Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- NR_003090.3
- Aligned Length:
- 5717
- Identities:
- 64
- Gaps:
- 5645
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAACCCTCAGGGACCTGGTATAGACGCAGAATCTGTTTCACACAACAACTGCTATTTGAAGGAAAAAAAAAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGAAGCAAATGATACCAAGACAAGCTCATAACAGAGATCCAATCAGCAGATGTGTACGGATGAAAATACAGTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GATGAGTCAGAAACCGGCCAAGGAGGGTCCCAGACTCTCCAAAAACCAGAAGTACTCCGAACACTTCAGCATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTGCTGCCCGCCGTTCACCTTCCTCAATTCCAAGAAGGAGATAGTGGATCGGAAATACAGCATCTGTAAGAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCTGCTTCTACCAGAAGAAAGAGGAGGACTGGATCTGCTGCGCCTGCCAGAAGACCAGATTGAAAAGGAAGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGGCCAACCCCAAAGAAGAAGTGACCAAGGAGGAGTTTAAACTGAATGAACAACCTCGGCTCCTGGACTCATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTTCACAACCCATCTACCCCTGGATGAAGTTATCTGGCTTCAAATATTATGCAGGGGCAAACACCTGCTGATG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGCAACTGCTGATGCTCATGGTCCCCATGGCATGGGGGCCTCAGGGCAGCCTGCCTGGAGTACTTTGAAGATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCATCCCATTGTCTTCTGACCTCTATAATTGCCACTGAGAGATCTGCTGTCAGTCTGCTTATCCTTCCACGGAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCAAGTTTCTTCAATCTGAAGATACATGTCTTTCTCCAGGGACATGTGGAAAAAAAAAAGATGTTATACAACCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCAAAGTGGCAAAAATAAAAAAAATCAAGTATTGGCAAAGATGTGGGGAAAATTCTCATAAGCTACTGATGAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATTTATAAATTATTATGACACCTTTGGGTTGCAATCTGGGGATACTGGCAAAGCAGAAAATTGTACAACCTGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATCAAGCAATAATAATTTTAGGCACCCATCCTAGAGAAAACTTGAATTCATAGAAAAAGTAGGTACACGTAAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTGTTCAAGGAATCATTGTTTGGCATTGAAAATAGGAGAGAGATCATGAGAAATTACCAAAATGTCCACCAATA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAATGAGTGAATCACCTGTGGTATATTTATAAATAAAAATATTAAATAGAAGGTAAAACAAATCAGACATACAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACATTAGATAGATAAATTTAGAGGACAAAATAAGGAACATGAAAAGCAAATAGTAGATGGCAAATGTAATATAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TATACTATGCATAAATTTTAACAACACACAATATTATATTGCATATTGCCCAATAAGCAGAAGCCATAAGGTCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACACTTTTCTTATAATGCAATAGAATAAAAATGACAACAAAGTAAAAGGGTATCCCAAAAATAAAACTATCCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTGGAAAAAAAAAGATTTAAAATAATTCCTGGTTTGAAGAAATAACAAATTAAAAGCTATATATAAACGGTTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACAATATTAGGTGGACATATTTGTTTGAAGAGATAGGTGAAAGATAGTTGAAAAGCCTGGGGGTATATTCAAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTATATGTCTTAGAAAACAAAAATACTTGTTTGGGTTCAGTTTTGGATCTGGGCTTGTTCTTGTGGCTTCTGAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GATTTCTGACTTGGGGAAAAATGGGGAAGAGTTGAAATACGTCCTTCCACCCAAACCTTTGTTTAGTAATAGGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGAAAATGAAGAAGAAAATAGAATGTTGCAGAATGTGGAGGGATGTAAAATGGACAGTACTAGGGTAGAGGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGTCAGATTAGAGGAAAGAAAGAGCATCAGGAACAGTCTTGTGCTAGGAGCTGGTGTGGCCAAGCACAGTCGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATGCCCAAAGATCCAACAAGGCCATGGCTCTGTGTCCTTGAGTGGGCACAACCATTCCTAGCCAAGTTTAAGAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCAAGTAAAAATATAGGGGCAATGTCAGATGAAGTCTTGTTCAGGGTATGGGGCTAGGATGAGAGAGAATGCCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGAGTATGAAGGAAGAGTGATAGATCCAGATGAGATACAGCTCAGAGTGCCACGCCCCCAGAAAGAGGAATCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGCAAGTACTGTCCCAAGGCAGCTGGAGGGTGAGGGCTGAGTGCCCTGGCTTCCTCACTTGGGGAGACCATGGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTCTGTAGAAATTCCAATATAAAGGCAGGGAAATTTGACTGCATGGAGTCTTCAGGTAGAAATGTTTCTCTTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCTAAATTCAGGTGCTAAATAAACAACAAAATGGTAACCTCTACTATGAAGTGTTTCCAATGATGGGATATCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGGCCATTACATTCCTGGGAATAACATGGTGAGGTGCAGGGTGGTGGTGGTGGTGAAACATACGACAGACCACT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTAAGTGAGAACAAATTACTGGCCCAGCCCAACCCACACCAAATAAGAAATTTAATATCCCTTTGGCCTGTTTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGATTTTGGCAAAGCCAGGCCCATAGTGCTTGCTGGGCTCTCTCTTCCACATCATCCAGAAGACACACATTTGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TATGGAATGATTGTGGAGGTGAGAGTATAGTGCATATTAATTCATGCAAAAAGTTAGATATTAGCCCAGAAATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTAGTAACAAGAAACTACTGAATTCTCTGTTTGTCTGTTGTGGAAATAAAACCTTCTGGGGATGAATCAAAACT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATCTGACAATTACTTGAAATGGGTGAATAGCTAAATGTAATGTGCCTTGGATATTATAACTAAAAGGTGCTATA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATCCAGTTATATTTTTTATCTTTTAAGGATTGGTTCTGAGGAGCACTACCAGTAAATATTGCAAAAATTACATA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAGCTCCAAAAGCTACTCTGTGTAAACTTCTTGAGTGGGAATTCTCAACCATAATATCTGGAATATGACTGATA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATTCTGGATGTTAACTGATTTTATGTTCTGATGTTTTGACTGGTTTTGGGAAAAATTTTGGGAAAAAAGAGTTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCCTCGTAAATACCCAACAACTGGGTCTCTGGGTAAAAAGGCCTAATTTATAGAGATTGCTAATTTCCATGGTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAAATATTTCCACAATGCAGATTCCTTCCTTCCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCTTGT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TACCCAGACTGGAGTGCAAAGGTGCGACCTTGGCTCACTGCAATCTTCACCTCCCGGGTTCAAGCCATTCTCCT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACGACCATGCCTGGCTAATTTTGTATTTTTAGTAGAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATAGGGATTCACCATGTTGGCCAGGCTGGTCTCAACCTCTGGACCTCAGGTGATCCACCCGCCTCGGCCTCCTA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAGTGCTGGAGATTACAGGCATGAGCCACCACGCCCGGACCATGATGCAGATTTCAAGCTATGAACATGATTCT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTGGAGTTTACCATTTGTCTTTTAATTGGCAAATTTGATGCAGAATTGGGAAGAGAAGCACACAATTGACTCTC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GTCAGCTGGCACAAGCTGGTGCCAGTGCACCACTGTATATATCCATGGCCCTCTGTGAAGCTAGAGTTTACTAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TAAAATTTGTGCTCCATAAATATACAAAGGCACTAGTAAGAGAAAAAATATAAAGAGAATATAAACTAAATTCA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AATTAGGGAGCTCAAATGGAGAAAATTGACAGATAATATTTTTGAAACTTTGAAAAGTAGTATTTGTCTAGATT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CACCTTTTATTACCTTTTCCTTTTTTTCTTTTCCTTTTTTTTTTTTTTTTGAGACGGAGTTTCTCTCTTGTTAC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CCAGGCTGGAGTGCAATGGCACGCAATCTCAGCTCATTGCAACCTCGGCTCACTGTAACCTTCACCTTCCGTGT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCAAATGATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCACCCACCACCATGCCCAGCTAATTCT 3848
Query 1 -----------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCG 57
||||||||||.||||||.||.|||||||||||.||||.||||||||||||||||||.
Sbjct 3849 TTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCAGGTGATCCA 3922
Query 58 CCCACCTCAGCCTCC----------------------------------------------------------- 72
|||||||..||||||
Sbjct 3923 CCCACCTGGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTGTTATTATCTTTTATTA 3996
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3997 AGCAAACAGCGTATCTATGTATCATACTGAGTGTTCTGAGCTGTTAGTTTCTTTGGTGTTCATCTAGATGGAAG 4070
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4071 CTGGGGCTTCCTTCCTTTCAGATATTGGTGCTAACATGAAGCTGACCAAAGAATTGATGGGATCTGCACACTGT 4144
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4145 AAAGCCGGTTTCAGGATGGCTGAGCTGACGGTCAAGAAAGAAGAGAAGATATGAGCCGCCTGCATTTTGGGGTG 4218
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4219 GTGGCAGTGAAATTTAGACTTGTGATTTGGTATGACAATATATGGCTTTTTGTGATTGTTAACATTAATGAAAA 4292
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4293 CAAGAAAAATTAGTTGCTCAAAAGTTGAAAAATGGATTCATAAACTTTTTATTAGAGTAAGGCAAAAGAACATA 4366
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4367 TTAAAATAGAGGTAAATTAGAAATGTCAATAAGAACCCATGGACATTTTTTATAAGGAGACTTTATCTGTTCTG 4440
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4441 TCCCTACAGTGATTTATGCTCTTGGATATTTTTGCTGTCATCCTGACAAATTCTAGTTGGAATATGGAACAAGC 4514
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4515 TTATTTGTAGACCTAGTGCCTGTGGCTTCTAAAGCAATTTTCTGAAAAGAGAAACCACTGCCTGTTGGAAGAAT 4588
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4589 AGTTGATTCCATACCTCAAGCTAGGGAAAAAAAATCAGAATTAGTCTGTGAATTCTAGATGTTGAGAGAAAGCA 4662
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4663 GGGTTTCATTAGGGCATCGGAGAGTCACAAGTCCATAGGATGCAAAAAGGAAGATGAAATAAAATTGCCTGAAA 4736
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4737 AACGCACCTGAATTTCTGGCATTGTTTACTGAAAAGGCTGTGTATTGATGAACCCCAATTATGTGAGGTCTACA 4810
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4811 TTTAAGAGTTTATAATCAACAGTTTGAAAATGCAGGGTGTTGTTTCTTTCTATAAGGAGACAAAACAGTCAGAA 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 GGGAGTGTCACAGGACATTATCACAAAATCAAAGTTCTCCATGAAATGTGGTTCATTTGCTAGAAAATAATGCA 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 AGCCTATTGGAGAGAATCAGGGCTTCTAGTGATGCTAGGGATGACCTTAAGCATTGTTTGTAAATCACACTTTT 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 TCCTAGTCTTTCAGCAGCAGCTGCACAGAGTAGGCCTGCTTCTTCCCATGAAAGCCACACTGAGTTTTATCAAC 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 TAGTAGTGTGTGGGCACTATTGCAAGTTATGTTGTGTTGTTTATGGCCATTTATCCAACAGTGCTTTCCTCTGT 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 GCGGGGCTCTGCAGCCTCGTTCTATGTTATTTTTATTACCACGTGTCTGTGCGCCTCAGGTGGCAAAGCAGAAT 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 CAGCTTCTCTACCCTCAGCAGGGCTCACTATGACTCACTATAAGGGAAGAAAATCTTACAGATGTCAGAAAATG 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 TTAGGTAAGTGGACAGTGATAAACACAAAACAGCAAGTGGTCAGTATCAAAGAGAAAAACAGTATGTTGGTGAA 5402
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5403 GGAGAAGTATCAAAGCTAGTTAAAAAAGTAACAGGAGAAATGTAAAGGGACAATACTCCACAAAAATTTAGATT 5476
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5477 GTAACTGAGCTTCTTCTCCTAAAGAGATTTAAAAATAAAGTATAGGAAATACATGAAGAAACAAAGTAAAATGC 5550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5551 CAAGGTGTAAGTTTGACCATGAATATCTAGGGAAAAACATACTTGCACTAAAACAACCAAATATGCAAAAATCA 5624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5625 AGTGGAAAAACAGGTCAAAATAATGCCAGTTGATGTCTGTAAGAACTAAATGTATAATAAAATGAGCAAAAAAA 5698
Query 73 ------------------- 72
Sbjct 5699 ATGGCCAGTTTAACACCAA 5717
