Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- NR_109898.2
- Aligned Length:
- 6264
- Identities:
- 63
- Gaps:
- 6192
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCTTTCCCCTCCCCAGGCCCAGGCGAGCGCTGGTGTGGACGGGAAGCTCCCGGCCCGGCGAACTAACTGGAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACGGAGCTGCAGCCGGTTGGGCCGGTGTACTTTCCCGCTCTGGAAAGGAAGAGAAATGGAAGTGAGAAAGTTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCATTTCCTGGCAGTTCTTGATAGTTCTGGTTCTGATCCTGCAAATTCTGTCTGCGTTGGATTTTGACCCATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAGTCCTAGGGGTCAGCCGAACAGCCAGTCAGGCTGATATTAAAAAGGCTTATAAGAAGCTCGCCCGGGAATG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCATCCTGACAAAAACAAAGATCCTGGAGCAGAAGACAAGTTCATTCAAATCAGTAAGGCTTACGAGATTCTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAAATGAAGAAAAGAGATCAAATTATGATCAATATGGAGACGCTGGAGAGAACCAGGGCTACCAGAAGCAGCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGCAGCGAGAGTATCGCTTCCGCCATTTCCATGAAAATTTTTATTTTGATGAATCCTTTTTTCACTTCCCTTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TAATTCTGAACGGCGGGACTCAATTGACGAAAAGTATTTATTGCACTTTTCACATTATGTGAATGAAGTGGTTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGATAGCTTCAAGAAACCCTACCTCATCAAGATCACCTCCGATTGGTGCTTTAGCTGCATTCATATCGAGCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTGTGGAAAGAAGTCATTCAAGAACTGGAAGAATTGGGTGTAGGAATTGGCGTGGTCCATGCTGGGTATGAGAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACGCCTGGCCCATCACCTAGGGGCACACAGCACGCCCTCTATCCTAGGAATCATTAACGGGAAAATCTCCTTCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCCACAATGCAGTTGTCCGTGAAAATCTGCGACAATTTGTAGAAAGTCTTCTTCCAGGGAACTTGGTGGAGAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTACAAATAAAAATTACGTCAGATTCCTCTCTGGCTGGCAGCAAGAGAATAAGCCTCATGTCCTTCTGTTTGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCAAACGCCCATTGTGCCACTGTTATACAAGTTGACTGCCTTTGCATACAAAGATTATTTATCATTTGGATATG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TATATGTGGGTTTGAGAGGGACGGAAGAGATGACAAGGCGGTACAACATCAATATCTACGCCCCTACCCTCTTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTCTTTAAAGAACATATAAACAGGCCTGCCGATGTTATCCAGGCCCGAGGTATGAAGAAGCAAATCATTGACGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTCATCACCCGAAACAAATATCTATTGGCAGCCAGGCTCACCAGCCAGAAGTTGTTCCATGAACTCTGCCCTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGAAACGGTCGCATCGACAGAGGAAGTACTGTGTGGTTTTATTGACTGCTGAGACTACCAAGTTGAGCAAACCC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTGAGGCTTTCCTGTCCTTTGCCCTGGCAAACACTCAAGACACAGTGAGATTTGTGCATGTCTACAGCAATCG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCAGCAGGAGTTTGCCGACACCTTACTACCAGACAGTGAGGCGTTTCAAGGGAAATCAGCGGTGTCTATTTTAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAAGGCGCAACACAGCAGGAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGGATTGGGAGTGAGAGTGACAAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTATCCTCTTGGGCTATCTCGACCAGCTGCGTAAAGATCCAGCTCTTCTGTCCTCTGAAGCAGTGCTTCCTGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCTGACCGATGAACTTGCCCCTGTTTTTCTCCTTCGATGGTTCTACTCTGCTTCTGACTACATCTCAGACTGCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGGATAGCATTTTTCACAACAACTGGAGGGAAATGATGCCCCTGCTGTCCCTGATCTTCTCTGCCCTCTTCATC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTCTTCGGCACTGTCATCGTTCAGGCTTTCAGCGACTCTAATGATGAGCGAGAGTCAAGCCCTCCAGAAAAAGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGAAGCCCAAGAGAAGACTGGGAAAACTGAGCCAAGCTTCACCAAAGAAAACAGCAGGTTTCTCTAACAAAACA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCAGACTCACCTCCCCGGCACCTGCCCCCCAGATCCTGTCATCTGATAACGCAGCATTGGAACATAGAGTGTAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGAAGAACTCTCATGCACCTCCTCCCATGTAAACTGTGGCTACAGGGAAAAGTCACTGTGATTTGTGTTTACTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGACCCTGTAGGTGTTTAGATGCCTTAGATTTCATAATGAAGGCAGAAGGAAAGAAGCCTATCAGCAAGATTCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAAAAAAGGCTTTGTGGAGGTAACTGAACTCACAGATGTAACATACACCAGTAACTTGGTACGTCTGAGGCCAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCCACATGAATGTGGTCCTCATCCTGTCGAATTCTACCAAGACCAGCCTACTACAGAAATTTGCTTTGGAGGTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TACACATTTACTGGGAGCAGCTGCCTACACTTCTCCTTCCTGAGTCTAGATAAACACAGAGAATGGCTAGAATA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTTACTAGAATTTGCTCAAGATGCAGCTCCAATCCCAAACCAATATGATAAGCATTTCATGGAGCGTGACTACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTGGTTATGTACTGGCTCTGAATGGCCACAAGAAATACTTCTGCCTCTTCAAGCCCCAAAAGACAGTCGAAGAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GAGGAAGCCATAGGGTCGTGCAGTGATGTTGACTCTTCCCTCTACCTGGGTGAATCTCGAGGGAAACCTTCCTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGGCCTTGGATCCAGGCCCATCAAAGGAAAGTTGAGCAAGCTCTCTTTATGGATGGAACGCCTGCTGGAGGGCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CCTTACAGAGGTTTTATATCCCATCATGGCCTGAACTAGACTGAGAGGATTTTCCAAAGAGATTTGAACTCTTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGACTTTTTAACATGCCCCTGTGAACAGGTATTTTCAGGACTCAAACTACCACAATGAACAGAGTATAGATTTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGATTGCTCTTCTAGAACCATGGCTAGAAGAATCTTTCCTTTGTCCTGTTCTAACCTAGGAATGAAAAACACCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCAGTTTGAATCGCCTAGATGAAAATCTTTTCCTCTGGGTGTTATTTTTCCCCACTGAATGCCACACCATTGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATAGACTGCTCATCCCCTCTTCCTTTCTTGTCCTTGTCCCATGCTCACCCCACCCTCCTGTCCTGTGTCTTGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGAAGCACAGGGCTCCACCCTGCAAGCGGCATCTGGCGGACCCTCATGAGCCTGTCGTGCAGGCCAGGTCATTG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GCCCCTTCCCCAATCCCGGCCCTGCTGTGCTGCTGCCATGGCGCATGCTCCTAACTCTGAACAACCCACGGCAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTTCTAGCCCCGCATCTGGAAAAAGGCCCCTTTCCAAGCAATCTCACGTTTACTGGTTGTTCTGGGAGTAAGTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCTAAATGTATATTTTGGGGGTATCCCCCAACAACAGTTTGTTGGCCACAGGTTGAAAAGGAAAGGAATAAACG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGAGTTCTGCATGTGAGTTCTCAAGAAAAGGAAAGGGAGGCTGAGCAGTGGCTGAAGCGATGCAGCCTTGAGAC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ACGCTGTGAGCATCCCATCCGCCGCCCCAGCGCTGCTGGTAGCCAGGGGAGGGGTCTGCACAGCGAGAAGTACT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GTGATGACTTTGAGCCGTTGACATGTATGTCTTCAGATGCCTTTCTGCCTCTGTCGATTTTAGGGTATGGATAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TAGGAGCCATAACTTGTAATCTTGTTCTCTGAACGTAGAGATAAGCTGCTATAAAGCCAGTAGATGTTAAACTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AAGAGAAATTATTCCCACCTGCTATGAGTCAGGCTTAAGGAATCTCTTCAATAGTGTCTCTTTAGTAAAATACC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAACATGTCTTTGTATCAAGGAACTTAAAATTTCTCAACAATTGTATTTTGAACACTGTTACCCTAAAAGTGCT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GTCTCTTCAAGTCATCTTTTGCAGGAAGTGAGCCAAGATTTGTTCTAGACTCCCATTTTGCAAAAGGCTTACTT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TCCACTTCTGGGCTGTATTTTGATGTCTCATCTTCATTGTTTTCACTCTTAACTTAGAGCTGCTTCACCAGTAT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TGGGGTCAGACTGGCCATCAGCACCTGAGCGTGCTGAGCTCCAGGTATAGTGGACCCCAGGGTGCCTCATACCA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GCCAGTTAGAGAGCATACCTTTTATTTTTCAGGGCAGAATGACCAGTGGTTCTGAGTTTGAGTTTGGACAGCTT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CAAAGAGTGGTCCGTTCAAATGTCAAAGCAAGGTGCCTTTGGTGGCTTTGTGAAGGGTGAAAATCAGTGATGGG 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 ACATTTACTAAGTATTTCTTTTTTTTTTTTTTTTTTTAGTTGTTGAGACAGAGTTTCACTCTTGTTGCCCAGGC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TGGAGTGAAATGGTGCGATCTCGGTTCACCGCAACCTCCACATCCCAGGTTCAAGTGATTCTCCTGCCTCAGCC 4292
Query 1 ------------------------------------------------------------------------AT 2
|.
Sbjct 4293 TCCTGAGTAGCTAGGATTACAGGCATGTGCCACCATGTAATTAGCCCGGCTAATTTTGTATTTTTAGTAGAGAC 4366
Query 3 GGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC---- 72
|||.|||||||||||.|.|||||||||||..||||||||||||||||||||||.|||..|||||||||||
Sbjct 4367 GGGATTTCTCCATGTTGATCAGGCTGGTCATGAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCAAA 4440
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4441 GTGCTGCTGGGATTACAGGCGTGAGCCACCACTCCCGGCTAAGTTAGTATTTCTTTAATCTTAATGCTTTAAAC 4514
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4515 TAAGCCACTTGGATCCTGAATAATTTAAATCTTGAGCTACATTGGTAAGTAATAAATTATTTAAGGCCAGGAAT 4588
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4589 TCCTGTAGTTTTCATGGAGTCTGTAGCTTTATTAAAAAATAAATCACTGCCAGGCTTCATTCTTCCATATGATC 4662
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4663 CTCTAAAAATGGACACTTCCTCTGAATGCTGTATCTCATGGCACCTGGTCCAACTAGAAATGGTCAAGGAATTC 4736
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4737 ATTTGGCTCCTTGATACATCAGTCCTCAATATTACTTTCTAGGTATTTTATGGCCAGATTGCTTATATGAGTGG 4810
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4811 TCTTTTGGTTTGGTAGTAGGTTTTTATTTTTAATTTCTGTACTAATGAAATTCCTGACTTTAATTTCTGAAAAC 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 CAAAAACTCTCCAAGTGTATTTATTTATATTTTTTTTAATAGAGACGAGGTCTTGCTATGTTGCCCAGGCTGGT 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 CCCAAACTCCTGGCCTCAAGCAGTCCTTCCACCTTGGCCTCCCAAAGTGCTGGGATTATCAATATGAGCCACCA 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 TGCCAGATTTGTTCATTTTTAAACATTTTTATCTCTTCAAGTCATCTTTTGATCTTTTAAAAAGCACCTTCAAA 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 CAGCTGCACCTTCCATTTGCACTAGGAAATGAAGGTAGTGATGGGATTGGCAATGTTCCTGGCAGATGTTTCAG 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 CCCAAAAGCTCTTCTACAGACCGGTTTAGAGCTGGTGCCCTATGAGAATATTAGGGAGCTTTTATTTTAAATTG 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 AACTTTACCCTTGTCCATGCAAGGCATTCCTCCTGAATGCATCCATGAATTTGTTTACTTTTGCGTCAAACATA 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 TGAGCCATTGTCATGCTCAGCCTGTGCCACCATTGCTCTGTCTGATGTATGTAATCATACAAGACCTGATTTTG 5402
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5403 GTTCTAACACAGTGGTCTTTGACTATCAACATTGATGTTTTTAGAGATGGGTTCTTCTGGTTGATACAGACTAT 5476
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5477 GCATTGCGTTTAGCAGATGGGGTAAAACTGGCCTAAAACAAGTCTTTGCAGAATACATGCCAATTTCCAAAAAA 5550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5551 AAAAAAAAATTTGTTGCTCAGGTGTTGCACAATTTTTATCTAACACTGAGGCTATCAGCTCCAACTAAACAACA 5624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5625 TTTCAGTGGGTGAGGCTGCCCTAACTTCCATTAGGGGCCATGGTCTCACTGCCATCACTTATTAGCCATGAGAA 5698
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5699 TTTGGTTGTAGTTTTCAGGTAGGTTGGTTTCTTCCTCATTTGCAGCTTGTTGATACTTGTTCCTTTTTATTTAT 5772
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5773 TAACATCCCAATCAATTTGCAGCTGCCATCATTACATAAATATTTTTCTGTTATAAAAAGAAGTGTGATCTGTT 5846
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5847 TTTTTAGTGATTTCCTTTGTTTGGGAATAGAGATTGGAAGCACATACTCAGACCTGTTTTGTTAACTAGAATTC 5920
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5921 TTTAAAAGCTGATGCCAAACATCTTTACAGAGGAACTGTAGTTCACATCCACCTGTCTGACATTGTCCCCTAAA 5994
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5995 AACAAGTGCAGTGTGGCAGCTGCTGAATCTGTCTGTTCAGTTTGTCAAGGAGGATAATTATGCTTGGGAGAGAT 6068
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6069 CTGAAAAGAAGGTGAATATTTTGCACTTTTGATACTCTTAGGAACAAATAACTTATTTGGCAAATTGTTTCTTT 6142
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6143 TTTATGTTTTGGGTGTTGTTTTTGTTTTTTGACTTTTTTTGTATTGTGAACAGGCACTGAAGCTGATGTTATTT 6216
Query 73 ------------------------------------------------ 72
Sbjct 6217 TAAGATTACAGAATGGAAAAAGAAATAAACTATTTTAATGTCTGATAA 6264
