Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09280
- Subject:
- XR_001740355.1
- Aligned Length:
- 4471
- Identities:
- 2154
- Gaps:
- 2313
Alignment
Query 1 ---------------------------------------------------------------------ATGAG 5
|||||
Sbjct 1 AGCGACGTGCACGCAGTAGCCAGGCCTGACCCGCTGGTCCCTTGCTGGCGGGAGGAAAGAGGCGGCACCATGAG 74
Query 6 CCACGCAGTAACTATCGAGGAGCCCCAGGCCCAGCAGCAGGTGTCTCAAACTCGGTACCGGGAGAGGTCGCGGG 79
||||||||||||.||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 75 CCACGCAGTAACCATCGAGGAGCCCCAGGCCCAGCCGCAGGTGTCTCAAACTCGGTACCGGGAGAGGTCGCGGG 148
Query 80 CTGGGAGCCACATCTCCTCCAATCGAGCGTATGATTTTCTGTACGATCCATTGTTTATTGTGTCAAGTGAGAAA 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTGGGAGCCACATCTCCTCCAATCGAGCGTATGATTTTCTGTACGATCCATTGTTTATTGTGTCAAGTGAGAAA 222
Query 154 GACCATACACAGGCAAATATCCAAGCTACCCTGATTCGCAGCAGACTGAGAAAAGTTCCCAGGTTTAGAACCAT 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 223 GACCATACACAGGCAAATATCCAAGCTACCCTGATTCGCAGCAGACTGAGAAAAGTTCCCAGGTTTAAAACCAT 296
Query 228 GTTCAGTAACCTGATCCATTATCCAAGATATTCTCTATATTGGAGCAAGTCAGATCCTGTCCCACCATTTATCA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTTCAGTAACCTGATCCATTATCCAAGATATTCTCTATATTGGAGCAAGTCAGATCCTGTCCCACCATTTATCA 370
Query 302 GTCGGGAATGGAAGGGACATAAGGAGAAACACAGAGAAGCCCTCCGGCAGCTCACCACAACTGACGCTTCTTTT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTCGGGAATGGAAGGGACATAAGGAGAAACACAGAGAAGCCCTCCGGCAGCTCACCACAACTGACGCTTCTTTT 444
Query 376 CAGATGCCTAAAGAAGTTTATGAAGATCCTGAAGTTACTGGAAAGAATCGCTATAAATACTTTGAAAGGCCTTT 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAGATGCCTAAAGAAGTTTATGAAGATCCTGAAGTTACTGGAAAGAATCGCTATAAATACTTTGAAAGGCCTTT 518
Query 450 TCTCCCATTTTTTCAGCAGATGCCATTCAATGTTGTTTATGCCGTATCCAAGGCAGAACCATACACTTTTCCTC 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCTCCCATTTTTTCAGCAGATGCCATTCAATGTTGTTTATGCCGTATCCAAGGCAGAACCATACACTTTTCCTC 592
Query 524 CTACTTCTACTAAGCACCTATCCATCCCTTCAAAGTCTACTGTGGGCACTCAGACTGATTATCGGGATGCTGAC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTACTTCTACTAAGCACCTATCCATCCCTTCAAAGTCTACTGTGGGCACTCAGACTGATTATCGGGATGCTGAC 666
Query 598 GTTCAAACAGATCCATACTCTCCAGAATATGTAGTATGTCAGGACTCAATCCCTGAGCTCTTGACCCTGGCTAC 671
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTCAAACAGATCCATACTCTGCAGAATATGTAGTATGTCAGGACTCAATCCCTGAGCTCTTGACCCTGGCTAC 740
Query 672 GCTTACTTGGGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGGAGATGATAGAAAGAGCCCGCGAGAAGCGTG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTTACTTGGGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGGAGATGATAGAAAGAGCCCGCGAGAAGCGTG 814
Query 746 CTTGGGAAGCCTCTCTCCCCGCTCTGAGTGACACCTCCCAGTTTGAGAAGAGGAGGAAAATGATGAATGAAATG 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTTGGGAAGCCTCTCTCCCCGCTCTGAGTGACACCTCCCAGTTTGAGAAGAGGAGGAAAATGATGAATGAAATG 888
Query 820 GAGAGGAAGGAGTGGGCCTTCAGAGAGCAGGAGATTGAAAAACTGCAGGAGATTCGCCTGGAAGTTCTAAAAGA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGAGGAAGGAGTGGGCCTTCAGAGAGCAGGAGATTGAAAAACTGCAGGAGATTCGCCTGGAAGTTCTAAAAGA 962
Query 894 GCTGTTGAGGAAGCGTGAAGAGAATCAGAATGAAGTGAATATGAAGCACTTGAATGCCCGGTGGTCTAAACTGC 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCTGTTGAGGAAGCGTGAAGAGAATCAGAATGAAGTGAATATGAAGCACTTGAATGCCCGGTGGTCTAAACTGC 1036
Query 968 AGGAGGGAAAAGAGGCAAAAATGGCAAAAATTCAGCGCACGCATGTATCAACAATCAGAAAACTTGTAGGAAAG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGGAGGGAAAAGAGGCAAAAATGGCAAAAATTCAGCGCACGCATGTATCAACAATCAGAAAACTTGTAGGAAAG 1110
Query 1042 AGAAAGAATATAGAAGGGAAGTTGGAGAGAAGAAATATCATCAAGGATTATTCTGATTATGCATCACAGGTCTA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGAAAGAATATAGAAGGGAAGTTGGAGAGAAGAAATATCATCAAGGATTATTCTGATTATGCATCACAGGTCTA 1184
Query 1116 TGGACCTCTGTCTCGTCTTGGGTGTTTCCCAGACAACAACTCAGAGGACTTTGTAGTAAAAAACTACTATCTCA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGGACCTCTGTCTCGTCTTGGGTGTTTCCCAGACAACAACTCAGAGGACTTTGTAGTAAAAAACTACTATCTCA 1258
Query 1190 ACACCTATGAAGGATTAGTGGAACTTGAGTCATGTCTCCCAGATTTTGTGACACAACCCCAAATCAGAGCTCCA 1263
|||||||||
Sbjct 1259 ACACCTATG----------------------------------------------------------------- 1267
Query 1264 AAACCTAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAGCAAGGTTGGACTATGAGTTGGCAGAGGT 1337
Sbjct 1268 -------------------------------------------------------------------------- 1267
Query 1338 TCATAAGGCACTGTTGGATAAGAAGAATAAAGTTCTTGAAGTAAAGAAACCCCCTCGCTTCCTTCAAAGAAACC 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 ----AAGGCACTGTTGGATAAGAAGAATAAAGTTCTTGAAGTAAAGAAACCCCCTCGCTTCCTTCAAAGAAACC 1337
Query 1412 CAATACCTCAACCTCGGCTTCCAACTCCAACCTTGGAAATGACGTCCAATGAAGAAGAAGAAATGGAAATGGCT 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CAATACCTCAACCTCGGCTTCCAACTCCAACCTTGGAAATGACGTCCAATGAAGAAGAAGAAATGGAAATGGCT 1411
Query 1486 GTGATCTACCTTCAAAAGTTACTCCGGGGCAGAGTCGTTCAGAACATGATGTTTGAAGGGAAAGAAAAGCGACT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GTGATCTACCTTCAAAAGTTACTCCGGGGCAGAGTCGTTCAGAACATGATGTTTGAAGGGAAAGAAAAGCGACT 1485
Query 1560 GGAGTTGATCCAGGAGTTGCGCACCTGCCACGCACTACAAGAAGATGAAAAGCTGGTGAAAAAAGCCGAGAAGC 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GGAGTTGATCCAGGAGTTGCGCACCTGCCACGCACTACAAGAAGATGAAAAGCTGGTGAAAAAAGCCGAGAAGC 1559
Query 1634 AAGTGACCCTGGCCTTACAGCGGCAGAGGAACTTGCATGAGCACAAGGTGTCACTGGTTGAAAACCATTTGGCC 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AAGTGACCCTGGCCTTACAGCGGCAGAGGAACTTGCATGAGCACAAGGTGTCACTGGTTGAAAACCATTTGGCC 1633
Query 1708 GGACTGGAAGGAAGGGCACTAGCAGACATGTTTGACTTCCTGTCCAAAGAGCTGGTGAGACTGCAGGAGGAGAG 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 GGACTGGAAGGAAGGGCACTAGCAGACATGTTTGACTTCCTGTCCAAAGAGCTGGTGAGACTGCAGGAGGAGAG 1707
Query 1782 GAGGATCCATGCCTTTGTCATGCTGGCTGAGCGCCAGCGGCGGGTACGAGAGGCTGAAGAGAGTGGTCGGCGCC 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 GAGGATCCATGCCTTTGTCATGCTGGCTGAGCGCCAGCGGCGGGTACGAGAGGCTGAAGAGAGTGGTCGGCGCC 1781
Query 1856 AGGTGGAAAAACAGCGCCTGCGGGAGGAGGACGAGATATTTAAGGAGGTGGTTAAAGTTCACCATAGTACTATA 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 AGGTGGAAAAACAGCGCCTGCGGGAGGAGGACGAGATATTTAAGGAGGTGGTTAAAGTTCACCATAGTACTATA 1855
Query 1930 AGCTCCTACCTAGAAGACATAATACTGAATACCGAAGCGAATACTGCAGAAGAACAAGCCAGGGCAGAAATAGA 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 AGCTCCTACCTAGAAGACATAATACTGAATACCGAAGCGAATACTGCAGAAGAACAAGCCAGGGCAGAAATAGA 1929
Query 2004 GAAGATGGCTGAGAAAATCAATGACATTGCTTATGAAATGGAAAGCC--------------------------- 2050
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 GAAGATGGCTGAGAAAATCAATGACATTGCTTATGAAATGGAAAGCCGGTGTGTATCAAGAGAACAGATTGTAG 2003
Query 2051 -------------------GCCGAACCTATCTTCAGTCAGAGGAGATTGTTGCTGAGTTGGTTTATAGTTTTCT 2105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 AATGGACAGCCCATTTGCTGCCGAACCTATCTTCAGTCAGAGGAGATTGTTGCTGAGTTGGTTTATAGTTTTCT 2077
Query 2106 GATCCCAGAGGTGCAAAAATACTTTGTCAAAGAAAAAGTGAGGAACGCACAGCGGAAACATATTCTTGCAGCCC 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 GATCCCAGAGGTGCAAAAATACTTTGTCAAAGAAAAAGTGAGGAACGCACAGCGGAAACATATTCTTGCAGCCC 2151
Query 2180 ATCAGATCATCCACAGTTACACGGAAAGCATGGTTCAAAAGAAATTAACTGAGGGAGAGCAAGATGAGGCCTCA 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 ATCAGATCATCCACAGTTACACGGAAAGCATGGTTCAAAAGAAATTAACTGAGGGAGAGCAAGATGAGGCCTCA 2225
Query 2254 AATGCTGCCATGTTACTTGAGAAAGAAACTCAAAATGAGAACAACAGC-------------------------- 2301
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 AATGCTGCCATGTTACTTGAGAAAGAAACTCAAAATGAGAACAACAGCTAAGATTGTGATTTTTTTGTAAAAGA 2299
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2300 AGCTGTACGAATCATCATAAATAATTCCAATAGTCTGCACTTCTCCCAAGGTGTGCACTGCTCATAAACTTGCC 2373
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2374 AGTGTGTGATTCATGAGAAAGGAGATTTATTTTCCTTAAACATCCAATAATTTAAAATGATTTTCAATAATAAT 2447
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2448 AATCAAATGAAAAAGCTTCATTCTCTTCAGTGTCTTCTAGATGCCCTACTTAAAGAGAACATTTTCTTATGTCT 2521
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2522 CATTTCAATATTTTGTTAACTATGAGGATGTGCTGGTTTGTTGAATCAAACAAAAGGAAATGTTGTGGAATATT 2595
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2596 TTTCCAAGTAGTTTTGGTTCACTATTCACAGGACATTGGCATTATCTACTAAGGCTGAAAATGTGCATATTCCA 2669
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2670 TGACTCAGGATTTTATCTCCTAGATATATATTCAACAGAAATGCATGAGTATGTGCACCAACAGGCATGACAAA 2743
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2744 AATATTTATAGTAGTGGTGTTCACAATAGTCCCAAACTGGAAACCCAAGTGTCCATCTCCATCGGAACAGAAAA 2817
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2818 CTATACTTTGGTCTGCTTCTACAGTGGCACATCAACCCACCTTTGAGCTTTAGATCTAAGAAGTGTGTTCATGC 2891
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2892 AACAGCCATAGAGATGGTGCTATTGAAAGGCAATCTGCCCATCCTGTGTATTGACAAGCATCAGGATTCCAGGA 2965
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 2966 GGATTCTTCCTGATTCAAAGACTGTCAAATAGGAAAAAAGAAAACAGTAAATGAACAAAAACATCAACATGGAG 3039
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3040 TCCAAGTAATGAATTTATAGAGGAAAATGTATGCTACTCTGAAAACAAAGCTTATGTTAGAGAATATCTTACTG 3113
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3114 TAAGAAACAAGGAAAATTGCAGAAACATTTGCTGAGTGTTTTTAATAGGAGTCAAAAAGAAAGGGTCTTTTCAG 3187
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3188 AAACTGAAGTAGGAAATAATAACAGACAAGGTCAAAAAATAGATGCAGGCTGAAAAGAAAAGGAAGTGGGCTAA 3261
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3262 GATGGGAAAAATATAAAAAGATTTAAAATCCAGCAACAAAATTTACACATTCATTTGGATGCAGTGAAAAGGGC 3335
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3336 AGAAATACCACAGCAGAGAATAAAATTGATAATGTTGGCAACACATTTATTAAGTGATCCAACATGGGATGGGA 3409
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3410 AGGAATGGGCAAAGAGATTAAAATGACAGAAGTTAGCTGTAGATGACCTATCCCACAGCAATCGGAGTTCTTGA 3483
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3484 AGAAGAAACCAGAACAAATAAAATAGAAACAATAATCAGAGTTTAATAATTAATTTTCTGAGTTTTTTTTTAAA 3557
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3558 AAAACTAATTATACAAACTTGAAAGGGTTCACCTTGCCCTAGCAAAACTAGGATTGGGACACCTTTTTTTCCCC 3631
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3632 CTGAGGATCACTGACAAAAAACACTGCACCAGTAAGGAAGCAACTAAATTTTGTTTTGTTCTTTGAAAAAGGCT 3705
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3706 AACCTGAGCTAGGTAAAGGTTATATCATTCACTTTTGAAATAAACCATCGAGAACACAAAATGACAAGTGAGTT 3779
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3780 AGGTTGGGCTGATGGGATAGAAGGTGGGAGGGGAATGCTATACAGCTGGGAACAGCAGACTTTCTCTGAAGGGC 3853
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3854 CAGATGGTAACTACATTAGGGTTTGCGGGTCTGATGGTCGCCATCATAACTGCATACTCAACTCTGCCGTTGTA 3927
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 3928 GGGTAAGAGCAGCACTCGATGACACAGAAATGAATGCACATGACTGTGTTCCAGTAAAATTTTATTTTAATTAA 4001
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 4002 AATCAATTCATGTTTGAAAAAGGATTTAAAGTAGCTTCTAATAAAGGACATGTGTAATGAAACTTAAAATATGA 4075
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 4076 TATTTTCTTTAAAAATCTTTATCCTTATGTAGACTTCTAAAACTATGTTTTGCATTTAGACAGTCAAGGAAAAT 4149
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 4150 ACAAGTTGTTATACAATTCTCATTGACTAATTGAAGTTTACTAGGAGAGGAAAACTTTTTCTTGATACCGGCAA 4223
Query 2302 -------------------------------------------------------------------------- 2301
Sbjct 4224 TCTTTTACTTATAATGGCTTGAGTTAAAATGCTCCAACTTTTCTAATTTTTGCTTTTGAAAATAAAACACCTAT 4297
Query 2302 ------------------------------- 2301
Sbjct 4298 AGTGACAATAAAAACACACATTTAAAGCCAA 4328
