Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- NR_001575.1
- Aligned Length:
- 5701
- Identities:
- 64
- Gaps:
- 5629
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTGCGGCTGTCCCGGGAGGGCTTTAGCGCAGAGCCGCGACGGGCAGCGGGGGTGTGTTGCCTGACGCGTGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGCTGTGGGGCGACACACGGGGGCGGCTTCTGCAGCCGAGGGACCCCGCTTTGCAGCCTGCACCCCGGCTCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGTGCCCGCCGCTGTCTGTCGCCCGCCGGTGCGATGAGCCCAGCCCTGCTTGGACGCTGTTCACGCCTCTGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCCATACCTTGCTCCTGTCCTCTGTTTGCAGTTCCACTCTAGCAGAGCAGGGTGGGCTCCTCCCCTCTGTACG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTAGAGGAGCCTGGTCACTGGCCCATCTCAGTAGTGAAACTGGAGGTTTGATGCACAGGGGATTCTCAGTAGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGCGCCAGTGCCTGATTTATCGTGAGAAGCAGTTTAATATTTCGGCTATAAAAGGCTAGAACTAGTTCCTAATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGAAGGTGTGCCAGGTTGTAAATTGTCAGGTTGCAAGTAGGGATGAGCACGCCAAGTTTTTGCGTATAGGTCTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGAAGTTTTGGGGGTGGGGGAGGATGCGGTACCCCAGACCTGTTTCCTTGTCTGCCCAGACCTTGCCATGGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TAGCTTTCCATCTCTTGTGACAGTGTCTCAAGGAGCAGTAGACATTCTTTGGCTGCAGCAGATTTCGCATTGTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCCTGATTGGAAGAGTTCAGTTATGAGGCTTCTGGTTGCCAGTTACTCCTTTCTTTTGAAGAGAAAGAACTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATCATTTGGATAAGGGATGGGCGTTGGAAGGAGTAGTTTTCACTTTTTATGTATTGTATAAGGCAGTTATGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTGAACTATTTATATATGATGGAATAAACAAAAACAAAGCAAGAGCTGCTGGAGGTTTGGATAGTCCTACTCAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTGAAGTAATCAGAATAGTAGTAGTATTGGCAAGTTCTCAGGGTGGGAGATCTGTGGCTTTAGCCACCTGGAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAAGTCTGCGTAATGGTTTCTCAGTGACAGGAGATTCCCTCGGTTTTAATCCAGTAGTTCCTAGTTATTCCAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCTCCAGTTTCCAACCGGGTCATTTAGGCCCTTGCAATCTTGTGGAATTCTTATAAATTCTGTTACCAGGTTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTTGTTGTTGTAAGGAAAAATTCCATTTTGTTATCTTTTTTTTTTTTTTTTGGATACAGTCTCTCTCTGTCACC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAGCCTCTGCCGCCTGGGTCCAAGTGATTATCCTGTCT 1258
Query 1 ----------------------------------------------------------------------ATGG 4
|..|
Sbjct 1259 TGGCCTCTCTAGTAGCTGGGATTACAGGCACCGCCACCATGCCTGGCTAATTTTTCTGTTTTTAGTAGAGACAG 1332
Query 5 GGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC------ 72
|||||||||||||.||.|||||||||||.||||||||||||||||||||||||||...||||||||||
Sbjct 1333 GGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGTCTCAGCCTCCCAAAGT 1406
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1407 GTTGGGATTACAGGTGTGAGCCACAGCGCTGGGCCCTAAAACTGCATTTTGTTACCTGTTAATATGAAGCATCT 1480
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1481 TTGTTGTTTCCCAAGACACTTCCTGTTTAGGTCCACAGTGAGTTTTAGGAATTAAGTTTAGGAAAGTGGAACAC 1554
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1555 AATTTTGGCACATTGTCTTTTTTTTTTTTTTTTTGGAGACGGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTG 1628
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1629 GCGCGATCTTGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAGCAGTTCTCTGCCTCAGCCTCCTGAGTAGCTG 1702
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1703 GGATTACAAGCACATACCACCATGCCCGGCTAACTTTCGTATTTTTAGTAGAGACGGGGTTTCACCGTCTTGGC 1776
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1777 CAGGCTGGCCTTGAACTCTTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTCA 1850
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1851 ACCACCGCGCCCAACTGAACACTGTCTTTATAAAAACACAGTCCTTTCAGATGTCGGGACTTATTAATAATTAA 1924
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1925 ATATATTCAAATTTATTTGCAACAAAAAATTACCTTTCATAGAAATGTTACATTAAAAAATATATTTTAACTTA 1998
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1999 TACTTGATGTCATTGGAACTTTGTTAAACTTTGTTTATATTTTAGTGAAAGGAGAGGAAAATGTTCGATCAGAA 2072
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2073 AAAAATATATTTCTAATATATTGAATATTATCCTATCATTGCCACATATTGTGCACTATCAGAATTACATATCA 2146
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2147 TCTTTGTCTTTTCCTACTGTGGGAGTTCGATCAATTTGTAAAACAACATAAATTTTTTTCTATGGGCCAAACAG 2220
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2221 TGATTAGAATGGCTGAAACATAATACTGCTCTGAGGTAGCTGAAGCTAATGGTATTAAACACAAAGCCATATGG 2294
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2295 TAGATCTGCAATTAAAAAAAAAATCACATATAATGGAGGAACTGACATGCAGTACAATTTTATAAATTATGGGT 2368
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2369 TGTTGTAGCCTGTAGTTTTAACATGATACAAACATCACATAATTATCCTATAAAGGTTAATTTCATTGCTACAT 2442
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2443 TGACCTGACAGTTGCAGGAGTACAATAGCTGTCAATAAGATAAAATTGTGTTTTTGGTGGTTTTGGAGAAAGCT 2516
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2517 TTGAGGACTTGTTTTAGGAAAAGGCATTTAATCTATTTACAACATTATGTTTTGGTATTACTGGCATTTCTTTT 2590
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2591 AAAGTAATTCAGCATATTATCACTATAAGCTCAGAATTCCCTTTTCCTAAATAGAAAGTGACCTATTTTACTGA 2664
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2665 CTTTTAAAAATGTAAGATTACATTACATTTAACAACATCAACTGTCCATTGCAAACAGCAGTGAAGGAGACCAG 2738
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2739 TGGTGCAGGAGATACAAAACTTTTCACGCTTACTTTTGGAAGACACGTGTTATATAGCAAATGCGCCTTTCTGG 2812
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2813 TGGAGTCTGTTATATTAAATTTGATTTGTATTCATTTTACTGACAGCAGGAGATTGGTAGCCTAAAATCATGGT 2886
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2887 AGCTTCAAGAGAGTTTTCAACCTGGCATAAATTTCCTTTTTCTGTGAGGAATCCACAGGTAAGAATTGACTGTT 2960
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2961 AGAACAAAAAGATGATTAAGCACTTCATAAGTGCAGGGTTTTGTGAAAGTGGTTCATAATTATAATGTGGATAC 3034
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3035 ATTCCAGATTCTGTTAATGACCACCTCAACATCATACAGTATAGCCATTTTAATATGATGATGTTACGTCAACC 3108
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3109 TGTTGTACAACTACTTTATAATTTTACTGTGGGTGATGTGTGTTGAAGTGATCATTAAACATGCCTGTGTGCAT 3182
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3183 GTGTGTGTATATGTTTCTGTCCGTATGTCATCTTTATCATCAGTGTGAAACACGACTTCCTCTATATACACGTT 3256
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3257 TGAATTATTAGTTCCTTAAGTGGATCTGATAAATCCTTGGAAAAAGAAGGAGAATTTTGAGAAGTCCTGTGTGT 3330
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3331 TAGTTCCTCAAGTGGATATGGTAAATTCTTGGAAAAAGAATGAGAATTTTGAGAGATAATGTATATTTGATTCC 3404
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3405 TTTCTGAAATGGAACATAGTCTTGCCATCTGTCTTTGGCTCTTTTTATGACTGGTTCTGTGACTATAGAACAGG 3478
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3479 CCATATACATTATCTGAGCGCATGAGAAAAGCTCTACAGAGAATGGTGGTAGGCTGGTATGAAAGGCGCGATGT 3552
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3553 TGTTGTAGGGCATCGAGCCCCGGGCCGTCACCGTCACCTCGGCCGCTGCCGCTGTCACCATGTCACCATCGGGG 3626
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3627 CCGCTGCCGCTGTCACCATCGCCTTGTTCCCCCATCCCCCGCCATGGCTGAGGACCTCTCCGCGGCCACATCCT 3700
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3701 ACTGCCCCGTCTGTCAGGAGGTGCTCAAAACGCCCGTGCGGACCGCGCCCTGTCAGCACGTTTTCTGTAGAAAA 3774
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3775 TGTTTCCTGACTGCAATGAGGGAAAGCGGAGCACATTGTCCCCTGTGTCGTGGAAATGTGACTAGAAGAGAGAG 3848
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3849 CATGCCCTGAACGGGCCTTAGACCTTGAAAATATAATGAGGAAGTTTTCTGGTAGCTGCAGATGCTGTGCAAAA 3922
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3923 CAGATTAAATTCTATCGCATGAGACTTCATTGCAAATCTTGTAAGAAGTATCAGGATGAATATGATGTTTCTTC 3996
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3997 TATCATTCCAAACTTTCAGATCTCTGAAGATTCAGTAGGGAACAGCAATAGGAGTGAAACATCCACATCTGATA 4070
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4071 ACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGTCATCCTACTTATAAGTGTCCCCTGTGTCAAGAATCA 4144
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4145 AATTTTACCAGAGAGCGTTTACTGGATCACTCTAACAGTAATCACTTATTTCAGATAGTTCCTGTGACATGTCC 4218
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4219 TATTTGTGTATCTCTTCCTTGGGGAGATCCTAGCCAGATTACCAGAAATTTCGTTAGTCATCTAAATCAGAGAC 4292
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4293 ATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAAGAAACTCAATGTCAAACTGCTGTTGAAGAA 4366
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4367 TCATTTCAAGTAAACATCTGAAGGCTGTAGACATCTCTGCATCTTTGTACCTGCAAGTGCCATCTTTAAGGGGG 4440
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4441 AAACTACATGAAGTCACCGTTTCAGTAACTTGATGTGTATATTAATAAAAGTAATTCAGTCATTTTAGTTTTTG 4514
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4515 ATTGAAAATAAAGGTAGGGCTTCTAAAAACTTCATCCTCTTGGTAAGTTAAAAAATGAAAGTTATGACATTAGC 4588
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4589 TTTAAAAGCGTAAAAGATGTTTCACTAATGTAATGGTGAAAGAGAATCCCTGTTGTACTTTATCTTTTTGTAAT 4662
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4663 ATTAAATATTCTTGAATTTTTCATTATGTTGCTTTTGAAATTTGGTACATTCCTCCCATTTACTTTATTATTGT 4736
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4737 ACACATTAAACACACAGTAGCAAATTTTGAACGATGTGATATAATCTAACAAATCTGAGCCAGTTATTAGAGTT 4810
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4811 GCAGAATAGAAACTTGAAGTGCTAAATGGAAAAATCCAAAGGAAATTTTTTAAATGCAGATTCTAGCTGAAAAA 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 TTCAACTATAAGAAAATCGTATTTATATAACATTTACTATTTTTGAAGACTAGTAATAATTTTAATTCTTTAAA 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 AAGTGAAAGCTTGTTGTAAAGATATTTTCTTTTTGTTATTAGAAGGAAATACAGAGAGAAAAATTTATTTCTTT 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 CATGGGCATTTGGTAATTTCAGTCTTTGACTGATTTGTAAGCCTAGAATATACTAAGCTGAATAGCAGCTCTTT 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 GGCCTCAGAATTTTCAGTAGCCAGTATTTCTGATTAACTAAGTTGAAACTCTTATTAGAAACTTTCAGTTGGTA 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 TTACTGTATTCTAGAAGATATAAATGAGAGGTTTGGCTTCATCTCAGTTTAGAAATTTATTCAAAGCTAAAGAT 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 GTATATGTATATATATATACTTTTGTGTGTATATATACACGTATGTGTGTATGCAGTTTTTCAGGTTATATATA 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 GAGTTTCTATAAGGATTTTTTAAATGGACAAGCAATAGGGGGTTGAAGTGTTTATCTGATTTGTTAAAATTTTG 5402
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5403 TGTATAACCAGATTTTTAAAAAGTGATAGTCACAGTGCTAAGTGATCTAGTTGGCTGCTATTACACCTTAGAAA 5476
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5477 TTGAGTTTACACACACACACAATTACCTGTTTGTATGGTGCTCATTTCTTATTCTCAGATATAATGTGTGACCG 5550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5551 TGATACAGTGAGAAAGATTCTACCAACCACTGTTTCACTACTTTTTAGTCAAAATTGGGTATGTTCTTAGTATT 5624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5625 CATTAGTGAGAATCATAAAGTATTTTGTAGAAGGCCCAAATCACAGAATAAAGGACTAAGAGTGGATTCACTGA 5698
Query 73 --- 72
Sbjct 5699 CAT 5701
