Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09473
Subject:
XR_001750145.1
Aligned Length:
2753
Identities:
1216
Gaps:
1535

Alignment

Query    1  -------------ATGGCGGACTCTCAGCTGTTCTGTGTGGCGGAGGAACGCAGCGGCCACTGCGCCGTGGTGG  61
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  AGCGACGGCGCGAATGGCGGACTCTCAGCTGTTCTGTGTGGCGGAGGAACGCAGCGGCCACTGCGCCGTGGTGG  74

Query   62  ACGGAAACTTCCTCTACGTGTGGGGGGGCTACGTGTCTATTGAAGACAATGAAGTATATTTGCCTAATGATGAA  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  ACGGAAACTTCCTCTACGTGTGGGGGGGCTACGTGTCTATTGAAGACAATGAAGTATATTTGCCTAATGATGAA  148

Query  136  ATTTGGACCTATGATATTGATAGTGGGTTGTGGAGAATGCACCTCATGGAAGGAGAACTCCCAGCCTCCATGTC  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTTGGACCTATGATATTGATAGTGGGTTGTGGAGAATGCACCTCATGGAAGGAGAACTCCCAGCCTCCATGTC  222

Query  210  AGGAAGCTGTGGTGCTTGCATTAATGGAAAGCTGTACATTTTTGGAGGATATGATGACAAATGATACAGCAATC  283
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  223  AGGAAGCTGTGGTGCTTGCATTAATGGAAAGCTGTACATTTTTGGAGGATATGATGACAAAGGATACAGCAATC  296

Query  284  GACTTTATTTTGTTAATTTACGAACAAGAGATGAAACCTACATTTGGGAGAAAATCACCGACTTTGAAGGGCAA  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GACTTTATTTTGTTAATTTACGAACAAGAGATGAAACCTACATTTGGGAGAAAATCACCGACTTTGAAGGGCAA  370

Query  358  CCACCTACACCACGTGATAAACTTTCCTGCTGGGTATATAAAGACAGACTAATATATTTTGGTGGTTATGGGTG  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCACCTACACCACGTGATAAACTTTCCTGCTGGGTATATAAAGACAGACTAATATATTTTGGTGGTTATGGGTG  444

Query  432  TAGGAGACACAGTGAACTCCAAGACTGTTTTGATGTTCATGATGCATCTTGGGAAGAGCAGATATTCTGGGGAT  505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TAGGAGACACAGTGAACTCCAAGACTGTTTTGATGTTCATGATGCATCTTGGGAAGAGCAGATATTCTGGGGAT  518

Query  506  GGCATAATGATGTCCACATATTTGACACAAAGACACAGACTTGGTTTCAACCAGAAATTAAAGGTGGAGTTCCA  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGCATAATGATGTCCACATATTTGACACAAAGACACAGACTTGGTTTCAACCAGAAATTAAAGGTGGAGTTCCA  592

Query  580  CCACAGCCACGAGCCGCGCATACGTGTGCAGTTCTTGGAAATAAGGGTTATATCTTTGGCGGACGTGTTCTGCA  653
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCACAGCCACGAGCCGCGCATACATGTGCAGTTCTTGGAAATAAGGGTTATATCTTTGGCGGACGTGTTCTGCA  666

Query  654  AACTAGGATGAATGATTTGCACTATCTAAACCTAGACACCTGGACTTGGTCTGGAAGGATTACTATTAATGGAG  727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AACTAGGATGAATGATTTGCACTATCTAAACCTAGACACCTGGACTTGGTCTGGAAGGATTACTATTAATGGAG  740

Query  728  AAAGCCCAAAACATCGGTCATGGCATACTTTAACACCTATAGCTGATGATAAACTTTTCCTATGTGGTGGACTA  801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AAAGCCCAAAACATCGGTCATGGCATACTTTAACACCTATAGCTGATGATAAACTTTTCCTATGTGGTGGACTA  814

Query  802  AGTGCAGATAATATCCCATTAAGTGATGGTTGGATTCATAATGTCACAACAAATTGTTGGAAACAACTTACACA  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGTGCAGATAATATCCCATTAAGTGATGGTTGGATTCATAATGTCACAACAAATTGTTGGAAACAACTTACACA  888

Query  876  TTTACCTAAAACAAGACCTAGGTTATGGCACACAGCCTGTTTGGGAAAAGAAAATGAAATAATGGTATTTGGTG  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTTACCTAAAACAAGACCTAGGTTATGGCACACAGCCTGTTTGGGAAAAGAAAATGAAATAATGGTATTTGGTG  962

Query  950  GGAGCAAAGATGACTTACTTGCCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCTTAT  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGAGCAAAGATGACTTACTTGCCTTGGATACAGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCTTAT  1036

Query 1024  TCACTACTCA----------------------------------------------------------------  1033
            ||||||||||                                                                
Sbjct 1037  TCACTACTCAGTATCTGGTGTAAAGAGATCAAGAGCCATTGAAAAATTTGGAGCAAGAGAATAAGATGATCATA  1110

Query 1034  --------------------------------------------------------------------------  1033
                                                                                      
Sbjct 1111  TTACAAGTTAGACAATTCCTCTGGCAACAGAGTGGACGAAAAATTGAAGGGATATGTGACTGGGTAAAGAAAAT  1184

Query 1034  -GGTCATGCCTTGACTGCATTGGTAAAAATTCTATCATGTTAGAAAGTCAGATATCTTTATTACCTCCTAAACT  1106
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGGTCATGCCTTGACTGCATTGGTAAAAATTCTATCATGTTAGAAAGTCAGATATCTTTATTACCTCCTAAACT  1258

Query 1107  TCTGCAACAAGTACTCAAAAAAATAACATTTTGGGCTGCAGCTAATCACCGAGAAGAACAAAGAGTCCAAAAAG  1180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCTGCAACAAGTACTCAAAAAAATAACATTTTGGGCTGCAGCTAATCACCGAGAAGAACAAAGAGTCCAAAAAG  1332

Query 1181  AAGAAACAGAAAATAAATATCAGTGGATCAGTAGCAAT------------------------------------  1218
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct 1333  AAGAAACAGAAAATAAATATCAGTGGATCAGTAGCAATTAAATTGTTATATACTTTACATATTTAGTATGTTTT  1406

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1407  AACTTTTTAATCAGACTATACATTTACACTCCCAAATTGCAGGCTTTATTTAAAGGATAAAATTTAAAGGATAA  1480

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1481  AAAAACAGTCACTCTGTTAAGTGACTATATGCCATGGGATATATGGAAAAAAGATATTAATGCAGATTAATTTA  1554

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1555  TATTTGTAAACAAATTTCCTTACAAACTGCAGAACAAATATTCTTTCTGAAAGTAAGTACAGTTATAACAGATT  1628

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1629  TTAAATCAATGTGTATTCTTTACTGGAAAGATTACATACATTTGAGAATAAGAAATTACTCTCAAGAACTTCAG  1702

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1703  AAATCTGCAACATAATTTTATAAATATATAAATACATGTATGTATGTCAAAACACTACATATACACTTTCAGAA  1776

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1777  AGAATAAACTTTCTCAAGTCATTTTAAAGTTACCTAACGTTCTTCTTGAATAACTAATACAGTGGGTCAAATAT  1850

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1851  TATAAAATAGGCAAACACCAAAATGGTATTAAATATTGAACTCCTGACCTTTTCGACACTTACCTAGTAAAGTA  1924

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1925  TTCTTAGGCATCATCATAACTTTTCCTCACCTTTATTCGAATAGAGGAATAAATGTCTTCAGTTGTCTCTCCAT  1998

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 1999  TACCCCTAAGTTATTAGTTTGTCTAGTTTATATATAAAGACCATGTTTTAAAGTACATAAAGTGGAGGTTTATT  2072

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2073  TATCATACAGGCTTTGAAACATTAAGAAGCAGTATTTTTATTAACTTTTTGAGACATATTAAAATACATTTTGC  2146

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2147  CTTAGAAGACTGCTTCTAAAGTAATTTTTGTAAGTAATGAGATGGGATGGTAATCTAGTAATTTGACTTTATAG  2220

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2221  AAATCCCTCAGTTTGGCCCCCACCATTCTACAGAGTTGTACTCAAGACAGATACTGAAAAAATCTAATACCTTC  2294

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2295  CCTTGTATTTTCAGCATTACCATCTATACAGAAATGGAACACTGTATCTTTATATTCCTAAAAATGGTACTTTT  2368

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2369  GGCATAATTAAGAAATTTTTCTTCATATTATCACAATCATGCCCTTCCATTGAATTATTAATTACAATTAATTA  2442

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2443  CTAAAAAGCTTGGTATGTAAAATTATTCTCCACAATATTACCATGCAAGTTATCTCTGAAATTTAAAATGTTAA  2516

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2517  AGAAAAACATTTCTATATTGAAATATATATAATTTATAATGAAAATTATAGTAGTTTGTAGTATTTCATTGAAT  2590

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2591  TTTAGAGAGATATTTCATATATATGTACTGTATTTTGGATGTGTAAAGCTTCTATGTATTGAAATATTTTTTTA  2664

Query 1219  --------------------------------------------------------------------------  1218
                                                                                      
Sbjct 2665  CGTTTTATTTATTGTACAAAGTGTATATAATTACTGTTTTCTTTTTTGTCAGTGTAAAGCAGTCATTAGAATTG  2738

Query 1219  ---------------  1218
                           
Sbjct 2739  ATTATACAAAAAATA  2753

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