Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09284
- Subject:
- XR_387554.2
- Aligned Length:
- 3727
- Identities:
- 1917
- Gaps:
- 1481
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCCCGTAAGCCCTAGATGGGGGGAACTCTTTTTATCAACCGTTCCCGCCTCCCCTTGGCCGAGTCAGGCGTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGTCCCACTTCTGGATGTTTGTTTCTCCTTTCCGTCTGCTAAAGAAGATGACAAGAGGAAAGGAGTCCTCACCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTCCATGGGCAAAGAAGCAGTGCGGAACTGTTGTTTCCCGGAACTGAATAATTGCTTGCTTCCCAAGAGGTGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCGGAGCACAACACCCGGGGCAAGATGGCGGCCGGGCTTCGGCCGCTGCCCCGGGGCTGGCGGACCTCGGGGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCGGGCTAAGGCGGCGGTCGCTGCGGCCCGGACCCCGAGTGCGGGGCCTCGAACGGATAAAGATCTCCGGACT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGGCCAGAAAACCCAACTCCTCGGAAGCCAGAGGCTGCAGGAGGTCACTGATGGTCACCTAGCATCTCCGCT 444
Query 1 ------------------------------------------ATGTTCACCCTGTCTCAGACCTCGAGAGCATG 32
||||||||..|.|||||||||||.||||||||
Sbjct 445 GCACAGGCAGGTCCTCAGGCTTCGTCGTGTCAGTTTGCAAACATGTTCACTGTATCTCAGACCTCCAGAGCATG 518
Query 33 GTTCATCGATAGAGCCCGTCAGGCACGAGAAGAAAGGCTTGTGCAGAAGGAACGGGAGCGGGCAGCTGTTGTGA 106
|||||||||.||||||||.||||||||||||||.|||||.|||||||||||.||||||||..||||.||...||
Sbjct 519 GTTCATCGACAGAGCCCGGCAGGCACGAGAAGAGAGGCTGGTGCAGAAGGAGCGGGAGCGCTCAGCGGTGACGA 592
Query 107 TCCAGGCCCATGTCCGGAGTTTTCTCTGTCGGAGTCGACTGCAGAGAGATATCAGGAGAGAGATTGATGACTTT 180
|||||||||..|||||.|||||.|||||.|||||.||||||||.|||||.|||||||.||||||||||||.|||
Sbjct 593 TCCAGGCCCTAGTCCGCAGTTTCCTCTGCCGGAGGCGACTGCACAGAGACATCAGGAAAGAGATTGATGAGTTT 666
Query 181 TTTAAAGCAGATGACCCTGAGTCCACTAAAAGAAGTGCACTTTGTATTTTCAAGATTGCCAGGAAACTGCTGTT 254
||||..||.|||||..|||.|||||.||||||||||||||||||||||||.|||||||||||||.|||||||||
Sbjct 667 TTTAGTGCTGATGAGTCTGGGTCCAGTAAAAGAAGTGCACTTTGTATTTTTAAGATTGCCAGGAGACTGCTGTT 740
Query 255 CCTATTCAGAATCAAAGAGGATAATGAGAGATTTGAGAAGTTGTGTCGCAGCATCCTGAGCAGCATGGATGCTG 328
..|||.||.||..|..|||||.|..||||||.|.||||||||||||||.||||||||||.||||||||||||.|
Sbjct 741 TATATGCAAAACTACCGAGGACAGCGAGAGACTGGAGAAGTTGTGTCGAAGCATCCTGAACAGCATGGATGCCG 814
Query 329 AGAATGAGCCTAAGGTGTGGTATGTGTCCCTGGCTTGTTCTAAGGACCTCACCCTCCTTTGGATTCAACAGATC 402
||||||||||.|||||||||||.||||||||||||...||.|||||||||||.||.||.||||||.|.||||||
Sbjct 815 AGAATGAGCCAAAGGTGTGGTACGTGTCCCTGGCTCTCTCCAAGGACCTCACGCTGCTGTGGATTAAGCAGATC 888
Query 403 AAGAACATTTTGTGGTACTGCTGTGATTTTCTCAAGCAGCTCAAGCCTGAAATCCTGCAGGACTCCCGACTCAT 476
||||.|||..|||||.||||||||||..||||...||||||||||||.||.|||.|.|||||||||.|.|||||
Sbjct 889 AAGAGCATCCTGTGGCACTGCTGTGAGCTTCTGGGGCAGCTCAAGCCAGAGATCTTACAGGACTCCAGGCTCAT 962
Query 477 CACCCTGTACCTCACGATGCTTGTCACCTTCACAGACACTTCAACGTGGAAAATTCTTCGGGGAAAAGGTGAAA 550
|||.|||||||||||.||||||||.||||||||||||||||||||.|||||.|||||.||||||||||||||.|
Sbjct 963 CACGCTGTACCTCACCATGCTTGTGACCTTCACAGACACTTCAACATGGAAGATTCTCCGGGGAAAAGGTGAGA 1036
Query 551 GTCTTCGACCAGCGATGAACCACATTTGTGCAAATATAATGGGACATCTCAACCAGCATGGATTTTATTCTGTG 624
|.|||||.|||||..|||||||||||||.||||||||||||||.|||||||||||||.||||.||||.|||||.
Sbjct 1037 GCCTTCGGCCAGCCCTGAACCACATTTGCGCAAATATAATGGGCCATCTCAACCAGCGTGGACTTTACTCTGTA 1110
Query 625 CTGCAGATATTGTTAACCCGTGGCCTGGCAAGACCCCGTCCTTGTCTATCCAAAGGCACTTTAACAGCAGCTTT 698
.|||||.||.||.|.|||||.||||||||.||.|||||.||.|||||.||||||||||..|||||||||||.||
Sbjct 1111 TTGCAGGTACTGCTGACCCGAGGCCTGGCCAGGCCCCGGCCCTGTCTGTCCAAAGGCATGTTAACAGCAGCCTT 1184
Query 699 TTCTCTAGCGTTACGCCCTGTGATTGCTGCACAGTTCTCAGACAATCTGATTCGGCCGTTCCTCATCCACATCA 772
.|||||.||..|.|||||||||.|||||||.|||||||||||||||||.||.||.||.|||.||||||||.|||
Sbjct 1185 CTCTCTGGCCCTGCGCCCTGTGGTTGCTGCGCAGTTCTCAGACAATCTTATGCGACCATTCATCATCCACGTCA 1258
Query 773 TGTCTGTGCCTGCTCTGGTGACTCATCTCAGCACAGTGACCCCTGAGCGCCTCACTGTTTTAGAATCCCATGAC 846
||||.||.||||||||.|||.|||||||||||||.|||.||||||||||||||...||||||||.|||||||||
Sbjct 1259 TGTCGGTACCTGCTCTCGTGGCTCATCTCAGCACCGTGGCCCCTGAGCGCCTCGGCGTTTTAGAGTCCCATGAC 1332
Query 847 ATGCTTCGTAAATTCATCATATTTTTAAGAGACCAAGATCGATGCCGTGATGTATGTGAAAGTTTAGAAGGATG 920
||||||||||||||||||.|.||..|.|||||...|||.||||||||.||||..|||||.|||||||||||.||
Sbjct 1333 ATGCTTCGTAAATTCATCGTCTTCCTGAGAGATAGAGACCGATGCCGCGATGCTTGTGAGAGTTTAGAAGGCTG 1406
Query 921 CCATACGCTTTGTCTAATGGGCAACCTCCTACACTTGGGCTCCCTCAGCCCCAGAGTGTTAGAGGAGGAGACAG 994
||||||.||.|||||.||||||||.|||||.|||||||||||||||||||.|||..||||||||||.||||..|
Sbjct 1407 CCATACCCTGTGTCTCATGGGCAATCTCCTGCACTTGGGCTCCCTCAGCCTCAGGCTGTTAGAGGAAGAGATGG 1480
Query 995 ATGGGTTCGTGAGTTTGCTCACCCAGACGCTGTGCTACTGTCAGAAGTATGTGTCTCAGAAGAAGTCCAACCTG 1068
|||||||.|||||...||||||.||||.|||||||||||||||||||||.|||.||||||||||||||||||||
Sbjct 1481 ATGGGTTTGTGAGCGCGCTCACGCAGATGCTGTGCTACTGTCAGAAGTACGTGGCTCAGAAGAAGTCCAACCTG 1554
Query 1069 ACCCACTGGCATCCTGTCCTTGGCTGGTTCTCCCAATCTGTGGATTATGGCCTTAACGAGTCAATGCACTTGAT 1142
|||||||||||.|||||.||.||||||||.||||||.||||||||||.|||||.||.||.||.|||.||.||||
Sbjct 1555 ACCCACTGGCACCCTGTGCTCGGCTGGTTTTCCCAACCTGTGGATTACGGCCTCAATGATTCCATGTACCTGAT 1628
Query 1143 CACCAAACAGCTGCAGTTCTTGTGGGGGGTGCCTCTGATCCGGATCTTCTTCTGTGACATCCTGAGCAAGAAGC 1216
||||||.||||||||||||.||||||.|||||||||.|||||.||..|||||.|||||||||||||||.|||||
Sbjct 1629 CACCAAGCAGCTGCAGTTCCTGTGGGCGGTGCCTCTCATCCGCATTCTCTTCAGTGACATCCTGAGCAGGAAGC 1702
Query 1217 TACTGGAG-AGCCAGGAGCCAGCCCACG-------CACAGCCAGCATCCCCTCAGAATGTGCTCCCAGTGAAGA 1282
|.|||||| |..|| |||||.|||| || |.|||||..|.||.||.||||..||||||||.|||||||
Sbjct 1703 TGCTGGAGCATGCA-GAGCCGGCCC-CGGTGCAACCGCAGCCGTCCTCACCGCAGACGGTGCTCCCCGTGAAGA 1774
Query 1283 GTCTCCTAAAGCGTGCTTTTCAAAAGTCGGCATCAGTCCGGAATATTCTCAGGCCTGTCGGGGGTAAACGGGTC 1356
|.|||||.||||||||.|||||.||||||||.||.||.|||||.||.|||||||||||.|||||....||.|||
Sbjct 1775 GCCTCCTCAAGCGTGCGTTTCAGAAGTCGGCTTCGGTTCGGAACATCCTCAGGCCTGTTGGGGGCCGCCGTGTC 1848
Query 1357 GACTCTGCAGAAGTCCAGAAGGTTTGCAACATCTGTGTCCTCTACCAGACCTCGCTGACAACTCTCACACAGAT 1430
|||||.||.||.||.|.||||||.||||||||.||.||.||||||||||||||||||||.||.|||||.|||||
Sbjct 1849 GACTCCGCTGAGGTGCGGAAGGTCTGCAACATTTGCGTGCTCTACCAGACCTCGCTGACGACCCTCACCCAGAT 1922
Query 1431 TCGGCTGCAGATACTCACAGGTCTCACTTACCTTGATGACCTGCTTCCCAAACTGTGGGCATTTATCTGTGAGC 1504
.||.||||||||.|||||||||||.||.|||||.|||||||||||.|||||.||.|||||.|||||||||||||
Sbjct 1923 CCGCCTGCAGATCCTCACAGGTCTTACGTACCTGGATGACCTGCTGCCCAAGCTCTGGGCGTTTATCTGTGAGC 1996
Query 1505 TCGGGCCCCACGGAGGGTTAAAGCTCTTCTTGGAATGCCTGAACAATGACACTGAAGAGTCCAAGCAACTCTTG 1578
|.|||||||||||.|||.|.|||||||||.||||.|||||||||||||||||||.||||||||||||.|||.||
Sbjct 1997 TGGGGCCCCACGGCGGGCTCAAGCTCTTCCTGGAGTGCCTGAACAATGACACTGGAGAGTCCAAGCAGCTCCTG 2070
Query 1579 GCCATGCTGATGCTGTTCTGTGACTGTTCGCGGCACCTCATCACA----------------------------- 1623
||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct 2071 GCCATGCTGATGCTCTTCTGTGACTGTTCCCGGCACCTCATCACAATTCTGAACAGTTCTCTGCCTCGTGTAGC 2144
Query 1624 ATCCTTGATGACATTGAAGTTTATGAAGAACAGATTTCATTCAAACTGGAAGAGCTGGTCACTATCTCCTCTTT 1697
|||||.|||||||||||||||||||||||||||||.||.|||||.|||||||||||||||||.||||||||.||
Sbjct 2145 ATCCTCGATGACATTGAAGTTTATGAAGAACAGATCTCCTTCAAGCTGGAAGAGCTGGTCACCATCTCCTCGTT 2218
Query 1698 CCTGAATTCTTTTGTGTTTAAGATGATCTGGGATGGAATTGTAGAGAACGCCAAGGGTGAGACCTTGGAGCTGT 1771
|||.|||||.||.||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||
Sbjct 2219 CCTCAATTCCTTCGTGTTTAAGATGATCTGGGACGGAATTGTAGAGAATGCCAAGGGTGAGACCTTGGAGCTGT 2292
Query 1772 TCCAGTCTGTCCACGGGTGGCTTATGGTGCTGTACGAGCGGGACTGCCGGCGGCGCTTCACCCCCGAGGACCAC 1845
|||||||.|||||.||.|||||.|||||||||||.|||||.||||||||.||||||||..|.||.|||||||||
Sbjct 2293 TCCAGTCCGTCCATGGCTGGCTGATGGTGCTGTATGAGCGAGACTGCCGCCGGCGCTTTGCTCCGGAGGACCAC 2366
Query 1846 TGGCTGCGAAAGGATCTCAAACCTAGCGTGCTCTTCCAAGAACTCGACAGGGACAGAAAACGGGCACAGTTGAT 1919
|||||.||.|.|||.|||||.|||.|.|||||||||||.||.|||||||.||||.|||...||||.|||.||.|
Sbjct 2367 TGGCTACGGAGGGACCTCAAGCCTGGTGTGCTCTTCCAGGAGCTCGACAAGGACCGAAGGAGGGCTCAGCTGGT 2440
Query 1920 CCTGCAGTACATCCCACATGTCATCCCTCACAAAAACAGAGTTCTACTGTTTCGAACCATGGTTACCAAGGAGA 1993
|||||||.|||||||.||.|||.|.||||||||.|||||||||||.|||||.||.|.||||||||.||||||||
Sbjct 2441 CCTGCAGCACATCCCCCACGTCGTGCCTCACAAGAACAGAGTTCTTCTGTTCCGGAACATGGTTATCAAGGAGA 2514
Query 1994 AGGAGAAACTGGGGCTGGTGGAAACCAGCTCTGCCTCCCCGCATGTCACTCACATCACCATCCGCCGGTCCAGG 2067
|.|||||.||||||||.|||||.||||||||||||||.||.||.|||||.||||||||||||||..|||||.||
Sbjct 2515 AAGAGAAGCTGGGGCTTGTGGAGACCAGCTCTGCCTCTCCTCACGTCACCCACATCACCATCCGAAGGTCCCGG 2588
Query 2068 ATGCTGGAGGACGGCTACGAGCAGCTTAGGCAGCTCTCCCAGCACGCCATGAAGGGGGTCATCCGTGTGAAGTT 2141
|||.||||||||||||||||.|||||..|||||||.||||||||.|||||||||||.||.|||||.||||||||
Sbjct 2589 ATGTTGGAGGACGGCTACGAACAGCTCCGGCAGCTTTCCCAGCATGCCATGAAGGGTGTGATCCGAGTGAAGTT 2662
Query 2142 TGTCAATGACCTCGGGGTGGACGAAGCAGGGATTGATCAAGACGGTGTTTTTAAGGAGTTCTTGGAAGAGATCA 2215
||||||.|||||||||||||||||.||.||||||||.||.||.|||||.||.||||||||..||||||||||||
Sbjct 2663 TGTCAACGACCTCGGGGTGGACGAGGCTGGGATTGACCAGGATGGTGTCTTCAAGGAGTTTCTGGAAGAGATCA 2736
Query 2216 TCAAGAGAGTTTTTGACCCAGCACTCAATCTGTTCAAGACAACCAGTGGGGATGAGAGGCTGTACCCCTCACCC 2289
|||||||.||.||||||||.||||||||.||||
Sbjct 2737 TCAAGAGGGTGTTTGACCCCGCACTCAACCTGT----------------------------------------- 2769
Query 2290 ACATCCTACATCCATGAGAATTACCTGCAGCTCTTCGAGTTTGTGGGGAAGATGCTGGGGAAGGCTGTGTATGA 2363
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2364 GGGAATTGTGGTGGACGTGCCATTTGCATCCTTCTTCCTGAGCCAACTGCTTGGGCACCACCACAGCGTCTTCT 2437
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2438 ATAGCTCGGTGGATGAACTGCCTTCTCTGGACTCCGAGTTCTATAAAAACCTCACCTCCATCAAGCGCTATGAT 2511
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2512 GGGGACATCACTGACCTGGGCCTGACGCTGTCTTACGACGAGGACGTCATGGGTCAGCTTGTTTGCCATGAACT 2585
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2586 GATTCCTGGAGGGAAGACCATTCCTGTTACAAATGAAAATAAAATTAGCTACATCCATCTGATGGCACATTTTC 2659
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2660 GAATGCACACTCAAATAAAAAACCAAACAGCTGCCCTCATTAGCGGATTCCGTTCCATTATCAAACCCGAGTGG 2733
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2734 ATCCGAATGTTCTCAACTCCTGAACTGCAGCGTCTCATCTCTGGCGACAATGCTGAGATTGATCTGGAAGATTT 2807
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2808 AAAGAAGCACACAGTCTACTACGGTGGTTTCCATGGAAGTCACAGAGTCATCATCTGGCTCTGGGATATTCTGG 2881
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2882 CCTCCGACTTCACACCGGATGAGAGAGCTATGTTTCTGAAGTTCGTGACCAGCTGCTCCAGACCCCCGCTCCTG 2955
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 2956 GGATTCGCCTACCTCAAGCCTCCATTCTCCATCCGCTGCGTGGAGGTGTCGGACGATCAGGACACCGGGGACAC 3029
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 3030 TCTGGGCAGCGTCCTCCGGGGCTTCTTCACCATCCGCAAGCGGGAGCCAGGCGGCCGCCTGCCCACCTCCTCCA 3103
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 3104 CCTGCTTCAACCTGCTCAAGCTGCCCAACTACAGCAAGAAGAGCGTCCTCCGCGAGAAGCTGCGCTACGCCATC 3177
Sbjct 2770 -------------------------------------------------------------------------- 2769
Query 3178 AGCATGAACACGGGCTTTGAACTCTCC 3204
Sbjct 2770 --------------------------- 2769
