Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09869
- Subject:
- NM_001033272.2
- Aligned Length:
- 3733
- Identities:
- 1686
- Gaps:
- 1778
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACAACAGCCCAGGATGGCCATGGGCAAGGTGCCACAGCCACTTGTTCAGCCTCCAACCCAAAGGCCCCGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATGGTGACATCCTCAGCATGTCAGAATGGAGGCTGCAAAAGCAGCCCCAGCAGTGATCCCGAAGCCGGGGAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCAGGCTCAGCCCATCGAAGCTGGTACGTCTCTTCTCTGGTAGTCGGAAGAGGATGAATTCGAACTCTGAGAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTCGCTCAGTCGTCCTTGTGGGGAATTCCTCCACGTGGAATGCCCTGGCCTCCTTCCGTAAAATGGGCTCCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TAAAAGACTAAAATCTTCTGTCCTTCAAGGAATTCAGAACCGGGAGGGGGCAGAAGTTTCCAAGGAGGAGCCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGGAGACCCAGGAAGGGCTGCTCCCAATGGCACCGTTGCCATCCTGGGAAAGGGCCTGGGCAGGTGTACATCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTGGGCCCTGTAGGAGATGGCGCCGGGTCTGACTGCTCAGACCCCGAGGACACGGAGGACGCCTTCCAGAGGAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACACACCGTTCTCGCAGCATCCGCAGGGCCTATGGCCTGGGCCGCATCAGCCTGCTGGACCTGGGGCGGCAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGTGCCGGAGCCCGCCGTGTGTGAGATCCAAGTTCGAGACCCTGAACCCAGCAGGGCTGTGCCTCTGCCACGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGAAGCAAGAGCATCGACAGCTTGAGCGTCCTGAAGAGCTCCTTCAAGCGCAAGTCTGCATCCAACCTCACGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACTGCAGGGTGACAGGCAGGTTCCCTCCAGAACCTTGAGCAGCTTCTTCACAGACCCGGAGAAGCCGGGTGGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CAGAGAGAAGAACCAGACGCTGGAGGAGCCCCATCCGGGCCAAGGACTTCGACAGAGTCCTGAGACTGGTGAGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATGTCAAGGATGCGGCTTGGAAGAGGGAGGCCCCCAGGAGTGCAGCCCCTGGCCCTGGTCCCGGTCTCGGGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAGAACCCACTACTTGCGCCACGAAGCAAGCTACACGATGACTACTCGCGTCGTACTAGCAGCAGCGTGGAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGATGCCAGGCGTGGCGGCTCACCCTGTATCCCTGCACCATGCACCACTGCGCCCTACGCAGCTCCAGAGCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CACTTAGATGTGGATACTGCAGTATTCCCCCTGGAAACTAAAAGTGCTCAGCCACTGGGAAATGATGGACCTCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGCCAGCAGTCCCTCACCAATCCCCACGGACCCAGAAGGGTTGAGCCAAGGCTCCAGTGAGGCACATACTGGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCCAACATCCTTTTAATCCCGTGCAGCTTCCCACTCCTCTGAGACCTACCACACCCAAGCCCCAAAGCCCTCAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGCCCAGGGAGTACTAAGTGCCCCAGTAGTCTGAGTGTGCTGTCCCTCAGTTCAGCGGACAGTGAAGAGCGGAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TGAGGATGCTTCGCACAGGCAACCGGGACCCGTGTCCCTCCAGGATACTGTCCTTAACGCTGCTGGTGATGTGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGGGAGAAAGCGGTGACAGCTATTTTCCCGAGAATCTCGATGGAGCCACCCATCCAGAAGAGAAGAAGGAAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTCCTGGTGACTGAGGATGACTGGCCGCAGGGCTCAGCCCTGGAGGAGGAGCAGAATGAGGCGCCTCGAATCTC 1628
Query 1 -----------------------------------------------ATGACTTCTGCCAGC------------ 15
.|||||...||||||
Sbjct 1629 CAGGAGGAGGTGGGGCTCGGGACGCCGCACCCGGCCACGACCACTGTCTGACTATGGCCAGCTGGCCGGCAGAA 1702
Query 16 -----------CCTGAAGA-------------------CCAGA-------------------ATGCTCC----- 35
|||||||| ||||| ||||.||
Sbjct 1703 GCTTGTCCATTCCTGAAGATGCCATTGCTGCAGACCCTCCAGATGAGGACCACGTGGACAGGATGCACCCAGCA 1776
Query 36 AGTG-GGCT---------------------GCCC-------------CAAAGGAGCCCGGAGAAGGCGCCCCAT 74
|||| |.|| |||| ||..||||.||||||||||||.||.||
Sbjct 1777 AGTGTGACTACCACCAGCCAGGATCCATGCGCCCCCTCAGGCTCTTGCAGGGGAGGCCGGAGAAGGCGACCTAT 1850
Query 75 TTCCGTGATAGGTGGGGTCAGCTTGTATGGGACCAACCAGACGGAGGAACTGGACAATCTTCTGACCCAACCGG 148
.||.|||||.||.|||||||||||.|||||.|.||.||||...|||||..||||.||.||..||..||||||.|
Sbjct 1851 ATCTGTGATTGGAGGGGTCAGCTTCTATGGCAACACCCAGGTAGAGGATGTGGAGAACCTCTTGGTCCAACCAG 1924
Query 149 CTTCCAGGCCGCCCATGCCTGCTCACCAGGTGCCACCCTACAAGGCTGTGTCGGCCCGGTTCCGGCCCTTCACA 222
|..|||||||.||..|||||||.|||||.||.||||||||||||||||||||.|||||..|||||||||||||.
Sbjct 1925 CAGCCAGGCCTCCTGTGCCTGCACACCAAGTTCCACCCTACAAGGCTGTGTCTGCCCGCCTCCGGCCCTTCACC 1998
Query 223 TTCTCCCAGAGCACCCCCATTGGGTTGGACCGTGTGGGACGCCGGCGGCAGATGAGAGCATCCAACGTTTCTTC 296
|||||.||||||||.|||||.|||.|||||||.|||||.||.||.||||||||||.|.|||||||.||.|||||
Sbjct 1999 TTCTCTCAGAGCACTCCCATCGGGCTGGACCGCGTGGGGCGGCGACGGCAGATGAAAACATCCAATGTCTCTTC 2072
Query 297 AGATGGAGGTACTGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAGCTATGAAGACCTCT 370
||||||||||.|.|||.|.||.||||||||||||||.||.|||||||||||.||||||||||||||.||.||||
Sbjct 2073 AGATGGAGGTGCGGAGTCTTCGGCCTTAGTGGATGATAATGGTAGTGAGGAAGACTTCAGCTATGAGGAGCTCT 2146
Query 371 GCCAGGCCAGCCCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATCAATGAGCTGATCAGTGATGGCAAC 444
|||||||||.||||||||||||||||||.||.|||||.||||||||||||||||||||.|||||.|||||||.|
Sbjct 2147 GCCAGGCCAACCCTCGGTACCTGCAGCCAGGAGGGGAACAGCTGGCCATCAATGAGCTCATCAGCGATGGCAGC 2220
Query 445 GTGGTCTGCGCAGAAGCCCTGTGGGACCATGTGACCATGGATGACCAGGAACTGGGCTTCAAAGCCGGGGATGT 518
||||||||.||||||||.|||||||||||||||||||||||.||||||||.|||||||||||.||.||||||||
Sbjct 2221 GTGGTCTGTGCAGAAGCACTGTGGGACCATGTGACCATGGACGACCAGGAGCTGGGCTTCAAGGCTGGGGATGT 2294
Query 519 CATCCAGGTTCTGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGCAGTGAAGATAAGGAAGCCTGGTTCCCCG 592
||||||.|||||||||||.||.|||||||||||||||||||||||.|.||||||.||.||.|||||||||||.|
Sbjct 2295 CATCCAAGTTCTGGAAGCTTCTAACAAGGACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTGGTTCCCTG 2368
Query 593 CGAGCTTCGTCAGATTGCGAGTGAATCAGGAAGAGCTGTCGGAAAACTCCAGCAGCACCCCCAGTGAGGAGCAG 666
|.|||||.||.||..|.|||||.||||||||.||||||.|.||.||||.|||||||.|||...|.||.||||||
Sbjct 2369 CAAGCTTTGTTAGGCTTCGAGTCAATCAGGAGGAGCTGCCCGAGAACTGCAGCAGCTCCCATGGGGAAGAGCAG 2442
Query 667 GACGAGGAGGCCAGCCAGAG-CCGCCACAGACACTGTGAGAACAAGCAGCAGATGCGGACCAACGTCATCCGGG 739
||.|||||..|||| ||.|| ||||||||..|||...||||.|.|||||||||||||||||||||||||||.||
Sbjct 2443 GATGAGGACACCAG-CAAAGCCCGCCACAAGCACCCAGAGAGCCAGCAGCAGATGCGGACCAACGTCATCCAGG 2515
Query 740 AGATCATGGACACCGAGCGGGTGTACATCAAACACCTCAGGGACATCTGTGAGGGCTATATCCGACAGTGCCGC 813
||||.|||.||||||||||.|||||.|||||.|||||.|.|||||||||.||||||||||||||||||||.||.
Sbjct 2516 AGATAATGAACACCGAGCGAGTGTATATCAAGCACCTGAAGGACATCTGCGAGGGCTATATCCGACAGTGTCGT 2589
Query 814 AAGCACACAGGAATGTTCACCGTTGCGCAGNTAGCCACTATTTTTGGAAACATTGAAGATATTTACAAATTCCA 887
||||||||.|||||||||||||||||||||.||||||||||||||||||||||||||||.||||||||||||||
Sbjct 2590 AAGCACACGGGAATGTTCACCGTTGCGCAGCTAGCCACTATTTTTGGAAACATTGAAGACATTTACAAATTCCA 2663
Query 888 AAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACAAAGAGGAACCTCACTTAAGTGAAATAGGATCTTGCT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||
Sbjct 2664 AAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACAAAGAGGAACCTCACTTGAGTGAAATAGGATCCTGCT 2737
Query 962 TTCTTCAAAATCAAGAGGGCTTTGCCATCTATTCCGAGTACTGCAACAACCACCCGGGCGCCTGCCTGGAGCTC 1035
|||||.|..|.|||||||||||.||||||||.||.||||||||||||||||||||.||||||||..|||||||.
Sbjct 2738 TTCTTGAGCACCAAGAGGGCTTCGCCATCTACTCTGAGTACTGCAACAACCACCCAGGCGCCTGTGTGGAGCTG 2811
Query 1036 GCCAACCTCATGAAGCAGGGCAAGTACAGACATTTCTTTGAAGCCTGCCGCCTGCTGCAGCAGATGATTGACAT 1109
.|||||||||||||.||..||||||||.|.||.|||||.||.||||||||||||||.|||||||||||.|||||
Sbjct 2812 TCCAACCTCATGAAACACAGCAAGTACCGGCACTTCTTCGAGGCCTGCCGCCTGCTCCAGCAGATGATCGACAT 2885
Query 1110 CGCCATCGACGGGTTCCTGCTCACACCAGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCA 1183
||||.|.|||||.|||||.|||||.||.|||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 2886 CGCCCTGGACGGCTTCCTCCTCACGCCTGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCTGAGCTGCTCA 2959
Query 1184 AGTATACCACACAGGAACACGGTGATTACAGCAACATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGT 1257
||||.|||||||||||.|||||.|||||||.|||.|||||||||||.|||||.|||||||||||.||||||||.
Sbjct 2960 AGTACACCACACAGGAGCACGGCGATTACAACAATATAAAGGCAGCCTATGAAGCCATGAAGAACGTGGCCTGC 3033
Query 1258 CTGATCAACGAGCGCAAGCGCAAGCTGGAGAGCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCTG 1331
.|||||||.||.||||||||||||||||||||||||||||||||.||.||||||||||||||.|||||.|||||
Sbjct 3034 TTGATCAATGAACGCAAGCGCAAGCTGGAGAGCATCGACAAGATCGCCCGCTGGCAGGTGTCCATCGTAGGCTG 3107
Query 1332 GGAGGGACTGGATATCTTAGACCGAAGCTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAAG 1405
||||||.|||||.||..|||||||||||||.||.|||||||||||.||.|||||||||||||||||.|.|||.|
Sbjct 3108 GGAGGGCCTGGACATTCTAGACCGAAGCTCTGAGTTGATTCATTCCGGAGAGCTGACCAAAATCACCAGGCAGG 3181
Query 1406 GCAAAAGCCAGCAGCGGACGTTCTTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGG 1479
||||.||||||||.||.|..||||||||.||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 3182 GCAAGAGCCAGCAACGCATCTTCTTCCTTTTCGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGG 3255
Query 1480 GACATGCTGTACTACAAGGGCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGGATGGGCGCGACAA 1553
||||||||.||||||||||||||..||||||||||.|||.|.||||||||||||.|||.|||||||||.|||||
Sbjct 3256 GACATGCTATACTACAAGGGCCGCATGGACATGGACGAGGTAGAGCTTGTGGACGTGGAGGATGGGCGGGACAA 3329
Query 1554 GGACTGCAACCTCAGCGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGAGGTTTATTTGTTTTGTG 1627
.|||||.|.|||||||.||...||||||||||||||.|||||.|...||||.||||||||..||.||||.||.|
Sbjct 3330 AGACTGGAGCCTCAGCCTGCGGAATGCCTTCAAGCTGGTCAGCAAAGCCACGGACGAGGTCCATCTGTTCTGCG 3403
Query 1628 CCAAAAAACAAGAAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGGAGGCGGGTGCAAGAGGACAAG 1701
|||.|||.||||||||||||||.||||||||||||||||.|||.||.||.|||.||||||||||.||||||.||
Sbjct 3404 CCAGAAAGCAAGAAGACAAGGCCAGGTGGCTGCAGGCCTATGCGGACGAGAGGCGGCGGGTGCAGGAGGACCAG 3477
Query 1702 GAGATGGGAATGGAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAAATGCTCAAAAGGCAGGACATGGAAA 1775
.|||||||.||||||||..|||||||.|||||||||||.||||||||.||.|||||.||||||||||||||.||
Sbjct 3478 CAGATGGGTATGGAAATCCCAGAAAATCAGAAGAAACTCGCCATGTTGAACGCTCAGAAGGCAGGACATGGGAA 3551
Query 1776 GTCAAAAGGCTACAACAGGTGCCCTGTGGCCCCACCGCACCAGGGCCTGCACCCCATCCACCAGCGCCACATCA 1849
.||.||||||||||||||.||.||.|||||||||||.||||||.||||||..|||.|.||||||||||||||||
Sbjct 3552 ATCTAAAGGCTACAACAGCTGTCCCGTGGCCCCACCCCACCAGAGCCTGCCGCCCCTTCACCAGCGCCACATCA 3625
Query 1850 CTATGCCCACAAGCGTCCCCCAGCAGCAGGTCTTTGGCCTGGCGGAACCCAAGAGGAAGTCCTCGCTCTTCTGG 1923
||.|||||||.|||.||||.||||||||||||||||.|.||||.||.||||||||||||.|.|||.|.||||||
Sbjct 3626 CTGTGCCCACCAGCATCCCGCAGCAGCAGGTCTTTGCCTTGGCTGAGCCCAAGAGGAAGCCATCGATATTCTGG 3699
Query 1924 CACACCTTCAACAGGCTCACCCCCTTCCGGAAA 1956
|||||.|||.|||..||||||||||||||||||
Sbjct 3700 CACACTTTCCACAAACTCACCCCCTTCCGGAAA 3732
