Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- XR_001737206.2
- Aligned Length:
- 4589
- Identities:
- 65
- Gaps:
- 4517
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCATGTGAGGATTAGGGAGCCCGGAAAGCCCGTTTCAACTTTTCAGTTCTGAGTCCCGAGTCACTACTCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGTACCGTCTGGAGACTTAATGGGAGCGAGTGCGAGGCAGTGAATTCTCCGCTCTCTAGTTTTCCAATTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGTCTTCAAAAAAAGGTTTGCTCTTGAGCTGCGCCTAAACTGAGAAGCGGGAAAGGCTAGCCCCGCTAAAGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGACGAGTGGCAGAAGCGGAAACCCAGTTAAGAGAAGGGACTGCCCTGGAGAGCACAGAAAGCGAAGGTTAGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGGAAAGCGGCGCCCCTCCGAGGAAACCGACACCGCCCCGCCACGCCAAGGCAATGGGCGCCACCACGCAGCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCGGGAACGCGCGCCGACGCCCCGCGCTCCGCCGGCGTCCGCCCGTCCCCGCGCGCCCCCTCGCACCCCACGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGGAGGCGGGGCCGGCGGGGGCGCGCGCGGGGCCGCGGGTAGGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGAGCGGCGCCGAGAGGCCGTGCGGGACGCGGGCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAGGACCGGCCGAACGCAGAGGTTGATTCTTCACCACACTGAAACCATTAGGAAAAATCCTTGTGGTTAACAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGAGGCTTCAGAGTGTAACCTGTACTCGGGCCTAGAAATTATTTAAAATGGCGACTGATACGTCTCAAGGTGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGGAACTCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GACCCACCTGGTGCAGAGGAGTCTTGTCTTGACCTGCTTTGGGAGAGTGTTGTCTTGATGCTTTTCTCTTCCTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTTGGAAAACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCTTGTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCCATTGCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCTAGAGAATCACC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGGAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGAATGGGTGGATG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGCCCAGGAGTTCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGAAGAAGACTCTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGGGAAGGCCGCATCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAAGCTAGGCCCTTGCCTAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCACAGTCATCAAGAAACCTAGTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAAATTGCCGGGCAAGGGCAAATCCACCATG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAGAAGTCTTTCAGAGTGAAAAAGTAAATTTTATAGGAAAAAAGGGTATCATGATGAAATTCAAAATCTTATTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCTAAGGTCAGTGTGCATTTGTTTAGTTTTGATGCTTTTCAAATTACATTATTTTCCTCCCCTATGAACATTGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGGGAGGGACTCTAAATAAACCAGTTTAGGCATTTGCTAGCTTTAGGTGCTTTTATTGGTGCCTGCCCTTTTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCCTTTTTCTCTGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATCTAAACAGTTGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAATGGAGGCACAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TATAGCACTGACTGAGTTGTAAAGCCTCCTGCCTGGAGACTTCAGTTATAGCTGTAATAATTAATCTTATTTAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAAAGCCACTCCACTAACCTTTTCTCTCCAACTGTAAACACAGAGACAGCTTTGGGAATAAGCCAAAAACAGGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGATCTCATTAGATTTTGAAGATATATGACTCCTTTGGGCTACATTTCATATTGATCAATTTCTAGGTATTTTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTTTGTTGTTGTTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTGTTGTCGTCGTTGTTTTGAGACGGAGTCTTGCTCAGGTGCCCCGGAGTGCAGTGGTGCAATCTCAGCTCACT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTAC 3330
Query 1 -------------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAAC 37
||||||||||.||.|||.||||||||||||||.||||
Sbjct 3331 CACCACGCCTGGCAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCGTGTTGGTCAGGCTGGTCTCGAAC 3404
Query 38 TCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC--------------------------------------- 72
||||||||||||||||||||||..||||.||||||
Sbjct 3405 TCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGTGCCTGG 3478
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3479 CCTATCCCACTTGGTTTTTGACTGAAGGGGAAGTGTAGAAATATATTGATTTGTGATTTCTGGTGTCACCTGTG 3552
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3553 TTACCAAAAATCAAAACAAATCTTTTTTATTTTTTATTATTATTATTATTTTTGAGACAGAGTCTCGCTCTGTC 3626
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3627 GCCCAGTGTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAAACTCCGCCTCCCAGGTTCAAGCGATTCTCCCA 3700
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3701 CCTCAGCCTCCTGAGTTGGGTCCTACAGGCGCACACGACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGT 3774
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3775 TGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACTCACCTCAGCCTCCCAAAA 3848
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3849 TCCTGGGGTTACAGATGTGAGCTACCACTCACGGCCCAAATCTTCTTGATCATATGTTTAAATATATTTTTTAA 3922
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3923 TATTTGGAGCATGAGTTGTCACTTCTTGTTTGCCTTTTTTATAAGGAAATGTTGGAGAGTTACATCATTGCTAA 3996
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3997 TGTAGAAATGTTAAGTGGAAAAATATACAGTTTGGTAAAATAAACTAGATTCTACATTTATTTGTGGGTTTTTT 4070
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4071 TCCCCTCCTTTCTTTCCACAGCACTTTTGATATCAAGCAAGTGGCTTCCTTTTTGAGATATTAAAAAAAAAAAG 4144
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4145 AAAAGGAAAAAAGTAAATGAAGCCCAACTACCTAACCCTTTCTTATTTGTATTTGTTTTAGTATTGTGAAGTTG 4218
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4219 TGTTAAATAGTACTAGCTAGAAATACAAATTTCTGGTTATCATTTCTCTTCCCTGTGGCACTTGACATTTTAAT 4292
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4293 TGTCTTAAAGTTTTTGAAGTACATCTTCTGGCCCCTTGAGTACTGCCAGAGGCAAAAGATGTTTGTTTCTTATT 4366
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4367 CATTCCACTTTTGTCTCCTGGGATCCCTTCTGTAGCCTAAAGTATGGCTGGGAAATGGACTTGAGAAGATTGGC 4440
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4441 TTGAATTAGATCATAATCATGTGTGATCCCATCATGAATTCATTGGAATTTGTGTTGCATGTAAGGCAATCTTT 4514
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4515 CCTGTTGTAAATCTTCCTTTTTTAATGTACATATATTTTGAAAAATATGAATAAACATGAAATTTTAAAAGCTG 4588
Query 73 - 72
Sbjct 4589 C 4589
