Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09759
- Subject:
- XR_937828.3
- Aligned Length:
- 6452
- Identities:
- 925
- Gaps:
- 5525
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTAAAAGTGCTGGGAGCAGGTGAGCCACAGGCAACTCTTCTCTCGGAACCTGCACACAAACTGGGGCTATAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTCTCCAAGGACAGATGGCAGTGGAGCTAGACCTGAGTAGGGGGCAGGGAGTTCAGGACAACCCTCCTGTAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGGGGGTGGTCTGGGGGTAAGGCTGGGGCTTCCTGGGAAAAGGAAGGCCATGAGAAGGCAGAGAAGTAGGCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCTGGGTTCTTGCAGAAAGCATCAGTGCCTACAAATGGAGCTCCACCCTTCAGTCTGTGTCGTGTTCAGTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACAAAGCTACCACCTGTCACCAGAGCCTACTGCTGCTCTCCACTCAACTGGCCTCTGCTGCCAGGCCACTGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCTCTGCTTCCGACTTTGTCTTCTTTCTCCCTTTCCCTCCTTCCCTCATACATTGCTTTCTCTCCCTCTCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCGTGTCTCTGACATCTCTCACTTCCTTTTAGATGAATCTACTTTAGGTTCATTCCTATATTTAGCATTTATGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAGTCTACTTCCAGAAATGACTTTAGACTGCCTTTCACATAAAATCACAAAACTACAGGACAGTACAAACAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGCCAGAGAAATCTGGGTCAAAGAAAGGAATAGGAAAGAAAGTTTCTGTAGTCAAGCACCTGAACAGGCCCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCTCACAGGCAGCCAATGTAAAGAGGGAAACACAGTGAGTTATGCAGTTCCCAGTGTCCAGTTAAAGGAAGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CACATGCTAGTCATGTGAGACAACCTTTTATTGGGACATCAGGTTCTAGAACTAATTCTAAAGAAGTATCAGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAATATACATAATTTGTCTTTCTTAGTAATTTGGCTTCAAAGACAAATTTTTGACCACACCTCCGTTTTCTCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTCAGACTTCTCTCCCTTCTAAGCAGGCTTCTCTGTTGCTCCATTTGCTTCATACATACTTGACCTCTCTTTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TATTCCCCATCACTTTTGTGCTGAAGCTAATCATATTTATGTCTGTCTTTCTCTACTTTTCCCTAATTCCCTCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCTCCTGACTCCTGTAGACATTCCCAATGATACCCACCGTCATACATTTAGGCTTTTCTTGCCTTTCCCTGAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCCTGTATTTATTAATGCATATATTTCCCCTGCTTGTTGTACAAGTAAGTTACTCTTTTCCTTTAATCTGTAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATTCATGAAATTCGGGGCCAGGGAAACAGTTTAGCCTTAGGGAAGGGAAAACACTAAGTGAAACTGTTTACAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AACCTCATACAACCTTCTGTCCCATCTCCTGGTTCAGCCTAGGTGTTTCACTGGTCCTCTATGAATCCCAGCAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTATAATCCCAGTCTTTTATCACTCAGGTGCTAGGAAAAAAAACATAGACTCAAGACCCAAGATTCAATGGACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGAGAAAGGGGGGCGGTGATCAGGTCACCAGTGACCCCAACCTATGCTCTCGGTCTTTCCTGGAGGCTGCCAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCCAGCCCTCATCCTCCCTTGCTCACAAAGTTACAGGGTAGGCACCTGTCAGGACAGAACAGCAGCAGCGCTAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGCCCAGAGGTTATACATTTCAACAGAACAGGGATCCTTGGCTACTGTAGAAGCAGTCCTGTATGGAGACCTTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GACCAGCAGGGGAAGATCTATGGGCATGGGAGGTGGGCGTTGGAAAGGCTGAGTAGGAATGGTGCCTGGCACCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTGAACCATGATCTGAGCCTCCCTGGAGAAGGTATTTTATATGTCTGCTGCCAGCTGCTGGTCTCCACACCCTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACCGTTCTCAACCCCCCTGCAGGGAGAAGGCCTCCTGGGCACTGTCCTTCCACCTGTGCCAGCCACCCCCTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCCACTGCTGAATGAAGGCCATTTCAAGCGCTGCTTCTCACTCCATTCCTCTCAGCTGTTATTGCTGCAGGGCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGCCCTTTTTAGTGCTGTGCTCGTCCAGCTCACCACCACAGCCCCTCTCAGCCCTCAGTAGGTGGGAGGGGCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCTGCCTCTTTAGGCCAGTTGCATCCTCCATTTATCCAAACCACTCCTCTCCTCCCAGTGGAGTGGGGTTCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCAGTACAGCCCTACTGCATCATCTGCGTCAGCCGGTCCTAGCCCATCTGCAGGGTGAAAGAACTCATCAAGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCCTTCTGCCCTTGTAAGCCCATCCCAGCTACTTGTAACCATCTCTAAGGGCAATGGCATTGCTCCCTACCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTCATCTGCATGAGCTACTCTTGGCTTCCTTAAAGGGTCAAGAAAGCAATTTTTCTGCTTACTAGATTCATTGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATCAGCTGTGTGAGCCCCAAAGTGGGACAAGGGTGTCTCCTTCATTACTTAAAGATATTCATGAGGGTGGGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTACAGATGTTGGGGAGCAAGGGCTAGGATCACTTTTTAAAAAATCACCACTTGTGGCTGTCCCAGAGTGCGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTGTACATCCTCCCCACCTCATAACGCAGCCACTGAGGAAGAGTGGTTTTCCTAAGAAGACATTGCTGGAGTTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACTTTCTTCTGTCCAAACAAACAAACAAAAACTAAACACACACACAAACCCCCAGAAACCCACAATATGTACAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCTAAGGAAAAACTAGCACCCTTCTGTCCACTCAGCAATAAGAGGGATCTCTTCCCACCTACCCTACCTACTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TACCCCCAACCCCCTTCCCCATTAATGTGAGTAATGAATTAGCCTGACCACAGGTGGTCACTGTAGGCTAATGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAATACCCAAGGGAGGGCAAAGCCCCCCATCAGATGCATGAATGTTTGCGAATGTTGACTGCCACTGCCCCAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACACTGTGTCTTTATAGAATTCCCCTTTGCCCACCCTCTTCCTGTCTCCACCTGGACACAACTTGCTCAAAGGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGTGACTTGTGGGCCATTCATCTACAACCAAGTCCTGATGGAGCAAGAGGCCCACGCCTAGGGGATGCAAGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CAACCCGTTTCTTAAATGTTACCAGTCCCAGCCAATCTTACGGTGACATTACAGTTAAATTTCCCAATTGAAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAAGCAAACAGACACTCAAACTGGTCCTGTAATTGTTGCTAGACTTTATGTGTTGTACAACTAAACATTGCTGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTGAACAGTAACTGCCTGGCCTGTCTTATTTGTGCTCCTTGACCAAATCAGCCATTATGTCATCTCACCCATGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGGAGGGTGAGACTCTCTTGGTAAGAAATAGCCACAGATATTAGAGATGAAAACACTTTGTGAGGTCAGTTCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCTTCAGTTGGCGTCAGGTCGGGCCTCAGTCATTATTTTCTAGTGTTTCATAACCAAAGTGAGTAATGGATGGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGGTTGAGGTGGGAAGATGGCTTGAGCATGGGAGGTTGGAGGTGCAGTGAGCTGAGATCATTCCTGACAGGACC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AACCCAAGTCCATACCTAAAGGCAGGGGGCTAAGGGGGCAGGTGAGGTCGGGAGGCCACTCACCTATCACTCAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCCTTCGCGCTCGAGCCAATTCTCAGGGCCCGCCTCTTTCTCCCCTTTCTCGGCGGGGGCCTCTACCCTGACTC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CGCCCCGCTCCCCGGGCACTGCCCCACCACGTGACCCGGTCTCGCTCCTCCTCCTCCTCCTCCTTACGTCATAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TCTCCGCCCTCCCCTTCAGAACCGCGCCCCACAGCTCGGCGCAGGTCCCGCCCCTTTCCATCTACGGGGCGGCA 3700
Query 1 ----------------ATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 GGAGGCCCGAAGCAAGATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 3774
Query 59 AAA----------------------------------------------------------------------- 61
|||
Sbjct 3775 AAAGGTGCCTGAGGGGAAGCACGGCGTGCTGTCGGAGGAGAGGAGACGAATGAGATAGACATGGCGGCTCGCAA 3848
Query 62 -------------------------------------------------------------------------- 61
Sbjct 3849 ACTCTCAGCGAGTCAGGGACTTTGCCGCCTTTTTTGGGCGCGGCGCTCTTAGCTCCGCCCCCGACCTTTGGGAG 3922
Query 62 -------------------------------------------------------------------------- 61
Sbjct 3923 CGCGCGCCCCTCACTGGTGTTCCGGCATGTGGAGGTGGCGGAGGCCGGAACGCGTGGCCTCGCGCGTTTGAGGG 3996
Query 62 -------------------------------------------------------------------------- 61
Sbjct 3997 GTGGGGGTGGGAATGCGCCTTTTCAAGGCGCGGGGCCCAGACGCATGTCTCCTCAGGGCGGGGCGGGGAGGGGG 4070
Query 62 -------------------------------------------------------------------------- 61
Sbjct 4071 TGCGAGACGCGTGTGTCCTTCGAAGAGAGGCCGGAGCTGACCGGCGGTTGTGAGCAGCCGGGGGCCTTCGGTGG 4144
Query 62 -----------------------------------------------------GTCTCTTGAAGCGGTCTCCGA 82
|||||||||||||||||||||
Sbjct 4145 CAGCGTGGCTGCCCTTGGGTGCCTGCGACTTTGTTGGATGAGGACAGGTACTGGTCTCTTGAAGCGGTCTCCGA 4218
Query 83 ATGTGGAGCTCTCCTTCCCACAGCGATCAGAAGGCTCAAATGTCTTTAGTGGTAGAAAGACAGGAACATTGTTT 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 ATGTGGAGCTCTCCTTCCCACAGCGATCAGAAGGCTCAAATGTCTTTAGTGGTAGAAAGACAGGAACATTGTTT 4292
Query 157 CTCACTTCATACCGGGTGATTTTCATAACTTCATGCTCCATCAGTGATCCCATGTTGTCTTTTATGATGCCATT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293 CTCACTTCATACCGGGTGATTTTCATAACTTCATGCTCCATCAGTGATCCCATGTTGTCTTTTATGATGCCATT 4366
Query 231 TGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACTTCATTAAGGGAACTATTCAGGCAG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367 TGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACTTCATTAAGGGAACTATTCAGGCAG 4440
Query 305 CTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGAAATGGAGGTGCCATTGAATTTGCC 378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 4441 CTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGAAATGGAGATGCCATTGAATTTGCC 4514
Query 379 CAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAGAACCTTAAATGACTGGTTCAGCTC 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4515 CAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAGAACCTTAAATGACTGGTTCAGCTC 4588
Query 453 TATGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACTCCACAGATGCCTTGTTCAGTTATTGTCTATG 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589 TATGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACTCCACAGATGCCTTGTTCAGTTATTGTCTATG 4662
Query 527 GAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCACCTGCAGGATATGGAGCCCAACCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4663 GAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCACCTGCAGGATATGGAGCCCAACCC 4736
Query 601 GTAGGAAATGAAGGCCCGCCTGTGGGATACAGAGCCTCACCTGTGCGATATGGAGCCCCACCTCTTGGATACGG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4737 GTAGGAAATGAAGGCCCGCCTGTGGGATACAGAGCCTCACCTGTGCGATATGGAGCCCCACCTCTTGGATACGG 4810
Query 675 AGCCCCACCTGCAGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCACCTCTTGGATATGGAACCCCACCTC 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4811 AGCCCCACCTGCAGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCACCTCTTGGATATGGAACCCCACCTC 4884
Query 749 TCGGATATGGAGCCCCACCTCTCGGATATGGAGCCCCACCTGCAGGAAATGAAGGCCCGCCTGCGGGATACAGA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4885 TCGGATATGGAGCCCCACCTCTCGGATATGGAGCCCCACCTGCAGGAAATGAAGGCCCGCCTGCGGGATACAGA 4958
Query 823 GCCTCACCTGCTGGATCAGGAGCCAGGCCTCACGAATCTACAGCAGCCCAGGCTCCTGAAAACGAGGCTTCTCT 896
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 4959 GCCTCACCTGCTGGATCAGGAGCCAGGCCTCAGGAATCTACAGCAGCCCAGGCTCCTGAAAACGAGGCTTCTCT 5032
Query 897 TCCCTCTGCCTCCTCTTCTCAGGTCCATTCT------------------------------------------- 927
|||||||||||||||||||||||||||||||
Sbjct 5033 TCCCTCTGCCTCCTCTTCTCAGGTCCATTCTTAACCTTCTAAGATGTAAACCTTGAAGACTCACCAAGCAAAGA 5106
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5107 GGTACCCTAAAATTGAAGTCAGGATAAGGAGGACGACTCAGCTTAGAGTCATTGATTGATCTGCATTGTGAAAA 5180
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5181 TTAGGAAACCAGATGCTCCCATGTTCTCAAGGACAGCCTTTCTTAAGGAAGTCAGTACGTGGGCAACAGTGATG 5254
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5255 AGAGGAAGAGAGGAGAGACTCAACCAACTAGAGCAGGGATAAGGTTTCCCTTGTTCAGCTTTTCAGTGTCTGCT 5328
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5329 GGAATGTGATGATACTCTAGCTCACACATCAGAAGAGCATGTGCAGGAAGAGAGATGAAATAATGGTACACGTT 5402
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5403 GATGGTTACTGGAGCTGGATGCTGGGTACATGGAGGTTCACTCTACCATTTTATTTTTGTATTTGAAAGTTTTC 5476
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5477 ATGATAAAAAGTTTTTAAAAAGAGAAAGGGTACCTTGCGTCCAAACAAGTCTGTATTTAACTGAAAAAAAAAAA 5550
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5551 TAATTGCATTCCTAACTGGCCTTGAATAGAAGGGAATAAATGTCCTGGGAGATAGATGGCATGTTTGTTGAAAG 5624
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5625 AATGAAGGGTGAAGAGATAGGATCAATCAGGCACCCCCAGGACAAAAGGAAAACTTATACAGCAAGTAAAGACA 5698
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5699 TGTAGCTATCTTGGGCTGAAAGGTAAGGGAATTAATTGGTCAAGTCCAGGCTCAACTCTGGCCCCCAACTCCCA 5772
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5773 AGTCCATGGTCTCAACTCATTTCCCACAAAGCCTTCCTGGAGCTAGCAAGAGAAGGTGTTCCCACCTGAGACTA 5846
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5847 TTCCATTTTGCCTGAACAGCACTATGAACAAGACCCAAAGGCAGAGCTATGCACGGAGGGGCAGGCCTGGGATG 5920
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5921 AGGTAGGCTTCTGTCCTAAGTTTCTCAACAGCCTCAAGACATCAACTGGGGAAAGGAACTTTCTCTGGTGACCC 5994
Query 928 -------------------------------------------------------------------------- 927
Sbjct 5995 TATACTTAACCAGTAAAGCTTCAATCATCTTAAATGATGTAACAAAATGTGCATATGTAAGTTTTTACACCATA 6068
Query 928 -------------------------------------------------------------------------- 927
Sbjct 6069 CCCTAAATACAAGGACCTCAGAACCCTGAGGAGTATGGGAGATCCACCCAGAAAATACTCCTTGGGCAGCACAG 6142
Query 928 -------------------------------------------------------------------------- 927
Sbjct 6143 TGCAAGGCCTGGGGCACTGGGTGCTCCTGCATTCAAAGCCCAAGGAGGACCTAGCTAGGTTGCTCTGCCACTAG 6216
Query 928 -------------------------------------------------------------------------- 927
Sbjct 6217 CTCTCTCCAAAGGGGAGAGCCACCAGGGAAGACAAGTGCCCTGTAGCCTTGGCTAAAAGAGGAGGGCTTGGGAA 6290
Query 928 -------------------------------------------------------------------------- 927
Sbjct 6291 ATACGGACCAAAGCAAGACAGGCAAGAACCCATCATTCCTTCACTTTGACTGTTACCCCTGTCCTTAGGAAGAG 6364
Query 928 -------------------------------------------------------------------------- 927
Sbjct 6365 GGACAGGAAATCAATTTTAAGACACAACTCCTGGACAGGTTTGTGGACACATCTGGGGAATATGAACCTCCTTT 6438
Query 928 -------------- 927
Sbjct 6439 GCAGCCAGGTTGGG 6452
