Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09473
- Subject:
- XR_001750145.1
- Aligned Length:
- 2753
- Identities:
- 1216
- Gaps:
- 1535
Alignment
Query 1 -------------ATGGCGGACTCTCAGCTGTTCTGTGTGGCGGAGGAACGCAGCGGCCACTGCGCCGTGGTGG 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCGACGGCGCGAATGGCGGACTCTCAGCTGTTCTGTGTGGCGGAGGAACGCAGCGGCCACTGCGCCGTGGTGG 74
Query 62 ACGGAAACTTCCTCTACGTGTGGGGGGGCTACGTGTCTATTGAAGACAATGAAGTATATTTGCCTAATGATGAA 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ACGGAAACTTCCTCTACGTGTGGGGGGGCTACGTGTCTATTGAAGACAATGAAGTATATTTGCCTAATGATGAA 148
Query 136 ATTTGGACCTATGATATTGATAGTGGGTTGTGGAGAATGCACCTCATGGAAGGAGAACTCCCAGCCTCCATGTC 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATTTGGACCTATGATATTGATAGTGGGTTGTGGAGAATGCACCTCATGGAAGGAGAACTCCCAGCCTCCATGTC 222
Query 210 AGGAAGCTGTGGTGCTTGCATTAATGGAAAGCTGTACATTTTTGGAGGATATGATGACAAATGATACAGCAATC 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 223 AGGAAGCTGTGGTGCTTGCATTAATGGAAAGCTGTACATTTTTGGAGGATATGATGACAAAGGATACAGCAATC 296
Query 284 GACTTTATTTTGTTAATTTACGAACAAGAGATGAAACCTACATTTGGGAGAAAATCACCGACTTTGAAGGGCAA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTTTATTTTGTTAATTTACGAACAAGAGATGAAACCTACATTTGGGAGAAAATCACCGACTTTGAAGGGCAA 370
Query 358 CCACCTACACCACGTGATAAACTTTCCTGCTGGGTATATAAAGACAGACTAATATATTTTGGTGGTTATGGGTG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCACCTACACCACGTGATAAACTTTCCTGCTGGGTATATAAAGACAGACTAATATATTTTGGTGGTTATGGGTG 444
Query 432 TAGGAGACACAGTGAACTCCAAGACTGTTTTGATGTTCATGATGCATCTTGGGAAGAGCAGATATTCTGGGGAT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TAGGAGACACAGTGAACTCCAAGACTGTTTTGATGTTCATGATGCATCTTGGGAAGAGCAGATATTCTGGGGAT 518
Query 506 GGCATAATGATGTCCACATATTTGACACAAAGACACAGACTTGGTTTCAACCAGAAATTAAAGGTGGAGTTCCA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGCATAATGATGTCCACATATTTGACACAAAGACACAGACTTGGTTTCAACCAGAAATTAAAGGTGGAGTTCCA 592
Query 580 CCACAGCCACGAGCCGCGCATACGTGTGCAGTTCTTGGAAATAAGGGTTATATCTTTGGCGGACGTGTTCTGCA 653
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCACAGCCACGAGCCGCGCATACATGTGCAGTTCTTGGAAATAAGGGTTATATCTTTGGCGGACGTGTTCTGCA 666
Query 654 AACTAGGATGAATGATTTGCACTATCTAAACCTAGACACCTGGACTTGGTCTGGAAGGATTACTATTAATGGAG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AACTAGGATGAATGATTTGCACTATCTAAACCTAGACACCTGGACTTGGTCTGGAAGGATTACTATTAATGGAG 740
Query 728 AAAGCCCAAAACATCGGTCATGGCATACTTTAACACCTATAGCTGATGATAAACTTTTCCTATGTGGTGGACTA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAGCCCAAAACATCGGTCATGGCATACTTTAACACCTATAGCTGATGATAAACTTTTCCTATGTGGTGGACTA 814
Query 802 AGTGCAGATAATATCCCATTAAGTGATGGTTGGATTCATAATGTCACAACAAATTGTTGGAAACAACTTACACA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGTGCAGATAATATCCCATTAAGTGATGGTTGGATTCATAATGTCACAACAAATTGTTGGAAACAACTTACACA 888
Query 876 TTTACCTAAAACAAGACCTAGGTTATGGCACACAGCCTGTTTGGGAAAAGAAAATGAAATAATGGTATTTGGTG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTTACCTAAAACAAGACCTAGGTTATGGCACACAGCCTGTTTGGGAAAAGAAAATGAAATAATGGTATTTGGTG 962
Query 950 GGAGCAAAGATGACTTACTTGCCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCTTAT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGAGCAAAGATGACTTACTTGCCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCTTAT 1036
Query 1024 TCACTACTCA---------------------------------------------------------------- 1033
||||||||||
Sbjct 1037 TCACTACTCAGTATCTGGTGTAAAGAGATCAAGAGCCATTGAAAAATTTGGAGCAAGAGAATAAGATGATCATA 1110
Query 1034 -------------------------------------------------------------------------- 1033
Sbjct 1111 TTACAAGTTAGACAATTCCTCTGGCAACAGAGTGGACGAAAAATTGAAGGGATATGTGACTGGGTAAAGAAAAT 1184
Query 1034 -GGTCATGCCTTGACTGCATTGGTAAAAATTCTATCATGTTAGAAAGTCAGATATCTTTATTACCTCCTAAACT 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGGTCATGCCTTGACTGCATTGGTAAAAATTCTATCATGTTAGAAAGTCAGATATCTTTATTACCTCCTAAACT 1258
Query 1107 TCTGCAACAAGTACTCAAAAAAATAACATTTTGGGCTGCAGCTAATCACCGAGAAGAACAAAGAGTCCAAAAAG 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTGCAACAAGTACTCAAAAAAATAACATTTTGGGCTGCAGCTAATCACCGAGAAGAACAAAGAGTCCAAAAAG 1332
Query 1181 AAGAAACAGAAAATAAATATCAGTGGATCAGTAGCAAT------------------------------------ 1218
||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAGAAACAGAAAATAAATATCAGTGGATCAGTAGCAATTAAATTGTTATATACTTTACATATTTAGTATGTTTT 1406
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1407 AACTTTTTAATCAGACTATACATTTACACTCCCAAATTGCAGGCTTTATTTAAAGGATAAAATTTAAAGGATAA 1480
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1481 AAAAACAGTCACTCTGTTAAGTGACTATATGCCATGGGATATATGGAAAAAAGATATTAATGCAGATTAATTTA 1554
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1555 TATTTGTAAACAAATTTCCTTACAAACTGCAGAACAAATATTCTTTCTGAAAGTAAGTACAGTTATAACAGATT 1628
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1629 TTAAATCAATGTGTATTCTTTACTGGAAAGATTACATACATTTGAGAATAAGAAATTACTCTCAAGAACTTCAG 1702
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1703 AAATCTGCAACATAATTTTATAAATATATAAATACATGTATGTATGTCAAAACACTACATATACACTTTCAGAA 1776
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1777 AGAATAAACTTTCTCAAGTCATTTTAAAGTTACCTAACGTTCTTCTTGAATAACTAATACAGTGGGTCAAATAT 1850
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1851 TATAAAATAGGCAAACACCAAAATGGTATTAAATATTGAACTCCTGACCTTTTCGACACTTACCTAGTAAAGTA 1924
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1925 TTCTTAGGCATCATCATAACTTTTCCTCACCTTTATTCGAATAGAGGAATAAATGTCTTCAGTTGTCTCTCCAT 1998
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 1999 TACCCCTAAGTTATTAGTTTGTCTAGTTTATATATAAAGACCATGTTTTAAAGTACATAAAGTGGAGGTTTATT 2072
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2073 TATCATACAGGCTTTGAAACATTAAGAAGCAGTATTTTTATTAACTTTTTGAGACATATTAAAATACATTTTGC 2146
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2147 CTTAGAAGACTGCTTCTAAAGTAATTTTTGTAAGTAATGAGATGGGATGGTAATCTAGTAATTTGACTTTATAG 2220
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2221 AAATCCCTCAGTTTGGCCCCCACCATTCTACAGAGTTGTACTCAAGACAGATACTGAAAAAATCTAATACCTTC 2294
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2295 CCTTGTATTTTCAGCATTACCATCTATACAGAAATGGAACACTGTATCTTTATATTCCTAAAAATGGTACTTTT 2368
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2369 GGCATAATTAAGAAATTTTTCTTCATATTATCACAATCATGCCCTTCCATTGAATTATTAATTACAATTAATTA 2442
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2443 CTAAAAAGCTTGGTATGTAAAATTATTCTCCACAATATTACCATGCAAGTTATCTCTGAAATTTAAAATGTTAA 2516
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2517 AGAAAAACATTTCTATATTGAAATATATATAATTTATAATGAAAATTATAGTAGTTTGTAGTATTTCATTGAAT 2590
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2591 TTTAGAGAGATATTTCATATATATGTACTGTATTTTGGATGTGTAAAGCTTCTATGTATTGAAATATTTTTTTA 2664
Query 1219 -------------------------------------------------------------------------- 1218
Sbjct 2665 CGTTTTATTTATTGTACAAAGTGTATATAATTACTGTTTTCTTTTTTGTCAGTGTAAAGCAGTCATTAGAATTG 2738
Query 1219 --------------- 1218
Sbjct 2739 ATTATACAAAAAATA 2753
