Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- NR_049741.2
- Aligned Length:
- 5556
- Identities:
- 63
- Gaps:
- 5484
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AATGCTGAGACAGACTCCCAGAAGATCTGAGCGAGTCGCGTAGCTGAGCCCGGCAGGGGCTGGGGTGGTGCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCTATGAGCTGCACCATCGAGAAGATCCTGACAGACGCCAAGACGCTGCTGGAGAGGCTACGGGAGCACGATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCGCCGAGTCGCTGGTGGATCAGTCGGCGGCGCTGCACCGGCGGGTAGCAGCTATGCGGGAGGCGGGGACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGCTTCCGGACCAGGTCAGGCAGAGGGTAGGAGTCCAGTGCTCTCGGATTCTGGGCACTGAAGGGTGGAGAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGTATCAAGAGGATGCATCCGATATGAAGGACATGTCCAAATACAAACCTCACATTCTGCTGTCCCAAGAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACACAGATTAGAGACTTGCAACAGGAAAACAGAGAGCTATGGATTTCCTTGGAGGAACACCAGGATGCTTTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACTTATCATGAGCAAATATCGGAAACAGATGTTACAGTTAATGGTTGCTAAAAAAGCGGTGGATGCTGAACCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTCCTGAAAGCTCACCAGTCTCACTCTGCAGAAATTGAGAGTCAGATTGACAGAATCTGTGAAATGGGAGAAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GATGAGGAAAGCAGTTCAGGTGGATGATGACCAGTTTTGTAAGATTCAGGAAAAATTAGCCCAATTAGAGCTTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAATAAGGAACTTCGAGAATTATTGTCCATCAGCAGTGAGTCTCTTCAAGCCAGAAAGGAAAACTCAATGGAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACTGCTTCCCAAGCCATCAAATAACTGAACTCTGAATGATGGCTGGAGATTGTCTATCAAGGAAGGAAGTTACT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTCTTCCCATTCAAGTACTGTCCATTAAGTGTCTTGCCTCAGATTTGATTTAATCTTAATTAAAGGTATCAGGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGCAATTTAGAATTCCAGTCAATATTGGCTGTCCACAGTTCTCAGATGTGTTAATGTGAATACTACATGCTGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTTCACCATTCCTTTCTCAAAGAGACTACTTTTAATTTTCATTTCTGGGACCTTGATTTATATAAACTATGTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCAGTTCTTTGTTATTTTTCACATCTCTGAAACTTTGAGCATTTTTTATAAGCCAGCAATTTATTTTACATAGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTGTAAAATACACTTCTAGGAAATTTTAGGAAAGATTTAACTGTTTAAATCTATTTGGCATAAACCTTGATTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTTTTTTCCATTTGACAAAAATAATACAATTCCACAGAACTAGATCAGCAGATTCTCTGATTTGTAATGTCATT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACCTGTGACATTTTAAGTCTCTCTGGTGCTAAGAATTGGCACTTTATAGCCTGGTGCCTTTACTTTTAATTTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGAGAACCTACTGCTAGTCCCAGGAAACACACTTGGAAATAAGTCAGCTATTTTTTTTGCCCAGTGATGCTATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTTGTCATATTGTCCAAAGTTCATATTGTTCAAAGCTGAGGAGCTTGTCCTGTGTATGTGAATGCACACATGTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CACTTAGTTCAAATACTAAAAGTAGCTTTTATTAAATATAATCAGCCAAAAACACACACAAAATAAAAAAAACA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATATAAGTAGTCAGTTTTTCAATGTTATCCTACTAGTTCTACATTCTATTTTAATTTTTATACAATTTCCATT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTATAGTTAAGAACCATCACTTACTTGGATTGGATGTCTTTCATTCCTAGCACTAATAGTTGGCTTTCTTTTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTGTTTACATAGAAGCAGGGTTTTTTTTTATCTTTTTTCTTTTTTTTTGTTTAAGCTATATAAAAAGGTGAGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAGCAGTTTTGTTACCTAATGAAAATTATTACACTCATAATGCTGTGTAGGCAACATTGAGATTCAAATGCCCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTGGTCAACTGGGTTCACTCATCAACTCATTCCCGTCCCAGTTTACTCACATTTCAAATTTATAAATTTCTTCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGTTATACTATTCTATTTAGATTTGCCCAGAATTAGTTGAAATAATGCTAAACCTGTCAATATTTTCCAGTAAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATTAAGCACCATACTGCATGGGAGAGACACAGTACTAAAAAGAGTTGTTAGTGCTTTATGTGAGTGATATTTCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTCGTAATGCTATAAAGAACTACAGTTAAAATAACAAAATATTTTAAAGATGTCCTAAAAGCATCTGATCCCAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAATAACTAATGGATGTCATCTAGAGCAGTGGGTGTTAATGAATAGGTATATGTCATTTAAGAATTTTTCAAAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTCTGTTTGATATCCTGCATAGAATTTGACAAAAAAAACACTTCCAAGTGTGAGCATTTTTTATTTCATTTCCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAGAGTAAGTAAGTAACTATTAGCCCAGCCATCTGCCTCGAAGTATACCTTAAGTGACCCCATAAATCCATTCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAGGCAGGTACTCTATACCATTTGGCAGCCACGGCCAAACCTACCATGGCCAGATTTCAGTGAAAATGATGAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GTAATCAAATCAAGGTATAATATGGTGTCCCTTTATGTGCTTTATGTTCCTTTAGAGCTGTTTATAAAGTTCTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TATATCTCAAGTGTTAGGATAAATCGACATACTAACTTTTCCCCCTGCAAAATTAAAAGCCTGAGGTACAAGTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TAAGAAGCTTTTAGTGCTCTACATAATATAAATTCTGGCTGGTGTTAATGCTATGAAGATAATATGTAGTTAGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAATTGAGTCGGGGAGGAATGCTCTTCATTTTAAGTGGATTTTAAAGTTTCTCCTTGAGTGGATGAAGAACTTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CCTGGTTTGCAAAAATCTTAGTTCAAAATTATATTTTCTAACAAAAACTGCATTTTGAGAAGATAAGCTAATTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TACTCAGTAGTAAGTCAAATGAGGAAGTGCAGAGGGTTTTTTTACATATATATAGCAACCTTGTCAAGTGGTCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCACAAGAGTCATAAATACTTTGTAATTAGCACAGTATATTCAGCAGTGTATAACTCTACAAATAGTACCTTAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATTAGTGTAGTATTATATCAATATCTTATGTATAATTCTTATATTAATACCTTATGCATAATTGGATTCAAACA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTGAAGGTCTATTTTAGTGTTCTTCAAAATGTGCTTCCCTGACCTACTGAAATAGAAACTTGGTGATGAAGTTC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AAGAATTTGTATTCTAATCATCTCAAACAATTCCTAAAGACACTGATTTTAAAATATCTAGTCTAGGCCCCATT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGTAATAGTTAGCACTCTAAAAGATGAAAAAGAAAATAGTCTATGTGCCAACCACTTCATTAGTACTTATGAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TTTAAAAATGAAAAAGTCTGGTACAGGAGACAAGTATATATATAAAATTATAATGCAGTGTGATAAATCCATTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TAGTATGTATAAGATACAGAAGAGGGACTTTAAACTTGAGAATTCAATAGAGATAATAAATGGGTAGGAGGGAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATAGAAAACTTTGGTGCCACAAAAGCAAAGTATGTATGGTATTGCCAATAATAGCTACCATCTATTGAGTGCTT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TACTACCTGTCAGGTACTGTATTATATAAACTCCATTTTAACTGTACCTCATTTTGCAGATACTCAGGCACAAG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GAGGTGGTTATTTGTCCAAACTGGAACCAAGATTCAAACCCAGACAGAGTCTTAAGCACATTTTTAATCACTAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CTAACTTGAGATGCCTAAATGCCAAATACTGTTGGGAGTTCAAGTGGTTCTTGATTAGCAAAATCTATTTTTAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TAGTGCAAAAGAAACACCACAGCTTATAAAGTATTATGAATTCAATAAATGGAGTCTTAACTAATGAGATATTA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTTTCTAGAATGGTGTAGCTGAGAGTATGTGTGATTCAACTGAAAGGAATAATGTTTAATCAGTGACTCTTACT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ATATACAGGAAAAGGTGCAGTTCTGTCTTTCAAATCTGCCTCCTTACCATATTGGCTTACATCCCTCATGCTGT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTTCTTGTGTTTGCTAGAAAGTTGTTGCCAAGCCAAATGTCATGGCCATGTTGAAGGCAAGGAAGAAAAAATGG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AAATGGCCTGTGCCAGCTATATATATCGCCTTTTATGAGGGAAAGCAAAGCTTTCTCAGAAATCCCAAATGGAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TTTCCCTTGACTTAATTGCCTGACCAGTTAAATGGCCACTGGTACCTGCAAAGAAAGCAGGGTACATAGCTGTC 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CCAAATAAAATCAGTATTAGCAAGAAGAAAGAATATTGAGAAAGCAATTAACAGTGTCTGTGACTGTGACATGT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CTGTGACTTTATATTGTCAAGTCCTTTCCCCTTGAATATAGTTTTGGAAGAATTAGCTGAAGGAGTGTGTTGAC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ATTGAATGGCCAAGAGAATGGGCTGTAGCAGACATCTGTCATTTCTCTTTTGGCTGCCCAGTATCCTAACTCCT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GTGTTTAAGGAATCCCTCACCTAATGAGGCAGAGCATTTCTTCCTCCTAAAGAATTTGAAAGTACCAGGTAATG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TTTTCTCAGCCTCCTTTTGCAGCTAAGGAAGAAACATCTGCCTTCAATTTTAAAATTAGTGATACAAAGAAGGA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 GGGAACCATGCAGATTCCTTTGAAGATGGTGATTAACAACACTACTGCATTCATCTCCACAGAGGTACAGCAAA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AGTGATTTAGTTAGCGATAACCTCTAATTCTATTTTTTTATTTTTATTTTTTGAGACAGTCTTGCTCTGTCAAC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 CAGGCTGGAGTGCAGTAGCACTGTCTTAACTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCT 4736
Query 1 ---------------------------------------------------------------------ATGGG 5
|||||
Sbjct 4737 CAGCCTCCCAAGTCGCTGGGATTACAAGTGCCCACCACCATGCACAGCTAATTTTTGTGTTTTTAGTAGATGGG 4810
Query 6 GTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC------- 72
||||||||||||.||.|||||||||||.|||||..||||.|||||||||||||||.|||..||||||
Sbjct 4811 GTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTTATGACTTCAGGTGATCCGCCCGCCTTGGCCTCCCAAAGTG 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 CTGGGATTATAGGCGTGAGCCACTGTGCCTGGCCTGTAACCTCTAATTCTTGTTTGCTGGCTGTCCTAGAGATC 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 CTGAGAATTACTTTTAATAAAATCATTTTTTTGCTGTTATTAAAACTAACCTGAATTGCCTAAAACCAAGAACT 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 CTGCTTGATAAAATAAGCATAGTTTTAGGAACAGCCATGCAGATATAAATTTTATCAACACTTTATACATAATT 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 TGGGACTTATATTTAAATGTAATATTTGATGCTTATAAAAGGGTAAATGGGGAATGCAAATAAATTATCAAGCA 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 TAATAACTCATCACCTAACTTAAGAATAACATTATGAGTGCTTGTATTTTATCTATTTGAGCTCTTCTCCTATC 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 TTTGCCGACCCCCCCGCTCTCTTTTTAATAGATTTGTTCGAATGTAGAAAGACCTAAAATACATATGTATCCCT 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 AAAGTGACTTATTTTATAGTTTTCTTTCTTTTTGAACTTCAAAAAAATTGTATCATACTCTATGTAGTCTAAGG 5402
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5403 ATTTGGTTTTTTTCACTCAACATGTCTCTAGAATTCACAAGTTTTATTGTTTTATAGCTGTCATTTTCATTGAT 5476
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5477 GTATATTTCATTGTTGGGTTATACAACATATTGTTAAGGAATACATACATATATAATAAATTATACATTTTTTA 5550
Query 73 ------ 72
Sbjct 5551 AAAAAA 5556
