Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10261
Subject:
NR_110280.3
Aligned Length:
5116
Identities:
65
Gaps:
5044

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTCCTGGGCCTAGCAAGAAGGATTACATGGAGACAGTGATGTCGAGGAGGGTTGGCTTGGTCGTTATGAAATGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGAATGCCCCCCAGCTCCATCGAGCCCCCTTTTGACAGCAGCCCCGTAAGGAGACTGGGCACTGGGCATTTTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCACTGGGGCTTCTCTTCCAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGTTCAAACATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAAAAGCTCTGGAGGCCCGGACTCCCCGGACACAGAGCCCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTCCTCAGCTGGTCAGTAGCAGGGCCCTCAGCTGGAGGGGATTACAGGGGAATCTGTGCTGCGGATGCTGTTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CGGGTCCAGCCCTCTGCCCTGGGCTTGGAGTCAAGGTCTAGGGAGGCCACGGGAAGGCACCGACACCCACCAAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTCTGGGAGGTCGCTAATGCTCACAGAGACCATAGCAGCAATGGACCCACGCAGAGGCCGTCGGACAACAGTCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTATATTCTCATCGGGGTCTCAGTGGTCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACACTGACCCCATACCCACCTGGCCTCTGCACC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGCCATTTGGAAGGCTTCCTGTTGGATTCCTCTTCATC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCTGGAGACTGGAGGTTTCTAACCAGCATCCAGAAGGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCCTTGGACAGACTGTTTCTCAGTTATTTCCAGAGACC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTTATTCACCTGACTGTTTCCAGAGACCCAGCTAAAGT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGCCGATTTCCTGAGCAGTGATGCCACCTCCAAGCTTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGACTTTGCTGTAATTATCTGCCCTGCTGACCCTAAAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCTATACACACACAGCTGAGAGCCAAGCCCAGTTCTCT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGAAGGCCTCACATCTGGCAGCCCCAGGCCTGGTCCTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAGTTGTTCAAAGCTGAGTGAGGGAAACAGGACTTACG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATCAGGATTGTACGTATTCAAGGTGTAAAATGTGATAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTTGTCGTACACGTACATTGTGCAATGACAGTCACAATCAATTCCTCAGCGCACCCATCGCCACAGATACGATA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACATTGGTGTCAGTGTTTTCTGACAAATCACGTGTATC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAGAGCCGACCCTACAGGTCCACATCTGCACATACATG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CACAGGAATGCATGCTCTCACACACATGCATACACACACGCACACACACAGACATGCACATACACTCACACGCC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTGAGGCATTTCTGAGTATCCACCCTACCTGTAGGGTC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGATGTACTGATTGACACAGAAAATTACCCTATGTACCACTAGGAGGCGGCAGAATCTCATTTGGGTTAATCTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGGAGGAGAATG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGTGGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTTTTAAGAATTCAGCAAAAACTCAGCCAGCTCTTTCT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGACACATTAAATTCTCCTACAAACCCTCCACAGCGTGC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGACCGAGACATGAAGTAACCTGTCCAAGGTCGGCCAA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCTGACTCCACATTATGAACCCCGGGATGGGCTGCAGC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGGTGGTACCTGACTGGCCTACCCAATTTTAATTTGTA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTCCTCCTGGGATCTGCTTCCCAGTGCTGTACTCTGTA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCCTGTTCTTCACGTGGGACACATTCTCCCTGCTCTGT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTCACTGTGTGTCTCTCTGTCTCTCTCTCTCTTTTTTT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGATTACAGGCATGCACCACCAC  3478

Query    1  ------------------AT--------------GGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTG  42
                              ||              ||||..|||||||||.|.||||||||||||.|||||||.|
Sbjct 3479  ACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGGCTCTCCATGTTGCTCAGGCTGGTCTTGAACTCCCG  3552

Query   43  ACCTCAGGTGATCCGCCCACCTCAGCCTCC--------------------------------------------  72
            |||||||||||||.||||||||||||||||                                            
Sbjct 3553  ACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCACTGCGTCCAGCCGTC  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  TTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCTGGTTGTTTTTCAACCATCAGCTGGGTGTTTTCTCCCAT  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  AACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTGGGTACATGAACTCTATAGCAGAAGGTGGACAGTCTGCA  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  CATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGCAGAGCACAGGAGAGCTGAGCAGATGCCAGTGTCTGCTC  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGGTCACAGTGGAAAGCAGGACAGATAGAGTTTAGGGGAAA  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  TTAAGCAAAAATACCACACTGTTATTTCTTGACATATTAGTGGAAAGAGGAAGGGCCCAGAGAGAAGACAGAAA  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  ATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGCCAACCCGCCCAACGCAGGGGCCAGAACTCAGGGTGGTG  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  AGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCCTCCTGCTGCACGGGCCCCCAAGCACCACCTGGGGGAAG  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  AGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCCAGGCAGAGAGGGAGGGCCTACCCTGTGCTTATGATCCC  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  ACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAACACCAGGAGGCTGCAGTGGGGCCCAACGTGAAAGGGAGG  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  AGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGATATTCACAGATGTCCCTGTGAGTAACCAGGGCAGAGGC  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  CAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGCCAGCTGGGCAAGGCGTTGAGAGAAAGATTACCCGGTGA  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  CCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAGAACCATCACTGTAGGTACCAGGACCCCAGCGGTGGGAT  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  TTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGAATACAGCATGAACAAGTGAGAATGTTTGTTATACAAAC  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  TATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTTTTTTTACCTTTTAGTGTAAAACTGAACATAGAAAATAA  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  ATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAGGGCTGCCCAACACCTCGTCTACCTTCTCTGTCATAGCC  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  CCATTTAAAACACTCTCTCTGGATGAATACACCAAACCTCACAGTCTTTGCTCTCTTGCTAGGAAGAGGAGCAA  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  GAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCTGCTGTCCAATGGAAACTACTACTTAAGACATTTAAAAA  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  TAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTGATGCCAGTTAGTCTCTGAAAACTTTCTGTGATGAGTGT  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  AAAATTCTACACCTTAATCTCCTTTCTTGTAGGATCTGGGAAGCAGTATGCACTTGATTGCACCAAAGATTTTA  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  CGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAAGTAAACTATATCTTCCATTTAGACAAATAAAATATCTT  5106

Query   73  ----------  72
                      
Sbjct 5107  TTTGATAAAA  5116

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