Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- NR_110280.3
- Aligned Length:
- 5116
- Identities:
- 65
- Gaps:
- 5044
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCTGGGCCTAGCAAGAAGGATTACATGGAGACAGTGATGTCGAGGAGGGTTGGCTTGGTCGTTATGAAATGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGAATGCCCCCCAGCTCCATCGAGCCCCCTTTTGACAGCAGCCCCGTAAGGAGACTGGGCACTGGGCATTTTTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCACTGGGGCTTCTCTTCCAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTTCAAACATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAAAAGCTCTGGAGGCCCGGACTCCCCGGACACAGAGCCCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTCCTCAGCTGGTCAGTAGCAGGGCCCTCAGCTGGAGGGGATTACAGGGGAATCTGTGCTGCGGATGCTGTTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CGGGTCCAGCCCTCTGCCCTGGGCTTGGAGTCAAGGTCTAGGGAGGCCACGGGAAGGCACCGACACCCACCAAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTCTGGGAGGTCGCTAATGCTCACAGAGACCATAGCAGCAATGGACCCACGCAGAGGCCGTCGGACAACAGTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTATATTCTCATCGGGGTCTCAGTGGTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACACTGACCCCATACCCACCTGGCCTCTGCACC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGCCATTTGGAAGGCTTCCTGTTGGATTCCTCTTCATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCTGGAGACTGGAGGTTTCTAACCAGCATCCAGAAGGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCCTTGGACAGACTGTTTCTCAGTTATTTCCAGAGACC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTTATTCACCTGACTGTTTCCAGAGACCCAGCTAAAGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGCCGATTTCCTGAGCAGTGATGCCACCTCCAAGCTTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGACTTTGCTGTAATTATCTGCCCTGCTGACCCTAAAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCTATACACACACAGCTGAGAGCCAAGCCCAGTTCTCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGAAGGCCTCACATCTGGCAGCCCCAGGCCTGGTCCTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAGTTGTTCAAAGCTGAGTGAGGGAAACAGGACTTACG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATCAGGATTGTACGTATTCAAGGTGTAAAATGTGATAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTGTCGTACACGTACATTGTGCAATGACAGTCACAATCAATTCCTCAGCGCACCCATCGCCACAGATACGATA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACATTGGTGTCAGTGTTTTCTGACAAATCACGTGTATC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAGAGCCGACCCTACAGGTCCACATCTGCACATACATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CACAGGAATGCATGCTCTCACACACATGCATACACACACGCACACACACAGACATGCACATACACTCACACGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTGAGGCATTTCTGAGTATCCACCCTACCTGTAGGGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGATGTACTGATTGACACAGAAAATTACCCTATGTACCACTAGGAGGCGGCAGAATCTCATTTGGGTTAATCTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGGAGGAGAATG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGTGGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTTTTAAGAATTCAGCAAAAACTCAGCCAGCTCTTTCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGACACATTAAATTCTCCTACAAACCCTCCACAGCGTGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGACCGAGACATGAAGTAACCTGTCCAAGGTCGGCCAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCTGACTCCACATTATGAACCCCGGGATGGGCTGCAGC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGGTGGTACCTGACTGGCCTACCCAATTTTAATTTGTA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTCCTCCTGGGATCTGCTTCCCAGTGCTGTACTCTGTA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCCTGTTCTTCACGTGGGACACATTCTCCCTGCTCTGT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTCACTGTGTGTCTCTCTGTCTCTCTCTCTCTTTTTTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGATTACAGGCATGCACCACCAC 3478
Query 1 ------------------AT--------------GGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTG 42
|| ||||..|||||||||.|.||||||||||||.|||||||.|
Sbjct 3479 ACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGGCTCTCCATGTTGCTCAGGCTGGTCTTGAACTCCCG 3552
Query 43 ACCTCAGGTGATCCGCCCACCTCAGCCTCC-------------------------------------------- 72
|||||||||||||.||||||||||||||||
Sbjct 3553 ACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCACTGCGTCCAGCCGTC 3626
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3627 TTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCTGGTTGTTTTTCAACCATCAGCTGGGTGTTTTCTCCCAT 3700
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3701 AACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTGGGTACATGAACTCTATAGCAGAAGGTGGACAGTCTGCA 3774
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3775 CATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGCAGAGCACAGGAGAGCTGAGCAGATGCCAGTGTCTGCTC 3848
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3849 CAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGGTCACAGTGGAAAGCAGGACAGATAGAGTTTAGGGGAAA 3922
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3923 TTAAGCAAAAATACCACACTGTTATTTCTTGACATATTAGTGGAAAGAGGAAGGGCCCAGAGAGAAGACAGAAA 3996
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3997 ATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGCCAACCCGCCCAACGCAGGGGCCAGAACTCAGGGTGGTG 4070
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4071 AGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCCTCCTGCTGCACGGGCCCCCAAGCACCACCTGGGGGAAG 4144
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4145 AGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCCAGGCAGAGAGGGAGGGCCTACCCTGTGCTTATGATCCC 4218
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4219 ACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAACACCAGGAGGCTGCAGTGGGGCCCAACGTGAAAGGGAGG 4292
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4293 AGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGATATTCACAGATGTCCCTGTGAGTAACCAGGGCAGAGGC 4366
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4367 CAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGCCAGCTGGGCAAGGCGTTGAGAGAAAGATTACCCGGTGA 4440
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4441 CCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAGAACCATCACTGTAGGTACCAGGACCCCAGCGGTGGGAT 4514
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4515 TTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGAATACAGCATGAACAAGTGAGAATGTTTGTTATACAAAC 4588
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4589 TATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTTTTTTTACCTTTTAGTGTAAAACTGAACATAGAAAATAA 4662
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4663 ATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAGGGCTGCCCAACACCTCGTCTACCTTCTCTGTCATAGCC 4736
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4737 CCATTTAAAACACTCTCTCTGGATGAATACACCAAACCTCACAGTCTTTGCTCTCTTGCTAGGAAGAGGAGCAA 4810
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4811 GAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCTGCTGTCCAATGGAAACTACTACTTAAGACATTTAAAAA 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 TAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTGATGCCAGTTAGTCTCTGAAAACTTTCTGTGATGAGTGT 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 AAAATTCTACACCTTAATCTCCTTTCTTGTAGGATCTGGGAAGCAGTATGCACTTGATTGCACCAAAGATTTTA 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 CGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAAGTAAACTATATCTTCCATTTAGACAAATAAAATATCTT 5106
Query 73 ---------- 72
Sbjct 5107 TTTGATAAAA 5116
