGGCCGGGTTACCTCCCTGCACCTCAGCTATGACCAGCTGCATCTGCTTAGCTGTTCCCGAGACAACACACTCA 1991
Query 1580 AGGTCATCGACCTGCGTGTCAGCAACATCCGCCAGGTGTTCAGGGCCGATGGCTTCAAGTGTGGTTCTGACTGG 1653
||||.|||||||||||..|||||||.|||||.||||||||||||||.||||||||||||||..|||||||||||
Sbjct 1992 AGGTTATCGACCTGCGAATCAGCAATATCCGACAGGTGTTCAGGGCAGATGGCTTCAAGTGCAGTTCTGACTGG 2065
Query 1654 ACCAAAGCTGTGTTCAGCCCGGACAGAAGCTATGCACTGGCAGGCTCCTGTGATGGGGCCCTTTACATCTGGGA 1727
||||||||||||||||||||.||||||||||||||||||||||||||.|...|.||.|.|||.|||||||||||
Sbjct 2066 ACCAAAGCTGTGTTCAGCCCTGACAGAAGCTATGCACTGGCAGGCTCTTCAAACGGCGACCTGTACATCTGGGA 2139
Query 1728 TGTGGACACCGGGAAACTGGAGAGCAGACTACAGGGACCCCATTGCGCTGCCGTCAACGCCGTGGCCTGGTGCT 1801
||||.||||||||||||||||||.|||.||||||||||||||.|||.||||.||.||.||||||||.|||||||
Sbjct 2140 TGTGAACACCGGGAAACTGGAGACCAGCCTACAGGGACCCCACTGCACTGCTGTTAATGCCGTGGCTTGGTGCT 2213
Query 1802 ACTCCGGGAGCCACATGGTGAGCGTGGACCAGGGCAGGAAGGTTGTGCTCTGGCAG------------------ 1857
.||||||||.||||.|.|||||.||||||||.|||||||||||.|||||||||||.
Sbjct 2214 TCTCCGGGAACCACGTTGTGAGTGTGGACCAAGGCAGGAAGGTGGTGCTCTGGCACTGAGTGGCACAAGTTCCC 2287
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2288 TGTATGGGTTGGACTCTGAAGCCAGAAGCCAGAGAACAGCTTCCCTGTGCTCAGGACTCCAGAGCTGGGGTTGG 2361
Query 1858 -------------------------------------------------------------------------- 1857
Sbjct 2362 GGTCTACTACAGAATTCATGTGAGGGCCAGGCAGGACCTGGCCTGTTTGTTAAAAATCAAAGTGTGGGTTAGGA 2435
Query 1858 --------------------------------------------------------------------- 1857
Sbjct 2436 ACTACAGTTTTGTTTTTTAAAATCTATTTGTTTACTCTCTTCAGTGTTAAAAACTGTATCTAAGCCGTG 2504
