Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10261
Subject:
NR_028388.2
Aligned Length:
5084
Identities:
65
Gaps:
5012

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTAAGCTTCGACGCAGGAGGCGGGGCTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCTTGCTTGCCTGTGCGCGCGTGCGCGGACATGGCCTCAAACGATTATACCCAACAAGCAACCCAAAGCTATG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGCCTACCCCACCCAGCCCGGGCAGGGCTATTCCCAGCAGAGCAGTCAGCCCTACGGACAGCAGAGTTACAGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGTTATAGCCAGTCCACGGACACTTCAGGCTATGGCCAGAGCAGCTATTCTTCTTATGGCCAGAGCCAGAACAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGGCTATGGAACTCAGTCAACTCCCCAGGGATATGGCTCGACTGGCGGCTATGGCAGTAGCCAGAGCTCCCAAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGTCTTACGGGCAGCAGTCCTCCTACCCTGGCTATGGCCAGCAGCCAGCTCCCAGCAGCACCTCGGGAAGTTAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGTAGCAGTTCTCAGAGCAGCAGCTATGGGCAGCCCCAGAGTGGGAGCTACAGCCAGCAGCCTAGCTATGGTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACAGCAGCAAAGCTATGGACAGCAGCAAAGCTATAATCCCCCTCAGGGCTATGGACAGCAGAACCAGTACAACA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAGCAGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTAACTATGGCCAAGATCAATCCTCCATGAGTAGTGGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCAGAGTGGTGGAGGTGGCAGCGGTGGCTATGGACAGCAGGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCGTGGAGGCCGCGGCAGGGGTGGCAGTGGTGGCGGCGGCGGCGGCGGCGGTGGTGGTTACAACCGCAGCAGTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTGGCTATGAACCCAGAGGTCGTGGAGGTGGCCGTGGAGGCAGAGGTGGCATGGGGCCCTCGGGACCAAGGATC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACGTCATGACTCCGAACAGGATAATTCAGACAACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTGAGTCTGTGGCTGATTACTTCAAGCAGATTGGTATTATTAAGACAAACAAGAAAACGGGACAGCCCATGATT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AATTTGTACACAGACAGGGAAACTGGCAAGCTGAAGGGAGAGGCAACGGTCTCTTTTGATGACCCACCTTCAGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TAAAGCAGCTATTGACTGGTTTGATGGTAAAGAATTCTCCGGAAATCCTATCAAGGTCTCATTTGCTACTCGCC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGGCAGACTTTAATCGGGGTGGTGGCAATGGTCGTGGAGGCCGAGGGCGAGGAGGACCCATGGGCCGTGGAGGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TATGGAGGTGGTGGCAGTGGTGGTGGTGGCCGAGGAGGATTTCCCAGTGGAGGTGGTGGCGGTGGAGGACAGCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCGAGCTGGTGACTGGAAGTGTCCTAATCCCACCTGTGAGAATATGAACTTCTCTTGGAGGAATGAATGCAACC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTGTAAGGCCCCTAAACCAGATGGCCCAGGAGGGGGACCAGGTGGCTCTCACATGGGGGGTAACTACGGGGAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GATCGTCGTGGTGGCAGAGGAGGCTATGATCGAGGCGGCTACCGGGGCCGCGGCGGGGACCGTGGAGGCTTCCG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGGGGGCCGGGGTGGTGGGGACAGAGGTGGCTTTGGCCCTGGCAAGATGGATTCCAGGGGTGAGCACAGACAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATCGCAGGGAGAGGCCGTATTAATTAGCCTGGCTCCCCAGGTTCTGGAACAGCTTTTTGTCCTGTACCCAGTGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TACCCTCGTTATTTTGTAACCTTCCAATTCCTGATCACCCAAGGGTTTTTTTGTGTCGGACTATGTAATTGTAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTATACCTCTGGTTCCCATTAAAAGTGACCATTTTAGTTAAATTTTGTTCCTCTTCCCCCTTTTCACTTTCCTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAAGATCGATGTCCCGATCAGGAAGGTAGAGAGTTTTCCTGTTCAGATTACCCTGCCCAGCAGGAACTGGAATA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CAGTGTTCGGGGAGAAGGCCAAATGATATCCTTGAGAGCAGAGATTAAACTTTTCTGTCATGGGGAAAGTTGGT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GTATAAATGAGAAATGAAGAACATGGGATGTCATGAGTGTTGGCCTAAATTTGCCCAGCTATGGGGAATTTTTC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTTTACCACATTTATTTGCATACTGGTCTTAGTTTATTTGCAGCAGTTTATCCCTTTTTAAGAACTCTTTGATC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTTTGGCCCTTTTAATGGTGAGGCTCAAACAAACTACATTTAAATGGGGCAGTATTCAGATTTGACCATGGTGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGAGCGCTTAGCCACTCTGGGTCTTTCACAGGAAGGAGAGTAACTGAGTGCTGCAGGAGTTTGTGGAGTGGAGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CAGGATCTAGGAGGTGAGTGACTCCCTTCCTAGCTGCCCTGGTGAACAGCGCTTGGGTAGATACCTGCTATAAG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GAGACTGGTCTGGCTGGGTTACTTTCACATCCTGCCTGTACTCAGAGGGCTTGAGGTCATTGACATTATGAGAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTTAGGCTTGATCCCTTTTTGATTGGAGGGTGGAAGGCCCTCCTAAGGGAATGATAAGTGATAAGAGGGGGAAG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GGGTTGCAGCCAATGAGTTAAAACCTTAGAGCAGTGCTCCTCAGCCTCTTACCATGTGGTTGTAAACTTGCACG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TACCTGCCAACCAGTTATTTAGCATGCTTTTTATTTTAGTTACACAGAGCGTAACATTAACCCAAGAGCAGAAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GGTTTTATTTACAGGGTTTTCGAACTTGGTTTGTAAGACAGCTGCCATCACAAGCATAGCTTACAAATGTGCTG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GGGACCCCTAATTGGGAAGTGCTTTCCTCTCAAATTTTTATTTTTTATTTTTAGAGACAGAGTCTTGCTCTGTC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGTAGCCTCTGCCTCCTGAGTTTAAGCGATTCTCCTG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CCTCAGGAGAATCCCAGCTTCTGAGTAGCTGAGACTACAGGCGTGGGCCACCATGCCCACCTAGTTTTTGCATT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TTTAGTGGAGGTGTGGTTTCACTGTGTTGGCCAGGCTGGTCTCTTAACTCCTGACCTCAGGTGATCCACCTGCC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTGGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCGCTGCATCTGGCCATCCTCTCAAATTTTCAAGTGTTC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CACAAGTATGTTCTCTACTGAAGAGTTGCTGCATCCTTGAATCTTGGGTGATTTGAGGCACAGAAACTATGACT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TTATTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGTTTTTCGGCTTACCGCAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CTGCCGCCTCCTGGGTTCAAGCGATAGCTGGGATTACAGGCATGCGCCACCATGCCCAGCTAATTTATTTGTAT  3330

Query    1  -----------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACC  63
                       |.|||||||||||||||.||||||||||||||.|||||||.|||||||||||||..||.||||
Sbjct 3331  TTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATGTGCACACC  3404

Query   64  TCAGCCTCC-----------------------------------------------------------------  72
            |||||||||                                                                 
Sbjct 3405  TCAGCCTCCCAATAAACCATGACTTTTAAGAGGAATAGCAGGTTTACTTCCCCTGCCAGCATTGGGGTGCTCTC  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  TAAGCAACAGTAGGCGGAGAGTGGTCTGGCGTATTAAAAACAAAGGATCGTCAAGTGGGCCTTCCCAGGCATTG  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  CTTTGACTTAGTACATGTAGAGGATGTGGCAGTTCTCTCCGTCCCTGCCACTGCTGGTTTCTTTGTTAAATGTT  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  TAGTTGAAATGGCCTGATACGATATTTGAGTAGTTCACTGTTGGTGCTTTGCCTAGCAGGATTCTAATCTTGCT  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  TTGGTTGTGGTCCCCTGATGCCCTCCTGTTAGGAGTGGAGGAGGTCGAAGCTCCTTGTAAGATATGATTACTGG  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  GACCATTAGTGTCAAGTTCCTGTGTCCTTCAAATGGCATATGTGATTGGCCTTGACCTTAAAAGGAAATAGGGT  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CCCAGGTGACTGTTTAGTGGGTAGGTCCAGTTTGGGGGGATCTTCCAGGAGAATGGATAGAGACACCTAGCAGC  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  AGAGAGAACATTGGTGCCTCTCAAGCCAACCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCTTCC  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  TCGCTACCACACCTGGGTAATTTTTTTTTTAATTACTTTTTTTTTTTTAAGAAACAGGGTTTCACTGGGTTGCC  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CAGGCTGGTCTTGAACTGGCCTCAAGTGACCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATCACAGGTGTGAC  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  CCACTGCGTTTGGCCAGAATACTCTATTCTTACTGAATGATTGAAATCTGTCTTGAAGCATTAGGTGTCCCATT  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  TTTGTGAGTTGGAATTGGGACAGGCTAAGTAGGAAGTGAGGAGGGTGGGGAGAGCTGTGCTGTAGGTCTGTTTG  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  TCCCTTCCTTGATGTAGCCTTCAGTTAGCCCTTTCAGCTTTTTTCCCCATCTTGTGCCGGGCCTTCCTGGGTTT  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  CAGTACTTGGATGTAGGGCTGCAGTTATGTCAGTGGTGGGTAGATTGACCAGGAATTAAGGTCTAGGGTCCAGC  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  CCATGTGAGACTTGACTCACTGATCTACCTTTAGGCATGTCTTCCTTCCAGTCTCATCCTTTTTAAATTTTTTT  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  TTTTTTTTTGAGACGGTCTCACTCTCACCCAGGCTGGATTGCAGTGGTGTGATCTCGACCAACTGCAACCTCTG  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  CCTCCCACCCGCAAGCTATCTGCCCACCTCAGCCTCTGGAGTAGCTGGGACGGGACTACAGGCACCTGCCACCA  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  TGACTGGCTAATTTTTTTTTGTATTTTTTGTGGAGATGGGGTCTTGCCATGTTGCTCAGGCTGGTCTGGTCTCA  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  AAACTGCTCTGGGCTCAAGTGATTGTCCCACTTTGGCCTCCCAGAGTGCTGGGATTAAGGTGTGAGATACTGTG  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  TCCGGCTATGAAAATTTTATTTTTAATTAACTTGTATATATTTATGGGGTACAATGTCCTATTTCTGTACATGT  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  ACACATTGTGGAATCAAATCAGGCTAATATATCCATCACTTCATATCATTAGCATGAATGAGAACATACAAAGC  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  CACTCTTAGAAAATTTTGAAATTTATGTTATTTCAGCCCTTTTATGCTGGAGGTTGCAAATGTTTTGTGAATAA  5032

Query   73  ----------------------------------------------------  72
                                                                
Sbjct 5033  TCAGACCAAAAATAAAAACAAAAAATGATTGACTTCAGTCATTCAGTAAGAA  5084

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.