Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10261
Subject:
NR_003090.3
Aligned Length:
5717
Identities:
64
Gaps:
5645

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAACCCTCAGGGACCTGGTATAGACGCAGAATCTGTTTCACACAACAACTGCTATTTGAAGGAAAAAAAAAAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGAAGCAAATGATACCAAGACAAGCTCATAACAGAGATCCAATCAGCAGATGTGTACGGATGAAAATACAGTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GATGAGTCAGAAACCGGCCAAGGAGGGTCCCAGACTCTCCAAAAACCAGAAGTACTCCGAACACTTCAGCATAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTGCTGCCCGCCGTTCACCTTCCTCAATTCCAAGAAGGAGATAGTGGATCGGAAATACAGCATCTGTAAGAGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCTGCTTCTACCAGAAGAAAGAGGAGGACTGGATCTGCTGCGCCTGCCAGAAGACCAGATTGAAAAGGAAGAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGGCCAACCCCAAAGAAGAAGTGACCAAGGAGGAGTTTAAACTGAATGAACAACCTCGGCTCCTGGACTCATT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCTTCACAACCCATCTACCCCTGGATGAAGTTATCTGGCTTCAAATATTATGCAGGGGCAAACACCTGCTGATG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGCAACTGCTGATGCTCATGGTCCCCATGGCATGGGGGCCTCAGGGCAGCCTGCCTGGAGTACTTTGAAGATG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCATCCCATTGTCTTCTGACCTCTATAATTGCCACTGAGAGATCTGCTGTCAGTCTGCTTATCCTTCCACGGAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCAAGTTTCTTCAATCTGAAGATACATGTCTTTCTCCAGGGACATGTGGAAAAAAAAAAGATGTTATACAACCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCAAAGTGGCAAAAATAAAAAAAATCAAGTATTGGCAAAGATGTGGGGAAAATTCTCATAAGCTACTGATGAGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATTTATAAATTATTATGACACCTTTGGGTTGCAATCTGGGGATACTGGCAAAGCAGAAAATTGTACAACCTGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATCAAGCAATAATAATTTTAGGCACCCATCCTAGAGAAAACTTGAATTCATAGAAAAAGTAGGTACACGTAAAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTGTTCAAGGAATCATTGTTTGGCATTGAAAATAGGAGAGAGATCATGAGAAATTACCAAAATGTCCACCAATA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GAATGAGTGAATCACCTGTGGTATATTTATAAATAAAAATATTAAATAGAAGGTAAAACAAATCAGACATACAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACATTAGATAGATAAATTTAGAGGACAAAATAAGGAACATGAAAAGCAAATAGTAGATGGCAAATGTAATATAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TATACTATGCATAAATTTTAACAACACACAATATTATATTGCATATTGCCCAATAAGCAGAAGCCATAAGGTCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACACTTTTCTTATAATGCAATAGAATAAAAATGACAACAAAGTAAAAGGGTATCCCAAAAATAAAACTATCCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTTGGAAAAAAAAAGATTTAAAATAATTCCTGGTTTGAAGAAATAACAAATTAAAAGCTATATATAAACGGTTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACAATATTAGGTGGACATATTTGTTTGAAGAGATAGGTGAAAGATAGTTGAAAAGCCTGGGGGTATATTCAAGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTATATGTCTTAGAAAACAAAAATACTTGTTTGGGTTCAGTTTTGGATCTGGGCTTGTTCTTGTGGCTTCTGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GATTTCTGACTTGGGGAAAAATGGGGAAGAGTTGAAATACGTCCTTCCACCCAAACCTTTGTTTAGTAATAGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGGAAAATGAAGAAGAAAATAGAATGTTGCAGAATGTGGAGGGATGTAAAATGGACAGTACTAGGGTAGAGGGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAGTCAGATTAGAGGAAAGAAAGAGCATCAGGAACAGTCTTGTGCTAGGAGCTGGTGTGGCCAAGCACAGTCGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ATGCCCAAAGATCCAACAAGGCCATGGCTCTGTGTCCTTGAGTGGGCACAACCATTCCTAGCCAAGTTTAAGAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCAAGTAAAAATATAGGGGCAATGTCAGATGAAGTCTTGTTCAGGGTATGGGGCTAGGATGAGAGAGAATGCCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CAGAGTATGAAGGAAGAGTGATAGATCCAGATGAGATACAGCTCAGAGTGCCACGCCCCCAGAAAGAGGAATCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GGCAAGTACTGTCCCAAGGCAGCTGGAGGGTGAGGGCTGAGTGCCCTGGCTTCCTCACTTGGGGAGACCATGGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TCTCTGTAGAAATTCCAATATAAAGGCAGGGAAATTTGACTGCATGGAGTCTTCAGGTAGAAATGTTTCTCTTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTAAATTCAGGTGCTAAATAAACAACAAAATGGTAACCTCTACTATGAAGTGTTTCCAATGATGGGATATCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGGCCATTACATTCCTGGGAATAACATGGTGAGGTGCAGGGTGGTGGTGGTGGTGAAACATACGACAGACCACT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTAAGTGAGAACAAATTACTGGCCCAGCCCAACCCACACCAAATAAGAAATTTAATATCCCTTTGGCCTGTTTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGATTTTGGCAAAGCCAGGCCCATAGTGCTTGCTGGGCTCTCTCTTCCACATCATCCAGAAGACACACATTTGC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TATGGAATGATTGTGGAGGTGAGAGTATAGTGCATATTAATTCATGCAAAAAGTTAGATATTAGCCCAGAAATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTAGTAACAAGAAACTACTGAATTCTCTGTTTGTCTGTTGTGGAAATAAAACCTTCTGGGGATGAATCAAAACT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATCTGACAATTACTTGAAATGGGTGAATAGCTAAATGTAATGTGCCTTGGATATTATAACTAAAAGGTGCTATA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATCCAGTTATATTTTTTATCTTTTAAGGATTGGTTCTGAGGAGCACTACCAGTAAATATTGCAAAAATTACATA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AAGCTCCAAAAGCTACTCTGTGTAAACTTCTTGAGTGGGAATTCTCAACCATAATATCTGGAATATGACTGATA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATTCTGGATGTTAACTGATTTTATGTTCTGATGTTTTGACTGGTTTTGGGAAAAATTTTGGGAAAAAAGAGTTT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCCTCGTAAATACCCAACAACTGGGTCTCTGGGTAAAAAGGCCTAATTTATAGAGATTGCTAATTTCCATGGTG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TAAATATTTCCACAATGCAGATTCCTTCCTTCCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCTTGT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TACCCAGACTGGAGTGCAAAGGTGCGACCTTGGCTCACTGCAATCTTCACCTCCCGGGTTCAAGCCATTCTCCT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACGACCATGCCTGGCTAATTTTGTATTTTTAGTAGAG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ATAGGGATTCACCATGTTGGCCAGGCTGGTCTCAACCTCTGGACCTCAGGTGATCCACCCGCCTCGGCCTCCTA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AAGTGCTGGAGATTACAGGCATGAGCCACCACGCCCGGACCATGATGCAGATTTCAAGCTATGAACATGATTCT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CTGGAGTTTACCATTTGTCTTTTAATTGGCAAATTTGATGCAGAATTGGGAAGAGAAGCACACAATTGACTCTC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GTCAGCTGGCACAAGCTGGTGCCAGTGCACCACTGTATATATCCATGGCCCTCTGTGAAGCTAGAGTTTACTAC  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TAAAATTTGTGCTCCATAAATATACAAAGGCACTAGTAAGAGAAAAAATATAAAGAGAATATAAACTAAATTCA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  AATTAGGGAGCTCAAATGGAGAAAATTGACAGATAATATTTTTGAAACTTTGAAAAGTAGTATTTGTCTAGATT  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  CACCTTTTATTACCTTTTCCTTTTTTTCTTTTCCTTTTTTTTTTTTTTTTGAGACGGAGTTTCTCTCTTGTTAC  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  CCAGGCTGGAGTGCAATGGCACGCAATCTCAGCTCATTGCAACCTCGGCTCACTGTAACCTTCACCTTCCGTGT  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TCAAATGATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCACCCACCACCATGCCCAGCTAATTCT  3848

Query    1  -----------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCG  57
                             ||||||||||.||||||.||.|||||||||||.||||.||||||||||||||||||.
Sbjct 3849  TTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCAGGTGATCCA  3922

Query   58  CCCACCTCAGCCTCC-----------------------------------------------------------  72
            |||||||..||||||                                                           
Sbjct 3923  CCCACCTGGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTGTTATTATCTTTTATTA  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  AGCAAACAGCGTATCTATGTATCATACTGAGTGTTCTGAGCTGTTAGTTTCTTTGGTGTTCATCTAGATGGAAG  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CTGGGGCTTCCTTCCTTTCAGATATTGGTGCTAACATGAAGCTGACCAAAGAATTGATGGGATCTGCACACTGT  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  AAAGCCGGTTTCAGGATGGCTGAGCTGACGGTCAAGAAAGAAGAGAAGATATGAGCCGCCTGCATTTTGGGGTG  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  GTGGCAGTGAAATTTAGACTTGTGATTTGGTATGACAATATATGGCTTTTTGTGATTGTTAACATTAATGAAAA  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  CAAGAAAAATTAGTTGCTCAAAAGTTGAAAAATGGATTCATAAACTTTTTATTAGAGTAAGGCAAAAGAACATA  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  TTAAAATAGAGGTAAATTAGAAATGTCAATAAGAACCCATGGACATTTTTTATAAGGAGACTTTATCTGTTCTG  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  TCCCTACAGTGATTTATGCTCTTGGATATTTTTGCTGTCATCCTGACAAATTCTAGTTGGAATATGGAACAAGC  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  TTATTTGTAGACCTAGTGCCTGTGGCTTCTAAAGCAATTTTCTGAAAAGAGAAACCACTGCCTGTTGGAAGAAT  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  AGTTGATTCCATACCTCAAGCTAGGGAAAAAAAATCAGAATTAGTCTGTGAATTCTAGATGTTGAGAGAAAGCA  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  GGGTTTCATTAGGGCATCGGAGAGTCACAAGTCCATAGGATGCAAAAAGGAAGATGAAATAAAATTGCCTGAAA  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  AACGCACCTGAATTTCTGGCATTGTTTACTGAAAAGGCTGTGTATTGATGAACCCCAATTATGTGAGGTCTACA  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  TTTAAGAGTTTATAATCAACAGTTTGAAAATGCAGGGTGTTGTTTCTTTCTATAAGGAGACAAAACAGTCAGAA  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  GGGAGTGTCACAGGACATTATCACAAAATCAAAGTTCTCCATGAAATGTGGTTCATTTGCTAGAAAATAATGCA  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  AGCCTATTGGAGAGAATCAGGGCTTCTAGTGATGCTAGGGATGACCTTAAGCATTGTTTGTAAATCACACTTTT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  TCCTAGTCTTTCAGCAGCAGCTGCACAGAGTAGGCCTGCTTCTTCCCATGAAAGCCACACTGAGTTTTATCAAC  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  TAGTAGTGTGTGGGCACTATTGCAAGTTATGTTGTGTTGTTTATGGCCATTTATCCAACAGTGCTTTCCTCTGT  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  GCGGGGCTCTGCAGCCTCGTTCTATGTTATTTTTATTACCACGTGTCTGTGCGCCTCAGGTGGCAAAGCAGAAT  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  CAGCTTCTCTACCCTCAGCAGGGCTCACTATGACTCACTATAAGGGAAGAAAATCTTACAGATGTCAGAAAATG  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  TTAGGTAAGTGGACAGTGATAAACACAAAACAGCAAGTGGTCAGTATCAAAGAGAAAAACAGTATGTTGGTGAA  5402

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5403  GGAGAAGTATCAAAGCTAGTTAAAAAAGTAACAGGAGAAATGTAAAGGGACAATACTCCACAAAAATTTAGATT  5476

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5477  GTAACTGAGCTTCTTCTCCTAAAGAGATTTAAAAATAAAGTATAGGAAATACATGAAGAAACAAAGTAAAATGC  5550

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5551  CAAGGTGTAAGTTTGACCATGAATATCTAGGGAAAAACATACTTGCACTAAAACAACCAAATATGCAAAAATCA  5624

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5625  AGTGGAAAAACAGGTCAAAATAATGCCAGTTGATGTCTGTAAGAACTAAATGTATAATAAAATGAGCAAAAAAA  5698

Query   73  -------------------  72
                               
Sbjct 5699  ATGGCCAGTTTAACACCAA  5717

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