Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10261
Subject:
NR_103741.1
Aligned Length:
5511
Identities:
63
Gaps:
5439

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCATTTGGTGGGGCCTTTGTATCTCACTCCCGCCACAGCTTGGGATCGGTCTCTGCTGTTTTACGTCCTCCAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCAGGACATCCTGGAAGCTGGGAAAAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCATTATCCCAAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTCGGCTTACTACAACCTCCGCCTCCCAGGTTCTGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAAGGTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GATGATGTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TAGGTAGGATTGTGACATATATCTGGCCAAGCGTACAGATGTAATGATGACTGTCATACCTTGAAGAAGCCAAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCAGAGAGAATGTTGCTCTCAGGCTTAGGAAAATGAGGAAGTCTTTCTGTACAAAAGTCATAAAGAATTACTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTCTCTCACATATATTACGCCCTAGTGTGTTACAGAGAATGTCATAACAGGGCCCAGCACACAAGTGAGATTGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTTTGTCCTATGCACACTACACCAACCTTTACAGTTGTCACCCTGACCCATTGACAGAGTCTGCTAGTGAGGTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTGAATTACATGTGAACACAGTCCGCAGTTGGAATTGTGACTGTCATATGTGAACATCTGGCTACAGTTGGGAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGTGACTCATTTCTAAATCCAGCTCATAGGAAGGTGAAGACTCTCCTATCTGGACTCAGTTGGTGAGAGAGATG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTGACTCTCATATCTGGGCTTAGAACCACAGGAAAGATTCTGGAGCTCCTTGTGCAAAGGTCATAGAGGATTAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAATCTTGCATATTGTATAAAGTCCTCAGGTGACACAGAGTGTCTCTCGAATGCACACCCAGGCAACAGTAAAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATTGTCATTCTCCCACATAAACACATCCCACTGTTGAAGTTCTGAATTTCACAGAGGCTGTCAAAAGTTGGATA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATTGCCTCTCATGTGTGGATCTGGTCCACAGGTGGGTTAGTGACTTCCAGACCAAGGTTCAGCGCACATGTAAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCTGTGACTACACTAAGAAGATACAGTCTGCAGAAGAAACTGTGGCTCTTTTGCACACATTCTGTCAATCATTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGATTGCGACTCATGTACTTAGACCCAACATACAGGAGGTGTTGACTTTCATACCTTTAGAACCTGGACATGTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGGAATTTCTAATCTAATCCCTGGACTTTCCTGCAGGTGTGATTGTGTGCATTGCAAAGCACCTTAGTGATTTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTCTCCTGCCTTGGCCAAGCACACAAATGAGATTGTGACATATGGCTTGACTCTGAACCTCCAAGATGTGACT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CTTTTTTCCAGCCTTGGAGCTGCCCACATGTTGCATTGTGACATATTCCTAAGCCCTGCACTCAGGTTATGTGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTCTCCTTTTTTGCTTAGGCCCTGAATATTTTTCATGTTAAGACATATTACTAGGTCCAACACCTATAAAATGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GAGACTACCACCTGGGCTCTTTCTACAGAGGGCCTTGTGACATACCTCTGCATCAATAACCTAGGAGATGTGAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GCTCCATTTTTGCCTGTACGTGCCCCACAGAAAAAATTGTGGCTGGCCCAGGTACCAGGTGATGTGTCTCTGCT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GCCTGGGCCTGGACCACAGAGAGCATTGTTACTGATTGCTGGGCTCAGCACCCAGGTGATGTGACTCTGCTGCC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TGTGTGCTGCTTTCAGGAGAAGGTTGTAACTTATTCCTGGCTGAGTATGCAGTCACACTCCTGACTGATCTCTG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCCTCAGAAAAGGTTGTGTCAAGCCGGGCCCGGTGGCTCATGCCAGTAATCCCCAGCACTTAGGGAGACCGAGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGGGTGGATCGCCTGAGGAGTTTGAGACCAGATGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTAATCGGGTGTGGTGGCGGGCACCTGTAAACTCAGCTATTCGGGAGCCTGAGGCAGGAGAATTGCTTGAACC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CGGGAGGTGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAGCAGAGCAAGATTCCATC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTGGGAAAAAAATTACAAAAATTAGCCAGGCGTGGTGGTATGCACCTGTAGTCCCAGCTACTTGAGAGGCTGAG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GCACAGCAGTCACTTGAACTTAGGAGGCGGAGGTTGCAGTGAGCCAAGACTGTGCCATTGCACTCCAGCCTGGG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAGGTTGTGTCATATTCCTGGCTAAAAACC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CAGATGATGTGACTCTCCTCTCTCCCTATTCATAGGCAGGATTGTAAAATATATCTTTTTTTTTTTGAGACAGT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTCATTTTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCTTCCTGGGTTCAAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CAATTCTCTTGCCTCAGCCTCCTTAGTAGCTAGCCACCACACCTGGCTAATTTTTGTATTTCTATTAGAGATAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GGTTTCCCAATGTTGGTGAGGCTGATCTCAAACTCTTGACCTCAGGTGATGCACCTGCCTCAGCCTCCCAAAGT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GCTGGGATTACAGGTGTGAGTGACTGCGCCTGGCCTGTAAAATATATCTTGACCTAGATCACAGATGCAATGAT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TACTCTCATACCTCACAGTATTTAATAGGAGAGATGCTCTCTCTTGCTCTCGCTCTCTTTTTTCTTTTTTTTTT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TTTTTGAGACAGTTTTGTTCTTGTTACCCAGGCTGCAGTGCAATGGCGTGATCTCTGCCCACCACAACCTCTGC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCACGTAGCTGAGATTACAGGCATGTGCCACCACGCCCA  3034

Query    1  ------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGG  50
                                    ||||||||||||.||||.|||.||||||||||.|||||||..||||||||
Sbjct 3035  GCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCTATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGG  3108

Query   51  TGATCCGCCCACCTCAGCCTCC----------------------------------------------------  72
            |||||.|||||||||.||||.|                                                    
Sbjct 3109  TGATCTGCCCACCTCGGCCTTCCAAAGTGCTGGGGTTACAGGCATGAACCACTGTGCCCAGCCCAAGATGCTGT  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  CTCTTAACAGCTAGGCCTAGAGTCATGAATATGATTCTGGGTCTCCTTGTACAAAGGTCATGAAGAATTGCCAC  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  TTTCTTGCATACTGTATAAATCTCTTGTGGTACAGAGAGTGTCATTACAGGGTTCAGCATACAGATGAGATTGT  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  TTCTCATATACACTCCCCACCAACTGTTAGAATTGTCACCCTCACACATGGACAGAGCCCACTGGTGAGGCCCT  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  GAATCTCACACACACACACAGTCTACAGTTAAAATTGTGACTGTCATATGTGAACATCTGGCTAGAGTTGAAAT  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  AATGACTTATTTCTAAATCCAGTTCATAGGTGAGAATTCTACCTGTCTAAGCCTAGGTAGGATAGTCAACATGT  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  CCCTAATTGGCTGGGGGACATGTTGACTCTCCTACCTGGGCTTAGGGCCAAACAGTTCATGGAAGGGATGAAGG  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  CTCTCAGCTCTCATGCACAGATCCAGTTGGTGAGATTGTCACTAGCATACTTAGACCCAACATACTCTGATACC  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  TAGAACTGGGACATGTGCAGGATTTTTAATTACTGGACCTTCCTGCAGGTGTGATTGTGACATATGTCTTTGTT  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  ACACACCTGAGTGGTTTGATGTTCCTGCCTTGGTTCAACCCAAAGTGAAGATTGTGATGTGTCACTGGACCCAG  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CATCTCAGTGATGTGACTCTTCTTTTTGGACACCACAAATTTTGGGTATTGTCAAATATTGCTGGATCCTGTAC  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  CCATGTTATGTGACTCTCCAACCTATGTCCTGCATGTTGTGCCATATTGCAGCACAATGTGTCACATTAGACAT  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  CATTACATATTGCTGGGCTCAACACCCAAGTGATGTAACATTTTCCTGGGCCTTGACTACAGGGGGCTTTGTGA  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CATAACTGAATGCCCATAACCATGGTAATGTTACTCTTCTCCTGCCTGGTCTCTGCTCACAGGGAAATTGTGAC  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  ATACCATTGGCCTAGCATCTTGGTGATGTGACTCTCCTCTTTTTCTCAGGCCCCACATATTTGGGTATTGTGAC  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  ATACCCAAATGTGACACTGGGCTCAACACCTAAGGGACGGGAGTTCTCTACCTGGCCCCTTCCTGAAGGGGGCA  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  TTGTGACATACTTCTGCACAGGTATGTCACAGTTATTACCTAGGAGATGTGACTCTCCTCTTTTGCCAGCACCC  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  TGCTTACAGGGAAAATTGTGGCACATTTCTGTGGCCAGCAACCAGGTGATGTGTTTCTCCTGCTTGGGTCTTTA  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  TTACAGAAAAGATGGTTGACATATCACTAGGCCCAGCATCTAGGCGATGTGACTGTCTTCTTCTGCCTGGTCCC  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  TGCTTACAGGAACATTGTAGCATATTGCTATGCCCAGCACTTTTCTCTTCTTTTAGGTTTTGCCTGCAGGAGAC  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  TTTGTGACATTGCTGGGCCCTGCACTGACATTATCTGACTCTTCTGTCTCTGCCTACTTGGGCCATTGTGACAT  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  ATTGCTGGGTCCAACATCCAGGTGATGTAACTTTTATGCCTGGGTCCTGGCACCAGAGGACATTGTCTTTGCAC  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  CACTCACACAGGTGATGTGATTTTCTTCTGTTACCTGGTCTCTGCTCACAGGAAGAATTGTGACCTTGGCCAGG  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  CTCGGTGGCTCACACCTGTAATCATAGCACTTTGGGAGGCCGAGGCGAGTGGATACCTGAGGTCAGGAGTTCGA  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  GACCAGCCTGGCCAACATGGTGAAACCCCCATCTTACTTAAAACACAAAAATTAGCTGGGCGTGGTGGCAGGCG  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  CCTGTAGTTCCAGCCACCCACGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGTAGGCGGAGATTGCAGTGAGC  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  CGAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGGGAGACTCCATCTCAAAGAAAAAAAAAGTGACCTTTTG  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  CAGCACATAGCTGATTTGACTGCTTTGTGGAGTACACCAAGCAGGTTGTCAAACTGGTGGTCCCTTTACTGAAA  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  TTTTATTTCCACAATGGTGTTGGAGGGGCAGCAGCAGAATCCGTGCCTTTTCTTCTGGAGTGTGTGAGAGTCCG  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  TGGTCCTGAGTATCTCACACAGATGTGGCAATTTATGTGATGTTCTGATTAAGACCATTGGTACAGAAACAGAT  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  TCAGATGTCCTCAGAAATAATGCATTGTTTAGCAAAGTGCATTGAAGTTATGGGAGATGGATGCCTTAATAATG  5402

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5403  AACACTTTGAAGAACACCTTTGCCACATGTCCTCAGGACCTTCTGAGGGCTGTGTCATGGGGCATGGTCACTCA  5476

Query   73  -----------------------------------  72
                                               
Sbjct 5477  TATTTGACTCAATAAATTTCTTCAAATATTTTAAA  5511

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