Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10171
Subject:
XR_001744736.1
Aligned Length:
2389
Identities:
261
Gaps:
2116

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGCCGATGTACCAGGTAAAGCCCTATCACCGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTCTGCGCCCCTCTCCGTGTGGAGCCCACCTGCATGTACTGGCTCCCCAACATGCACGGCAGGAGCGGCGGCCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCACTTGGCACTGGCCACTTGCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTAC  444

Query    1  ------------------------------------ATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGAC  38
                                                ||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGAC  518

Query   39  ATGCAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCA  112
            ||||                                                                      
Sbjct  519  ATGC----------------------------------------------------------------------  522

Query  113  CGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCGTG  186
                                                                  ||||||||||||||||||||
Sbjct  523  ------------------------------------------------------AGCACCGAGAAGTCCGCGTG  542

Query  187  AAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCG  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  543  AAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCG  616

Query  261  CTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGA  334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  617  CTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGA  690

Query  335  TACTTATCCT--------------------------TAAGAAC-----ATGGAAG------------------G  359
            ||||||||||                          |||||||     .||||||                  .
Sbjct  691  TACTTATCCTTAAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCA  764

Query  360  GGTGCTGATGGACGTGGAC--TGTGAGAGCGTCTAC---CC--CATTGTG------------------------  402
            |||||..|     |.||||  |.|...|||.|||.|   ||  |.|||||                        
Sbjct  765  GGTGCCCA-----GAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGCTCCACGACCACGCT  833

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  834  GCTTACTTAGTAGACAACCTGTGGGACTGTGCAGGGACTCAGCTGAAGGACTGGGAGGGTCTGACAAGCCTGCT  907

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  908  GCTGGAGAAGGACCAGAGCACGTGCCACATGGAGCCAGGGCCAGGGACCTTCCACCTCCTAGGGTGAAACCAGG  981

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct  982  AGAGATTGCTTGCTTCACTTGTACAAGGCAGGAACGGTGGCATGGGGTGGGGGAAACTTGGAGTTGGAAGGTGG  1055

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1056  CTAATCTTTGATTCTATGTTTTTGATCCTCCTGGCACTCCAGACCTGGGTGATGTGCAGGAGAGCACACTGATA  1129

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1130  GAAATCCTTGTGTCCAGTGCCCAGCAACTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGCGCCCGCCAC  1203

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1204  CACGCCTGGCTAACTTTTTTGTATTTTTAGTAGAGACGGGTTTTCACCGTGTTAGCCAGGATGGTCTTGATCTC  1277

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1278  TTGACCTTGTGATCCACCTGCCTCATCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCATG  1351

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1352  TTAGACAATTTTTAATTCATCCTCTCTGTGCTGTTGTTTTCTCAGCTGTGAAAGGAATATTCTGGTGGGGACAA  1425

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1426  GGTTACAGAGTTGCTGAGAGGGTCTCATGACATGAAGGTACTGGCCTTGGCACAGTGCCTGGGGGGGCGGGGAC  1499

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1500  TCCGCACATGCCTGTGATGTCACAGTTACTGTCAGTTCACAGCGAACCTTCCCTCCTTTTCCTGTTGACTTTCC  1573

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1574  CACACTCCTGTAACCCTCCCTCCCTCCCTTCTTCCTCTCTCTCTCTCTCACTCACGCACACGCACACACACACA  1647

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1648  CACACACACACACACACACACTCCATTCTCTGTCTCCATGACTCTGGAGTAAACTAACGTCTCGAGTTGCCATT  1721

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1722  GGAAGCCCCATTGTCCTCATTTTGTTTTGTTTTGTTTGTTTGAGACGGGGTCTCGCTCTGTCCCCCAGGCTGGA  1795

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1796  GTGCAGTGGTGCGATCTCAGCCCACTGCAGCCTCCGCCTCCTAGGTTCAAGCGATTCTCCTGCCTCACCCTCCT  1869

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1870  GAGTAGCTGTGATCATAGGTGCCCGCCACCACACCCGACTAATTTTTGTGTTTTTTAGTAGAGACAGGGTTTCA  1943

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 1944  CTATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGA  2017

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2018  TTACAGGAGTGAGCCACCATGCCCAGCCTCCGTTGTCCTCATTTAGACTTTCATGGGTTATAGGCACTTTTGAC  2091

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2092  TTCCTGGGGTCCTTCTTCAGTTAAAAAAAAAAATTAGAAAATTAGGCCGGGCGTGGTGGCACATGCCTGTAATC  2165

Query  403  --------------------------------------------------------------------------  402
                                                                                      
Sbjct 2166  CCAGCACTTTATGAGGCCGAGGTGGGAGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAATGTGGAG  2239

Query  403  ---------------------  402
                                 
Sbjct 2240  AAACCCCGTCCCTACTAAAAA  2260

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