Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10208
Subject:
NR_138486.2
Aligned Length:
3529
Identities:
1665
Gaps:
1864

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGGAGAGACGAGGGCAGCGGAGGAGGCGAGGAGCGCCGGGTACCGGGCCGGGGGAGCCGCGGGCTCTCGGGGA  74

Query    1  -----------ATGAACAAGCTTTACATCGGGAACCTGAGCCCCGCCGTCACCGCCGACGACCTCCGGCAGCTC  63
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGAGACGGATGATGAACAAGCTTTACATCGGGAACCTGAGCCCCGCCGTCACCGCCGACGACCTCCGGCAGCTC  148

Query   64  TTTGGGGACAGGAAGCTGCCCCTGGCGGGACAGGTCCTGCTGAAGTCCGGCTACGCCTTCGTGGACTACCCCGA  137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TTTGGGGACAGGAAGCTGCCCCTGGCGGGACAGGTCCTGCTGAAGTCCGGCTACGCCTTCGTGGACTACCCCGA  222

Query  138  CCAGAACTGGGCCATCCGCGCCATCGAGACCCTCTCGGGTAAAGTGGAATTGCATGGGAAAATCATGGAAGTTG  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCAGAACTGGGCCATCCGCGCCATCGAGACCCTCTCGGGTAAAGTGGAATTGCATGGGAAAATCATGGAAGTTG  296

Query  212  ATTACTCAGTCTCTAAAAAGCTAAGGAGCAGGAAAATTCAGATTCGAAACATCCCTCCTCACCTGCAGTGGGAG  285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATTACTCAGTCTCTAAAAAGCTAAGGAGCAGGAAAATTCAGATTCGAAACATCCCTCCTCACCTGCAGTGGGAG  370

Query  286  GTGTTGGATGGACTTTTGGCTCAATATGGGACAGTGGAGAATGTGGAACAAGTCAACACAGACACAGAAACCGC  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTGTTGGATGGACTTTTGGCTCAATATGGGACAGTGGAGAATGTGGAACAAGTCAACACAGACACAGAAACCGC  444

Query  360  CGTTGTCAACGTCACATATGCAACAAGAGAAGAAGCAAAAATAGCCATGGAGAAGCTAAGCGGGCATCAGTTTG  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGTTGTCAACGTCACATATGCAACAAGAGAAGAAGCAAAAATAGCCATGGAGAAGCTAAGCGGGCATCAGTTTG  518

Query  434  AGAACTACTCCTTCAAGATTTCCTACATCCCGGATGAAGAGGTGAGCTCCCCTTCGCCCCCTCAGCGAGCCCAG  507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGAACTACTCCTTCAAGATTTCCTACATCCCGGATGAAGAGGTGAGCTCCCCTTCGCCCCCTCAGCGAGCCCAG  592

Query  508  CGTGGGGACCACTCTTCCCGGGAGCAAGGCCACGCCCCTGGGGGCACTTCTCAGGCCAGACAGATTGATTTCCC  581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGTGGGGACCACTCTTCCCGGGAGCAAGGCCACGCCCCTGGGGGCACTTCTCAGGCCAGACAGATTGATTTCCC  666

Query  582  GCTGCGGATCCTGGTCCCCACCCAGTTTGTTGGTGCCATCATCGGAAAGGAGGGCTTGACCATAAAGAACATCA  655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTGCGGATCCTGGTCCCCACCCAGTTTGTTGGTGCCATCATCGGAAAGGAGGGCTTGACCATAAAGAACATCA  740

Query  656  CTAAGCAGACCCAGTCCCGGGTAGATATCCATAGAAAAGAGAACTCTGGAGCTGCAGAGAAGCCTGTCACCATC  729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTAAGCAGACCCAGTCCCGGGTAGATATCCATAGAAAAGAGAACTCTGGAGCTGCAGAGAAGCCTGTCACCATC  814

Query  730  CATGCCACCCCAGAGGGGACTTCTGAAGCATGCCGCATGATTCTTGAAATCATGCAGAAAGAGGCAGATGAGAC  803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CATGCCACCCCAGAGGGGACTTCTGAAGCATGCCGCATGATTCTTGAAATCATGCAGAAAGAGGCAGATGAGAC  888

Query  804  CAAACTAGCCGAAGAGATTCCTCTGAAAATCTTGGCACACAATGGCTTGGTTGGAAGACTGATTGGAAAAGAAG  877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAAACTAGCCGAAGAGATTCCTCTGAAAATCTTGGCACACAATGGCTTGGTTGGAAGACTGATTGGAAAAGAAG  962

Query  878  GCAGAAATTTGAAGAAAATTGAACATGAAACAGGGACCAAGATAACAATCTCATCTTTGCAGGATTTGAGCATA  951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCAGAAATTTGAAGAAAATTGAACATGAAACAGGGACCAAGATAACAATCTCATCTTTGCAGGATTTGAGCATA  1036

Query  952  TACAACCCGGAAAGAACCATCACTGTGAAGGGCACAGTTGAGGCCTGTGCCAGTGCTGAGATAGAGATTATGAA  1025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TACAACCCGGAAAGAACCATCACTGTGAAGGGCACAGTTGAGGCCTGTGCCAGTGCTGAGATAGAGATTATGAA  1110

Query 1026  GAAGCTGCGTGAGGCCTTTGAAAATGATATGCTGGCTGTTAACCAACAAGCCAATCTGATCCCAGGGTTGAACC  1099
            |||||||||||||||||||||||||||||||||||||||||||                               
Sbjct 1111  GAAGCTGCGTGAGGCCTTTGAAAATGATATGCTGGCTGTTAAC-------------------------------  1153

Query 1100  TCAGCGCACTTGGCATCTTTTCAACAGGACTGTCCGTGCTATCTCCACCAGCAGGGCCCCGCGGAGCTCCCCCC  1173
                                                                                      
Sbjct 1154  --------------------------------------------------------------------------  1153

Query 1174  GCTGCCCCCTACCACCCCTTCACTACCCACTCCGGATACTTCTCCAGCCTGTACCCCCATCACCAGTTTGGCCC  1247
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154  ------------------------ACCCACTCCGGATACTTCTCCAGCCTGTACCCCCATCACCAGTTTGGCCC  1203

Query 1248  GTTCCCGCATCATCACTCTTATCCAGAGCAGGAGATTGTGAATCTCTTCATCCCAACCCAGGCTGTGGGCGCCA  1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204  GTTCCCGCATCATCACTCTTATCCAGAGCAGGAGATTGTGAATCTCTTCATCCCAACCCAGGCTGTGGGCGCCA  1277

Query 1322  TCATCGGGAAGAAGGGGGCACACATCAAACAGCTGGCGAGATTCGCCGGAGCCTCTATCAAGATTGCCCCTGCG  1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278  TCATCGGGAAGAAGGGGGCACACATCAAACAGCTGGCGAGATTCGCCGGAGCCTCTATCAAGATTGCCCCTGCG  1351

Query 1396  GAAGGCCCAGACGTCAGCGAAAGGATGGTCATCATCACCGGGCCACCGGAAGCCCAGTTCAAGGCCCAGGGACG  1469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352  GAAGGCCCAGACGTCAGCGAAAGGATGGTCATCATCACCGGGCCACCGGAAGCCCAGTTCAAGGCCCAGGGACG  1425

Query 1470  GATCTTTGGGAAACTGAAAGAGGAAAACTTCTTTAACCCCAAAGAAGAAGTGAAGCTGGAAGCGCATATCAGAG  1543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426  GATCTTTGGGAAACTGAAAGAGGAAAACTTCTTTAACCCCAAAGAAGAAGTGAAGCTGGAAGCGCATATCAGAG  1499

Query 1544  TGCCCTCTTCCACAGCTGGCCGGGTGATTGGCAAAGGTGGCAAGACCGTGAACGAACTGCAGAACTTAACCAGT  1617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500  TGCCCTCTTCCACAGCTGGCCGGGTGATTGGCAAAGGTGGCAAGACCGTGAACGAACTGCAGAACTTAACCAGT  1573

Query 1618  GCAGAAGTCATCGTGCCTCGTGACCAAACGCCAGATGAAAATGAGGAAGTGATCGTCAGAATTATCGGGCACTT  1691
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574  GCAGAAGTCATCGTGCCTCGTGACCAAACGCCAGATGAAAATGAGGAAGTGATCGTCAGAATTATCGGGCACTT  1647

Query 1692  CTTTGCTAGCCAGACTGCACAGCGCAAGATCAGGGAAATTGTACAACAGGTGAAGCAGCAGGAGCAGAAATACC  1765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648  CTTTGCTAGCCAGACTGCACAGCGCAAGATCAGGGAAATTGTACAACAGGTGAAGCAGCAGGAGCAGAAATACC  1721

Query 1766  CTCAGGGAGTCGCCTCACAGCGCAGCAAG---------------------------------------------  1794
            |||||||||||||||||||||||||||||                                             
Sbjct 1722  CTCAGGGAGTCGCCTCACAGCGCAGCAAGTGAGGCTCCCACAGGCACCAGCAAAACAACGGATGAATGTAGCCC  1795

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 1796  TTCCAACACCTGACAGAATGAGACCAAACGCAGCCAGCCAGATCGGGAGCAAACCAAAGACCATCTGAGGAATG  1869

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 1870  AGAAGTCTGCGGAGGCGGCCAGGGACTCTGCCGAGGCCCTGAGAACCCCAGGGGCCGAGGAGGGGCGGGGAAGG  1943

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 1944  CAAAGCAGTGCTCTGAGTATCACATCACACAAAAGGAACAAAAGCGAAACACACAAACCAGCCTCAACTTACAC  2017

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2018  TTGGTTACTCAAAAGAACAAGAGTCAATGGTACTTGTCCTAGCGTTTTGGAAGAGGAAAACAGGAACCCACCAA  2091

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2092  ACCAACCAATCAACCAAACAAAGAAAAAATTCCACAATGAAAGAATGTATTTTGTCTTTTTGCATTTTGGTGTA  2165

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2166  TAAGCCATCAATATTCAGCAAAATGATTCCTTTCTTTAAAAAAAAAAAATGTGGAGGAAAGTAGAAATTTACCA  2239

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2240  AGGTTGTTGGCCCAGGGCGTTAAATTCACAGATTTTTTTAACGAGAAAAACACACAGAAGAAGCTACCTCAGGT  2313

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2314  GTTTTTACCTCAGCACCTTGCTCTTGTGTTTCCCTTAGAGATTTTGTAAAGCTGATAGTTGGAGCATTTTTTTA  2387

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2388  TTTTTTTAATAAAAATGAGTTGGAAAAAAAATAAGATATCAACTGCCAGCCTGGAGAAGGTGACAGTCCAAGTG  2461

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2462  TGCAACAGCTGTTCTGAATTGTCTTCCGCTAGCCAAGAACCTATATGGCCTTCTTTTGGACAAACCTTGAAAAT  2535

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2536  GTTTATTTAAAAAAAAAAAAGATGACAAAGAAAAACAGAGAGAGAGAATATTGGAGATGTCCTGAATTTTAATA  2609

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2610  GGGTACGCGCCATTAGGGCTTTTTGCGCTAAAGGATGAACATGTACTGGTTTATGTGGACAAGCCATTATACCA  2683

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2684  CCAGACTGCAATGCCAGTTTCCTCTACTGCAAACAGTGTTCTGTGACAAAAAAAAAAAAAAAAAAAAGAAAAAA  2757

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2758  AAAGAAAAAACAGAAATATATCCAGCTAACAAGATCCTGGTGTCTTGGTGTTTTATTTTACTAGGCATTGCCTC  2831

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2832  ATCCCAGGTGTCAGCTGAGTCCTAGCTCTGAGGGACCTGGGCAGACAGGCGGTAGGTGTGACCTGGATCCACAC  2905

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2906  AGCTACTCTGAGAAAGCTGGTTTTGCCCAGGAAAGTCTTTGGGAGAAGCTAAACTAGATCGGTGGTCAAAGTGT  2979

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2980  AGTCCCCAGACCAGCAGCATCAGCTATCATCTGGGAACTTGTTAGAAATGTAGATTCTTGGGGTCCACCTTGAA  3053

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 3054  TCAGAAATCCTGGGGGTGAGGCCCAGCAACCTTTTCAGCAAGGCCTCTGGGTGATTGCTGTGCGCACTGAAGTT  3127

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 3128  TCCGAACCTCGGAGCTAGAGGGATGGATCGACTGCATGTCAAGCTAGAGAAGACCAGTCTATCCTTAAGGAACT  3201

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 3202  GCAAGCCTGGCCAGGCAAAGCTGCTTTTTAAGTGGAGGAAAGGGGGAGGATAATATGCCCGGCAGTTCCGGGAA  3275

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 3276  GAGGCACTTCACGCCTCCACGGGAAGCTCACTAGTAAGTGCAGGCATACCTCAGGAACGTCGCAGGTTCAGTTC  3349

Query 1795  ---------------------------------------------------  1794
                                                               
Sbjct 3350  CAGACCACCACAGTAAAGCGAACTTTGCAATAAAATGAGTCATACACGTTT  3400

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