Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10145
- Subject:
- NM_001304284.2
- Aligned Length:
- 4235
- Identities:
- 1437
- Gaps:
- 2605
Alignment
Query 1 ATGGACGTGGTAGAGGTCGCGGGCAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACGAAAAGGG 74
||||||.||||||||...||.|..||||.|..||||||.|||||..|||||||..|||||||.||.||.|||||
Sbjct 1 ATGGACATGGTAGAGAATGCAGATAGTTTGCAGGCACAGGAGCGGAAGGACATACTTATGAAGTATGACAAGGG 74
Query 75 ACACCGAGCTGGGCTGCCAGAGGACAAGGGGCCTAAGCCTTTTCGAAGCTACAACAACAACGTCGATCATTTGG 148
||||||||||||||||||||||||||||||||||.||||..||.||| .|||||.||.|.|.||||.|||.|
Sbjct 75 ACACCGAGCTGGGCTGCCAGAGGACAAGGGGCCTGAGCCCGTTGGAA---TCAACAGCAGCATTGATCGTTTTG 145
Query 149 GGATTGTACATGAGACGGAGCTGCCTCCTCTGACTGCGCGGGAGGCGAAGCAAATTCGGCGGGAGATCAGCCGA 222
|.|||.|.|||||||||||||||||||||.|||||||.||||||||||||.||||||||||||||||.|..|||
Sbjct 146 GCATTTTGCATGAGACGGAGCTGCCTCCTGTGACTGCACGGGAGGCGAAGAAAATTCGGCGGGAGATGACACGA 219
Query 223 AAGAGCAAGTGGGTGGATATGCTGGGAGACTGGGAGAAATACAAAAGCAGCAGAAAGCTCATAGATCGAGCGTA 296
|.||||||||||.||||.|||||||||||.|||||||.|||.||...|||.||.||.|||||||||||||.|||
Sbjct 220 ACGAGCAAGTGGATGGAAATGCTGGGAGAATGGGAGACATATAAGCACAGTAGCAAACTCATAGATCGAGTGTA 293
Query 297 CAAGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGTCCTCCTGAACATTGAGGAAATGAAGTTGAAAA 370
|||||||||.|||||||||||||||||||||.|||||||||||||||||||||||.|||||||.||||||||||
Sbjct 294 CAAGGGAATTCCCATGAACATCCGGGGCCCGGTGTGGTCAGTCCTCCTGAACATTCAGGAAATCAAGTTGAAAA 367
Query 371 ACCCCGGAAGATACCAGATCATGAAGGAGAAGGGCAAGAGGTCATCTGAGCACATCCAGCGCATCGACCGGGAC 444
||||||||||||||||||||||||||||||.||||||||||||||||||.||||||||.|.||||||||.||||
Sbjct 368 ACCCCGGAAGATACCAGATCATGAAGGAGAGGGGCAAGAGGTCATCTGAACACATCCACCACATCGACCTGGAC 441
Query 445 ATAAGCGGGACATTAAGGAAGCATATGTTCTTCAGGGATCGATACGGAACCAAGCAGCGGGAACTACTCCACAT 518
.|.||...|||..|..||||.|||.|.|||||.|||||||||||.|||.||||||||.||||||||.||.||||
Sbjct 442 GTGAGGACGACTCTCCGGAACCATGTCTTCTTTAGGGATCGATATGGAGCCAAGCAGAGGGAACTATTCTACAT 515
Query 519 CCTCCTGGCATATGAGGAGTATAACCCGGAGGTGGGCTACTGCAGGGACCTGAGCCACATCGCCGCCTTGTTCC 592
|||||||||.|||..||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 516 CCTCCTGGCCTATTCGGAGTATAACCCGGAGGTGGGCTACTGCAGGGACCTGAGCCACATCACCGCCTTGTTCC 589
Query 593 TCCTCTATCTTCCTGAGGAGGATGCATTCTGGGCACTGGTGCAGCTGCTGGCCAGTGAGAGGCACTCCCTGCAG 666
||||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||..
Sbjct 590 TCCTTTATCTGCCTGAGGAGGACGCATTCTGGGCACTGGTGCAGCTGCTGGCCAGTGAGAGGCACTCCCTGCCA 663
Query 667 GGATTTCACAGCCCAAATGGCGGGACCGTCCAGGGGCTCCAAGACCAACAGGAGCATGTGGTAGCCACGTCACA 740
|||||.||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||.|||.||||||
Sbjct 664 GGATTCCACAGCCCAAATGGTGGGACAGTCCAGGGGCTCCAAGACCAACAGGAGCATGTGGTACCCAAGTCACA 737
Query 741 ACCCAAGACCATGGGGCATCAGGACAAGAAAGATCTATGTGGGCAGTGTTCCCCGTTAGGCTGCCTCATCCGGA 814
|||||||||||||.||||||||||||||.|||.||||||.|||||||||.||.|||||||||||||..||||||
Sbjct 738 ACCCAAGACCATGTGGCATCAGGACAAGGAAGGTCTATGCGGGCAGTGTGCCTCGTTAGGCTGCCTTCTCCGGA 811
Query 815 TATTGATTGACGGGATCTCTCTCGGGCTCACCCTGCGCCTGTGGGACGTGTATCTGGTAGAAGGCGAACAGGCG 888
...||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||||.|||||||.|
Sbjct 812 ACCTGATTGACGGGATCTCTCTCGGGCTCACCCTGCGCCTGTGGGACGTGTATTTGGTGGAAGGAGAACAGGTG 885
Query 889 TTGATGCCGATAACAAGAATCGCCTTTAAGGTTCAGCAGAAGCGCCTCACGAAGACGTCCAGGTGTGGCCCGTG 962
||||||||.|||||.||.||.||..||||||||||||||||||||||||.||||||.|||||||||||||.|||
Sbjct 886 TTGATGCCAATAACCAGCATTGCTCTTAAGGTTCAGCAGAAGCGCCTCATGAAGACATCCAGGTGTGGCCTGTG 959
Query 963 GGCACGTTTTTGCAACCGGTTCGTTGATACCTGGGCCAGGGATGAGGACACTGTGCTCAAGCATCTTAGGGCCT 1036
|||||||.|..|.||||..|||.|.|||||||||||||.|.|.||.|||||.||||||||||||||||||||||
Sbjct 960 GGCACGTCTGCGGAACCAATTCTTCGATACCTGGGCCATGAACGATGACACCGTGCTCAAGCATCTTAGGGCCT 1033
Query 1037 CTATGAAGAAACTAACAAGAAAGCAGGGGGACCTGCCACCCCCAGCCAAACCCGAGCAAGGGTCGTCGGCATCC 1110
|||.|||||||||||||||.|||||.|||||||||||||||||||||||||.||||||||||||.|.||||.||
Sbjct 1034 CTACGAAGAAACTAACAAGGAAGCAAGGGGACCTGCCACCCCCAGCCAAACGCGAGCAAGGGTCCTTGGCACCC 1107
Query 1111 AGGCCTGTGCCGGCTTCACGTGGCGGGAAGACCCTCTGCAAGGGGGACAGGCAGGCCCCTCCAGGCCCACCAGC 1184
|||||||||||||||||||||||.|||||||||||||||||||||.|.||||||||||||||||||||||||||
Sbjct 1108 AGGCCTGTGCCGGCTTCACGTGGTGGGAAGACCCTCTGCAAGGGGTATAGGCAGGCCCCTCCAGGCCCACCAGC 1181
Query 1185 CCGGTTCCCGCGGCCCATTTGGTCAGCTTCCCCGCCACGGGCACCTCGTTCTTCCACACCCTGTCCTGGTGGGG 1258
||.|||||.||||||||||||.|||||||||||||||.|||||.||||||.||||||.||||||||||||||||
Sbjct 1182 CCAGTTCCAGCGGCCCATTTGCTCAGCTTCCCCGCCATGGGCATCTCGTTTTTCCACGCCCTGTCCTGGTGGGG 1255
Query 1259 CTGTCCGGGAAGACACCTACCCTGTGGGCACTCAGGGTGTGCCCAGCCCGGCCCTGGCTCAGGGAGGACCTCAG 1332
||||||||||||||||.|||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1256 CTGTCCGGGAAGACACGTACCCTGTGGGCACTCAGGGTGTGCCCAGCCTGGCCCTGGCTCAGGGAGGACCTCAG 1329
Query 1333 GGTTCCTGGAGATTCCTGCAGTGGAACTCCATGCCCCGCCTCCCAACGGACCTGGACGTAGAGGGCCCTTGGTT 1406
||||||||||||||||||.|||||||.||.||||||||.|||||||||||||||||..|||.||||||||||||
Sbjct 1330 GGTTCCTGGAGATTCCTGGAGTGGAAGTCAATGCCCCGGCTCCCAACGGACCTGGATATAGGGGGCCCTTGGTT 1403
Query 1407 CCGCCATTATGATTTCAGACAGAGCTGCTGGGTCCGTGCCATATCCCAGGAGGACCAGCTGGCCCCCTGCTGGC 1480
||.||||||||||||...|..|||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 1404 CCCCCATTATGATTTTGAATGGAGCTGCTGGGTCCGTGCCATATCCCAGGAGGACCAGCTGGCCACCTGCTGGC 1477
Query 1481 AGGCTGAACACCCTGCGGAGCGGGT---------------------------GAGATCGGCTTTCGCTGCACCC 1527
|||||||||| ||||||||.||.| ||||| |.||||..|.|||...
Sbjct 1478 AGGCTGAACA--CTGCGGAGAGGTTCACAACAAAGATATGAGTTGGCCTGAGGAGAT-GTCTTTTACAGCAAAT 1548
Query 1528 AGCACT-----------------GATTCCGAC--------------CAGG-----GCACCC------------C 1553
||.|.| |.||||.|| |||| |||.|| .
Sbjct 1549 AGTAGTAAAATAGATAGACAAAAGGTTCCCACAGAAAAGGGAGCCACAGGTCTAAGCAACCTGGGAAACACATG 1622
Query 1554 CTTCA------------------GAGCTAGGGACGAACAG---------CAGTGTGCTCCCACCTCAGGG---- 1596
||||| |.|.|||..||..|||| ||||.|..| |.|||||||
Sbjct 1623 CTTCATGAACTCAAGCATCCAGTGCGTTAGTAACACACAGCCACTGACACAGTATTTT---ATCTCAGGGAGAC 1693
Query 1597 -CCTTGCCTCTG--------CGGCC---TCC------------------------------------------- 1615
.||| |.|| .||.| |||
Sbjct 1694 ATCTT---TATGAACTCAACAGGACAAATCCCATTGGTATGAAGGGGCATATGGCTAAATGCTATGGTGATTTA 1764
Query 1616 --------ACT------TGGAAAGTTCTCA-------GTTCCCTCC----AGGCTTC----------------- 1647
||| ||||| |||| |||.|| || |.|||||
Sbjct 1765 GTGCAGGAACTCTGGAGTGGAA----CTCAGAAGAGTGTTGCC-CCATTAAAGCTTCGGCGGACCATAGCAAAA 1833
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 1834 TATGCTCCCAAGTTTGATGGGTTTCAGCAACAAGACTCCCAAGAACTTCTGGCTTTTCTCTTGGATGGTCTTCA 1907
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 1908 TGAAGATCTCAACCGAGTCCATGAAAAGCCATATGTGGAACTGAAGGACAGTGATGGCCGACCAGACTGGGAAG 1981
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 1982 TAGCTGCAGAGGCCTGGGACAACCATCTAAGAAGAAATAGATCAATTATTGTGGATTTGTTCCATGGGCAGCTA 2055
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2056 AGATCTCAAGTCAAATGCAAGACATGTGGGCATATAAGTGTCCGATTTGACCCTTTCAATTTTTTGTCTTTGCC 2129
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2130 ACTACCAATGGACAGTTACATGGACTTAGAAATAACAGTGATTAAGTTAGATGGTACTACCCCTGTACGGTATG 2203
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2204 GACTAAGACTGAATATGGATGAAAAGTACACAGGTTTAAAAAAACAGCTGAGGGATCTCTGTGGACTTAATTCA 2277
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2278 GAACAAATCCTACTAGCAGAAGTACATGATTCCAACATAAAGAACTTTCCTCAGGATAACCAAAAAGTACAACT 2351
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2352 CTCAGTGAGCGGATTTTTGTGTGCATTTGAAATTCCTGTCCCTTCATCTCCAATTTCAGCTTCTAGTCCAACAC 2425
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2426 AAATAGATTTCTCCTCTTCACCATCTACAAATGGAATGTTCACCCTAACTACCAATGGGGACCTACCCAAACCA 2499
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2500 ATATTCATCCCCAATGGAATGCCAAACACTGTTGTGCCATGTGGAACTGAGAAGAACTTCACAAATGGAATGGT 2573
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2574 TAATGGTCACATGCCATCTCTTCCTGACAGCCCCTTTACAGGTTACATCATTGCAGTCCACCGAAAAATGATGA 2647
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2648 GGACAGAACTGTATTTCCTGTCACCTCAGGAGAATCGCCCCAGCCTCTTTGGAATGCCATTGATTGTTCCATGC 2721
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2722 ACTGTGCATACCCGGAAGAAAGACCTATATGATGCGGTTTGGATTCAAGTATCCTGGTTAGCAAGACCACTCCC 2795
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2796 ACCTCAGGAAGCTAGTATTCATGCCCAGGATCGTGATAACTGTATGGGCTATCAATATCCATTCACTCTACGAG 2869
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2870 TTGTGCAGAAAGATGGGAACTCCTGTGCTTGGTGCCCACAGTATAGATTTTGCAGAGGCTGTAAAATTGATTGT 2943
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 2944 GGGGAAGACAGAGCTTTCATTGGAAATGCCTATATTGCTGTGGATTGGCACCCCACAGCCCTTCACCTTCGCTA 3017
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3018 TCAAACATCCCAGGAAAGGGTTGTAGATAAGCATGAGAGTGTGGAGCAGAGTCGGCGAGCGCAAGCCGAGCCCA 3091
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3092 TCAACCTGGACAGCTGTCTCCGTGCTTTCACCAGTGAGGAAGAGCTAGGGGAAAGTGAGATGTACTACTGTTCC 3165
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3166 AAGTGTAAGACCCACTGCTTAGCAACAAAGAAGCTGGATCTCTGGAGGCTTCCACCCTTCCTGATTATTCACCT 3239
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3240 TAAGCGATTTCAATTTGTAAATGATCAGTGGATAAAATCACAGAAAATTGTCAGATTTCTTCGGGAAAGTTTTG 3313
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3314 ATCCGAGTGCTTTTTTGGTACCACGAGACCCGGCCCTCTGCCAGCATAAACCACTCACACCCCAGGGGGATGAG 3387
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3388 CTCTCCAAGCCCAGGATTCTGGCAAGAGAGGTGAAGAAAGTGGATGCGCAGAGTTCGGCTGGAAAAGAGGACAT 3461
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3462 GCTCCTAAGCAAAAGCCCATCCTCACTCAGCGCTAACATCAGCAGCAGCCCAAAAGGTTCTCCTTCTTCATCAA 3535
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3536 GAAAAAGTGGAACCAGCTGTCCCTCCAGCAAAAACAGCAGCCCTAATAGCAGCCCACGGACTTTGGGGAGGAGC 3609
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3610 AAAGGGAGGCTCCGGCTGCCCCAGATTGGCAGCAAAAATAAGCCGTCAAGTAGTAAGAAGAACTTGGATGCCAG 3683
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3684 CAAAGAGAATGGGGCTGGGCAGATCTGTGAGCTGGCTGACGCCTTGAGCCGAGGGCATATGCGGGGGGGCAGCC 3757
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3758 AACCAGAGCTGGTCACTCCTCAGGACCATGAGGTAGCTTTGGCCAATGGATTCCTTTATGAGCATGAAGCATGT 3831
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3832 GGCAATGGCTGTGGCGATGGCTACAGCAATGGTCAGCTTGGAAACCACAGTGAAGAAGACAGCACTGATGACCA 3905
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3906 AAGAGAAGACACTCATATTAAGCCTATTTATAATCTATATGCAATTTCATGCCATTCAGGAATTCTGAGTGGGG 3979
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 3980 GCCATTACATCACTTATGCCAAAAACCCAAACTGCAAGTGGTACTGTTATAATGACAGCAGCTGTGAGGAACTT 4053
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 4054 CACCCTGATGAAATTGACACCGACTCTGCCTACATTCTTTTCTATGAGCAGCAGGGGATAGACTACGCACAATT 4127
Query 1648 -------------------------------------------------------------------------- 1647
Sbjct 4128 TCTGCCAAAGATTGATGGCAAAAAGATGGCAGACACAAGCAGTACGGATGAAGACTCTGAGTCTGATTACGAAA 4201
Query 1648 ----------------- 1647
Sbjct 4202 AGTACTCTATGTTACAG 4218
