Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10261
Subject:
NR_049741.2
Aligned Length:
5556
Identities:
63
Gaps:
5484

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AATGCTGAGACAGACTCCCAGAAGATCTGAGCGAGTCGCGTAGCTGAGCCCGGCAGGGGCTGGGGTGGTGCTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCTATGAGCTGCACCATCGAGAAGATCCTGACAGACGCCAAGACGCTGCTGGAGAGGCTACGGGAGCACGATG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGCCGCCGAGTCGCTGGTGGATCAGTCGGCGGCGCTGCACCGGCGGGTAGCAGCTATGCGGGAGGCGGGGACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGCTTCCGGACCAGGTCAGGCAGAGGGTAGGAGTCCAGTGCTCTCGGATTCTGGGCACTGAAGGGTGGAGAGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGTATCAAGAGGATGCATCCGATATGAAGGACATGTCCAAATACAAACCTCACATTCTGCTGTCCCAAGAGAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CACACAGATTAGAGACTTGCAACAGGAAAACAGAGAGCTATGGATTTCCTTGGAGGAACACCAGGATGCTTTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACTTATCATGAGCAAATATCGGAAACAGATGTTACAGTTAATGGTTGCTAAAAAAGCGGTGGATGCTGAACCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTCCTGAAAGCTCACCAGTCTCACTCTGCAGAAATTGAGAGTCAGATTGACAGAATCTGTGAAATGGGAGAAGT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GATGAGGAAAGCAGTTCAGGTGGATGATGACCAGTTTTGTAAGATTCAGGAAAAATTAGCCCAATTAGAGCTTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAAATAAGGAACTTCGAGAATTATTGTCCATCAGCAGTGAGTCTCTTCAAGCCAGAAAGGAAAACTCAATGGAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACTGCTTCCCAAGCCATCAAATAACTGAACTCTGAATGATGGCTGGAGATTGTCTATCAAGGAAGGAAGTTACT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTCTTCCCATTCAAGTACTGTCCATTAAGTGTCTTGCCTCAGATTTGATTTAATCTTAATTAAAGGTATCAGGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGCAATTTAGAATTCCAGTCAATATTGGCTGTCCACAGTTCTCAGATGTGTTAATGTGAATACTACATGCTGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTTCACCATTCCTTTCTCAAAGAGACTACTTTTAATTTTCATTTCTGGGACCTTGATTTATATAAACTATGTTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCAGTTCTTTGTTATTTTTCACATCTCTGAAACTTTGAGCATTTTTTATAAGCCAGCAATTTATTTTACATAGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATTGTAAAATACACTTCTAGGAAATTTTAGGAAAGATTTAACTGTTTAAATCTATTTGGCATAAACCTTGATTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTTTTTTCCATTTGACAAAAATAATACAATTCCACAGAACTAGATCAGCAGATTCTCTGATTTGTAATGTCATT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACCTGTGACATTTTAAGTCTCTCTGGTGCTAAGAATTGGCACTTTATAGCCTGGTGCCTTTACTTTTAATTTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGAGAACCTACTGCTAGTCCCAGGAAACACACTTGGAAATAAGTCAGCTATTTTTTTTGCCCAGTGATGCTATA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GTTGTCATATTGTCCAAAGTTCATATTGTTCAAAGCTGAGGAGCTTGTCCTGTGTATGTGAATGCACACATGTG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CACTTAGTTCAAATACTAAAAGTAGCTTTTATTAAATATAATCAGCCAAAAACACACACAAAATAAAAAAAACA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AATATAAGTAGTCAGTTTTTCAATGTTATCCTACTAGTTCTACATTCTATTTTAATTTTTATACAATTTCCATT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTATAGTTAAGAACCATCACTTACTTGGATTGGATGTCTTTCATTCCTAGCACTAATAGTTGGCTTTCTTTTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTGTTTACATAGAAGCAGGGTTTTTTTTTATCTTTTTTCTTTTTTTTTGTTTAAGCTATATAAAAAGGTGAGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAGCAGTTTTGTTACCTAATGAAAATTATTACACTCATAATGCTGTGTAGGCAACATTGAGATTCAAATGCCCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GTGGTCAACTGGGTTCACTCATCAACTCATTCCCGTCCCAGTTTACTCACATTTCAAATTTATAAATTTCTTCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGTTATACTATTCTATTTAGATTTGCCCAGAATTAGTTGAAATAATGCTAAACCTGTCAATATTTTCCAGTAAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATTAAGCACCATACTGCATGGGAGAGACACAGTACTAAAAAGAGTTGTTAGTGCTTTATGTGAGTGATATTTCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTCGTAATGCTATAAAGAACTACAGTTAAAATAACAAAATATTTTAAAGATGTCCTAAAAGCATCTGATCCCAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TAATAACTAATGGATGTCATCTAGAGCAGTGGGTGTTAATGAATAGGTATATGTCATTTAAGAATTTTTCAAAT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTCTGTTTGATATCCTGCATAGAATTTGACAAAAAAAACACTTCCAAGTGTGAGCATTTTTTATTTCATTTCCC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AAGAGTAAGTAAGTAACTATTAGCCCAGCCATCTGCCTCGAAGTATACCTTAAGTGACCCCATAAATCCATTCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGAGGCAGGTACTCTATACCATTTGGCAGCCACGGCCAAACCTACCATGGCCAGATTTCAGTGAAAATGATGAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GTAATCAAATCAAGGTATAATATGGTGTCCCTTTATGTGCTTTATGTTCCTTTAGAGCTGTTTATAAAGTTCTT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TATATCTCAAGTGTTAGGATAAATCGACATACTAACTTTTCCCCCTGCAAAATTAAAAGCCTGAGGTACAAGTC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TAAGAAGCTTTTAGTGCTCTACATAATATAAATTCTGGCTGGTGTTAATGCTATGAAGATAATATGTAGTTAGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAATTGAGTCGGGGAGGAATGCTCTTCATTTTAAGTGGATTTTAAAGTTTCTCCTTGAGTGGATGAAGAACTTG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CCTGGTTTGCAAAAATCTTAGTTCAAAATTATATTTTCTAACAAAAACTGCATTTTGAGAAGATAAGCTAATTT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TACTCAGTAGTAAGTCAAATGAGGAAGTGCAGAGGGTTTTTTTACATATATATAGCAACCTTGTCAAGTGGTCC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCACAAGAGTCATAAATACTTTGTAATTAGCACAGTATATTCAGCAGTGTATAACTCTACAAATAGTACCTTAT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ATTAGTGTAGTATTATATCAATATCTTATGTATAATTCTTATATTAATACCTTATGCATAATTGGATTCAAACA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTGAAGGTCTATTTTAGTGTTCTTCAAAATGTGCTTCCCTGACCTACTGAAATAGAAACTTGGTGATGAAGTTC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AAGAATTTGTATTCTAATCATCTCAAACAATTCCTAAAGACACTGATTTTAAAATATCTAGTCTAGGCCCCATT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GTGTAATAGTTAGCACTCTAAAAGATGAAAAAGAAAATAGTCTATGTGCCAACCACTTCATTAGTACTTATGAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TTTAAAAATGAAAAAGTCTGGTACAGGAGACAAGTATATATATAAAATTATAATGCAGTGTGATAAATCCATTA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TAGTATGTATAAGATACAGAAGAGGGACTTTAAACTTGAGAATTCAATAGAGATAATAAATGGGTAGGAGGGAA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ATAGAAAACTTTGGTGCCACAAAAGCAAAGTATGTATGGTATTGCCAATAATAGCTACCATCTATTGAGTGCTT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TACTACCTGTCAGGTACTGTATTATATAAACTCCATTTTAACTGTACCTCATTTTGCAGATACTCAGGCACAAG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GAGGTGGTTATTTGTCCAAACTGGAACCAAGATTCAAACCCAGACAGAGTCTTAAGCACATTTTTAATCACTAA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  CTAACTTGAGATGCCTAAATGCCAAATACTGTTGGGAGTTCAAGTGGTTCTTGATTAGCAAAATCTATTTTTAT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TAGTGCAAAAGAAACACCACAGCTTATAAAGTATTATGAATTCAATAAATGGAGTCTTAACTAATGAGATATTA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TTTTCTAGAATGGTGTAGCTGAGAGTATGTGTGATTCAACTGAAAGGAATAATGTTTAATCAGTGACTCTTACT  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  ATATACAGGAAAAGGTGCAGTTCTGTCTTTCAAATCTGCCTCCTTACCATATTGGCTTACATCCCTCATGCTGT  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TTTCTTGTGTTTGCTAGAAAGTTGTTGCCAAGCCAAATGTCATGGCCATGTTGAAGGCAAGGAAGAAAAAATGG  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  AAATGGCCTGTGCCAGCTATATATATCGCCTTTTATGAGGGAAAGCAAAGCTTTCTCAGAAATCCCAAATGGAT  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  TTTCCCTTGACTTAATTGCCTGACCAGTTAAATGGCCACTGGTACCTGCAAAGAAAGCAGGGTACATAGCTGTC  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  CCAAATAAAATCAGTATTAGCAAGAAGAAAGAATATTGAGAAAGCAATTAACAGTGTCTGTGACTGTGACATGT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  CTGTGACTTTATATTGTCAAGTCCTTTCCCCTTGAATATAGTTTTGGAAGAATTAGCTGAAGGAGTGTGTTGAC  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  ATTGAATGGCCAAGAGAATGGGCTGTAGCAGACATCTGTCATTTCTCTTTTGGCTGCCCAGTATCCTAACTCCT  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  GTGTTTAAGGAATCCCTCACCTAATGAGGCAGAGCATTTCTTCCTCCTAAAGAATTTGAAAGTACCAGGTAATG  4440

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4441  TTTTCTCAGCCTCCTTTTGCAGCTAAGGAAGAAACATCTGCCTTCAATTTTAAAATTAGTGATACAAAGAAGGA  4514

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4515  GGGAACCATGCAGATTCCTTTGAAGATGGTGATTAACAACACTACTGCATTCATCTCCACAGAGGTACAGCAAA  4588

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4589  AGTGATTTAGTTAGCGATAACCTCTAATTCTATTTTTTTATTTTTATTTTTTGAGACAGTCTTGCTCTGTCAAC  4662

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4663  CAGGCTGGAGTGCAGTAGCACTGTCTTAACTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCT  4736

Query    1  ---------------------------------------------------------------------ATGGG  5
                                                                                 |||||
Sbjct 4737  CAGCCTCCCAAGTCGCTGGGATTACAAGTGCCCACCACCATGCACAGCTAATTTTTGTGTTTTTAGTAGATGGG  4810

Query    6  GTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC-------  72
            ||||||||||||.||.|||||||||||.|||||..||||.|||||||||||||||.|||..||||||       
Sbjct 4811  GTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTTATGACTTCAGGTGATCCGCCCGCCTTGGCCTCCCAAAGTG  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  CTGGGATTATAGGCGTGAGCCACTGTGCCTGGCCTGTAACCTCTAATTCTTGTTTGCTGGCTGTCCTAGAGATC  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  CTGAGAATTACTTTTAATAAAATCATTTTTTTGCTGTTATTAAAACTAACCTGAATTGCCTAAAACCAAGAACT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  CTGCTTGATAAAATAAGCATAGTTTTAGGAACAGCCATGCAGATATAAATTTTATCAACACTTTATACATAATT  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  TGGGACTTATATTTAAATGTAATATTTGATGCTTATAAAAGGGTAAATGGGGAATGCAAATAAATTATCAAGCA  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  TAATAACTCATCACCTAACTTAAGAATAACATTATGAGTGCTTGTATTTTATCTATTTGAGCTCTTCTCCTATC  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  TTTGCCGACCCCCCCGCTCTCTTTTTAATAGATTTGTTCGAATGTAGAAAGACCTAAAATACATATGTATCCCT  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  AAAGTGACTTATTTTATAGTTTTCTTTCTTTTTGAACTTCAAAAAAATTGTATCATACTCTATGTAGTCTAAGG  5402

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5403  ATTTGGTTTTTTTCACTCAACATGTCTCTAGAATTCACAAGTTTTATTGTTTTATAGCTGTCATTTTCATTGAT  5476

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5477  GTATATTTCATTGTTGGGTTATACAACATATTGTTAAGGAATACATACATATATAATAAATTATACATTTTTTA  5550

Query   73  ------  72
                  
Sbjct 5551  AAAAAA  5556

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