Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09696
- Subject:
- NR_029418.1
- Aligned Length:
- 2620
- Identities:
- 1255
- Gaps:
- 1217
Alignment
Query 1 ATGGGTGTGATAGGTATAC------AGCTGGTTG---TTACCAT----GGT---GATGGC-CAGTGTCATGCAG 57
||| .|||..|.| |||.||..| ||.||.| ||| ||..|| |.||.| |||||
Sbjct 1 --GGG-----CAGGACTTCCGGCCGAGCCGGAAGACCTTTCCCTTCGCGGTTTCGAGAGCTCCGTTT--TGCAG 65
Query 58 A-----------AGATTAT--AC-----------CTC---ACTATTCTCTTGCTCGA--------TGGCTACTC 96
| |||||.| || ||| ||| .|||.|..|.||| ||||
Sbjct 66 AACCTGAAGGGGAGATTCTGGACGGTCCCGGGGACTCTAGACT-GTCTGTCCCACGACCTGTTCTTGGC----- 133
Query 97 TGTAATGGCAGTTTGAGGTGGTATCAACATCCTACAGAAGAAGAATTAAGAATTCTTGCAGGGAAACAACAAAA 170
||.|| |||||||.|||||||||||||||.|.|||||||||||||||||.|||||||||||.||.||.||
Sbjct 134 -GTTAT----GTTTGAGATGGTATCAACATCCTTCCGAAGAAGAATTAAGAATCCTTGCAGGGAAGCAGCAGAA 202
Query 171 AGGGAAAACCAAAAAAGATAGGAAATATAATGGTCACATTGAAAGTAAGCCATTAACCATTCCAAAGGATATTG 244
|||.||||..||||||||.||.|||||.|||||.||.|||||||.|||||||.|||||||||||||.||.||||
Sbjct 203 AGGAAAAAGTAAAAAAGACAGAAAATACAATGGCCATATTGAAAATAAGCCACTAACCATTCCAAAAGACATTG 276
Query 245 ACCTTCATCTAGAAACAAAGTCAGTTACAGAAGTGGATACTTTAGCATTGCATTACTTTCCAGAATACCAGTGG 318
||||||||||||||||.|||||.||||||||||||||.|||||||||.||||||||||.|||||||||||||||
Sbjct 277 ACCTTCATCTAGAAACCAAGTCTGTTACAGAAGTGGACACTTTAGCACTGCATTACTTCCCAGAATACCAGTGG 350
Query 319 CTGGTGGATTTCACAGTGGCTGCTACAGTTGTGTATCTAGTAACTGAAGTCTACTACAATTTTATGAAGCCTAC 392
||||||||.|||||.|||||||||||..||||.|||.||||||||||.|||||.||||..||.|||||||||||
Sbjct 351 CTGGTGGACTTCACGGTGGCTGCTACCATTGTCTATTTAGTAACTGAGGTCTATTACAGCTTCATGAAGCCTAC 424
Query 393 ACAGGAAATGAATATCAGCTTAGTCTGGTGCCTACTTGTTTTGTCTTTTGCAATCAAAGTTCTATTTTCATTAA 466
||||||||||||||||||||||||.||||||||.||.|||||||||||||||||
Sbjct 425 ACAGGAAATGAATATCAGCTTAGTTTGGTGCCTCCTGGTTTTGTCTTTTGCAAT-------------------- 478
Query 467 CTACACACTATTTTAAAGTAGAAGATGGTGGTGAAAGATCTGTTTGTGTCACCTTTGGATTTTTTTTCTTTGTC 540
||||||||||.||||||||.||.|||||||||||||||||||||||||||||.||.
Sbjct 479 ------------------TAGAAGATGGAGGTGAAAGGTCAGTTTGTGTCACCTTTGGATTTTTTTTCTTCGTT 534
Query 541 AAAGCAATGGCAGTGTTGATTGTAACAGAAAATTATCTGGAATTTGGACTTGAAACAGGGTTTACAAATTTTTC 614
||||||||||||||.|||||.||||||||.||.||.|||||.|||||.||||||||||||||||||||||||||
Sbjct 535 AAAGCAATGGCAGTTTTGATCGTAACAGAGAACTACCTGGAGTTTGGCCTTGAAACAGGGTTTACAAATTTTTC 608
Query 615 AGACAGTGCGATGCAGTTTCTTGAAAAGCAAGGTTTAGAATCTCAGAGTCCTGTTTCAAAACTTACTTTCAAAT 688
|||||||||.||||||||||||||||||||.|||||||||||||||.|.|||||||||||||||||||||||||
Sbjct 609 AGACAGTGCAATGCAGTTTCTTGAAAAGCAGGGTTTAGAATCTCAGGGCCCTGTTTCAAAACTTACTTTCAAAT 682
Query 689 TTTTCCTGGCTATTTTCTGTTCATTCATTGGGGCTTTTTTGACATTTCCTGGATTACGACTGGCTCAAATGCAT 762
|||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 683 TTTTCCTGGCTGTTTTCTGTTCACTCATTGGGGCTTTTTTGACATTTCCTGGATTACGGCTGGCTCAAATGCAT 756
Query 763 CTGGATGCCCTGAATTTGGCAACAGAAAAAATTACACAAACTTTACTTCATATCAACTTCTTGGCACCTTTATT 836
|||||||||||||||.|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 757 CTGGATGCCCTGAATATGGCAACAGAAAAAATTACACAAACATTACTTCATATCAACTTCTTGGCACCTTTATT 830
Query 837 TATGGTTTTGCTCTGGGTAAAACCAATCACCAAAGACTACATTATGAACCCACCACTGGGCAAAGAAAGTATCC 910
|||||||.||||||||||.||||||||||||||||||||.||.|||||||||||..||||.|.|||.|||.|||
Sbjct 831 TATGGTTCTGCTCTGGGTGAAACCAATCACCAAAGACTATATCATGAACCCACCGTTGGGTAGAGAGAGTGTCC 904
Query 911 CTTTAATGACAGAAGCCACATTCGATACTCTGCGACTCTGGTTAATAATCCTGCTGTGTGCTTTGCGGTTGGCC 984
||.|||||||||||||||||||.||||||||.|||||||||||||||||||||||.||||.|||||||||||||
Sbjct 905 CTCTAATGACAGAAGCCACATTTGATACTCTTCGACTCTGGTTAATAATCCTGCTCTGTGTTTTGCGGTTGGCC 978
Query 985 ATGATGCGTAGTCACCTGCAAGCTTATTTAAATTTAGCCCAAAAATGTGTGGATCAGATGAAGAAAGAAGCGGG 1058
||||||||.||||||||||||||.|||||||||||.|||||.||||||||||||||.||||||||||||||.||
Sbjct 979 ATGATGCGAAGTCACCTGCAAGCATATTTAAATTTGGCCCAGAAATGTGTGGATCAAATGAAGAAAGAAGCTGG 1052
Query 1059 GCGAATAAGCACGGTTGAGCTACAGAAAATGGTGGCTCGAGTCTTTTATTATCTTTGTGTCATTGCACTGCAGT 1132
.||||||||.||.|||||||||||||||||||||||.|||||||||||.||.||.|||||||||||.|||||||
Sbjct 1053 CCGAATAAGTACAGTTGAGCTACAGAAAATGGTGGCGCGAGTCTTTTACTACCTGTGTGTCATTGCCCTGCAGT 1126
Query 1133 ATGTGGCGCCTCTGGTAATGCTGCTTCACACAACTCTGCTTTTGAAAACACTAGGTAATCATTCCTGGGGTATT 1206
|||||||.||||||||||||||||||||.|..|||||||||.||||||||||||||||||||||||||||.|||
Sbjct 1127 ATGTGGCACCTCTGGTAATGCTGCTTCATATGACTCTGCTTCTGAAAACACTAGGTAATCATTCCTGGGGAATT 1200
Query 1207 TATCCAGAATCTATCTCTACCTTACCAGTGGATAATAGTCTACTGTCCAATTCTGTTTACTCTGAATTACCATC 1280
|||||||||.|...||.|.||||.|||||||||||||.|||.|...||||.||.|.||||.|||||.|||||||
Sbjct 1201 TATCCAGAAGCCGCCTTTCCCTTGCCAGTGGATAATAATCTCCCCGCCAACTCGGCTTACCCTGAACTACCATC 1274
Query 1281 AGCTGAAGGGAAAATGAAGGTAACTGTTACACAAATAACAGTGGCACTGAGCAGCTTAAAAAATATTTTTACTC 1354
|.||||.|||||.|||||||||||||||||||||||.||||||||.|||||||||||||||||.||.||.||.|
Sbjct 1275 ACCTGATGGGAAGATGAAGGTAACTGTTACACAAATCACAGTGGCCCTGAGCAGCTTAAAAAACATCTTCACGC 1348
Query 1355 CTCTTCTTTTTCGAGGACTTCTGTCTTTTCTGACCTGGTGGATTGCTGCTTGCCTCTTTTCTACAAGCCTTTTT 1428
||||.||||||||||||||||||||.|||.||||.|||||||||||.|||||||||||||||||||||||||||
Sbjct 1349 CTCTCCTTTTTCGAGGACTTCTGTCATTTTTGACATGGTGGATTGCAGCTTGCCTCTTTTCTACAAGCCTTTTT 1422
Query 1429 GGGCTTTTCTATCACCAGTATCTGACTGTGGCA----------------------------------------- 1461
||||||||||||||.||||||.||||.||||||
Sbjct 1423 GGGCTTTTCTATCATCAGTATTTGACAGTGGCATGAATTTCAGTCAAAAACGGATATCCAAGTCACACTTTAAA 1496
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1497 TTCAAATATCTGTGCCCTTGAAGGATTGACAAAAGAAGAATGCAAATAGAACGGAGAAAAAAATTATTGGAGTG 1570
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1571 TTTTGTTTTGAATGCTTCCTCTGTACTCTCAGGGTGAATTAATGTTGTAATATTTAAAACTCATGAGATAGGTT 1644
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1645 GTTACACTGTTACACACTGTGGCATTGGAATTGTAACTCATTGAGAGAACTAATGTGAGAGGGCTCTCTGCAGG 1718
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1719 GGTAATCCTTCTGATTATCTTGGTTTACAGTTGCAAACCTCCAACAGTCTGTTAGACTTCTTCTAGGACTCCAG 1792
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1793 TTACTGACTGCTTTTCATGGTGTTGTGGTACTGTTACTACTCATAGTTGCTGCCTACAGAACAATCTTCAAACT 1866
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1867 GAGCCATGCTCGAGGGAAGGGAAAGGAACGAAAATTACTTCTGTTGGTAATGTATTAGTCTTAAAAAAAAATCC 1940
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1941 AACAGAAAGGAAGAGAAAGCTACTGTATATTACAGTAAGAAAAGCTGCATAGTCATTTTAAATTGAATGGAGAT 2014
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2015 ATAAATTACCTATTGTCTACAAGTACTGTTACTTGAGAGTAGCAGGAATATTCTTTTAAAGTGAATGCCACCCA 2088
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2089 GCTTGAAAGTTCTTTTTAAATGATTGGCCATATGAACATCAGCGGTCTCACTGTTAGTTTTGGGCCTTGCTGTA 2162
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2163 TTTTATTTTTTCTTTGATTTTAAATAGTTATGTTTAATCTAAAAATATTTATCAATACTGATCAAATTTGAGAA 2236
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2237 TTACTTTGCAATCCTGCTGACTACGTGTATGTATTGTGTATATATTATATATTAAATATATAATATATTGAGGT 2310
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2311 TATAAAAGATGAAAATATTGAATCCTTATAATATTTTAAGTTTCAGAACGTACGTTAAACAATGATTTGAATGA 2384
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2385 GATGTATTTGTATCTGGAAATTTCTGTTTGGAATGAGATTAAAATACATTTTTTTAAAGCTCAACAGAGTGTAA 2458
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2459 TTTATTTGTTGTACATATATGATAATAGTACTTAAAATGTCATGAAGATTAGTTGATTTCTCACAAATTAAATT 2532
Query 1462 ------------------------------ 1461
Sbjct 2533 TCATTTTCTGTTAAAAAAAAAAAAAAAAAA 2562
