Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- XR_001738234.1
- Aligned Length:
- 6370
- Identities:
- 53
- Gaps:
- 6312
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCCTGACTTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCACTGCGCCCGGCCCAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTCCTCTTTTTAACTGACAAAGCACCTACTGAAAGAACAGATAGTTCATAATTTCTCTTGGCACTAGTAAATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGATTCTTAGATATGGCTGATACTAACAATCCACACAGTCAAGTCTGGTAAATACGAAAACTTCACCCTTCTAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTTAAAGTGGTAACTTGGTTCAGTGTGATTCTAGGGTTTAGAAATCTGCTTACAAATGAATTTATCTGCTGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATATATGTATTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGCCATCTCGGCTCGCTGCAAGCTCCGCTTCCTGGATTCACGGCATTCTCCTGCCTCAGCCTCCCGAGTAGCTG 444
Query 1 -------------------------------------------------------ATGGGGTTTCTCCATGTCG 19
||||||||||.||
Sbjct 445 GGACTACAGGTGCCCGCCACCGCGCCCGACTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACC------ 512
Query 20 GTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC--------------------- 72
.||||||.||.||||||||||| ||||||||||||||||.||||||
Sbjct 513 ------GTGGTCTCGATCTCCTGACCTC--GTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 578
Query 73 -------------------------------------------------------------------------- 72
Sbjct 579 GTGAGCCACTATGCCCGGCCTATATGTATTCTTTACTAAAGCTCTGAACTTGTTATTTACTGCAATAAAGACAG 652
Query 73 -------------------------------------------------------------------------- 72
Sbjct 653 TTGCATCTCTGGCAGTAAAATACAGTTGCTCTACCCAAACAGAAAACTACTCAAAGTCCATTGTCTAGTTCACT 726
Query 73 -------------------------------------------------------------------------- 72
Sbjct 727 TGAGAAGCAACAAGTAATACTATAACCTAACTCATTTGAGGGCCTCCTATGTTTTTAGTGACATTAGACAGATG 800
Query 73 -------------------------------------------------------------------------- 72
Sbjct 801 AGCTGCTCTCACAGTCTGGGGTACAGTGGGAAAGCAAGAGCTTTCATCATGAAGCGTTTATAAGAAAGGAAAGG 874
Query 73 -------------------------------------------------------------------------- 72
Sbjct 875 AAACATGTCAGATCATTACATTTGGGTATAATGAACTAGGGGTATATGTCTCACAAGACCCAGTACGTGGTACT 948
Query 73 -------------------------------------------------------------------------- 72
Sbjct 949 TAATAGAACCTCAGTGAATTTTGGCTTAATTGGAAGGAATCATTTGGCGAGAACAGATAAGCTTTGGCTAATAT 1022
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1023 CACCTAAAATCACTACTGGATAGGAAACAGGTGAACGTGAATGGAGACTGTAATATAGCACTAAAAAATAAAAA 1096
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1097 TAAATAATCACAAGAATAGGCTTTGAGCTTAGATTGAAGGGCTGGCAAATTCCTCTGCTGAAGAGCTCTAATGG 1170
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1171 GAACCTGAGACATGCTTTGGTCTGGTTCCTATCTCTGAGAGATGCCTGTTCAACACTGATTCTCAAATGCTATC 1244
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1245 TTTTACAGAGGAGAAGGTGGAGTGGGTAAACATGAGGATTGAGCAATTAACACTTAAGAATTGTAAATTCTACC 1318
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1319 CCTTAATCTCCAGAAAAGTATGGGAACCAGCAGGCCAAAGAATGCTATAAATCAGAATCTGGCATGAGTCATCT 1392
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1393 GAAAGGCAGTTAGTTATCTTGGAGAGAGCTGCAAATTAATGCTTCAAGGTCTGCTGTGAGATGAATTCCAGGGG 1466
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1467 AACCACACCCTTTTCCTTCTCTTCTGACACAGCTCAGATCTGGCTCATCCCCCATCCCTCATATGGGTTTCAGA 1540
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1541 TGGCAGTGGGCTTACAGAGAGTCTGCCTTGCCTGGACTGGTACTCCAAGTCCAGCAATTTAAGAGAACTGAACT 1614
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1615 GGGCGAGTCACCTCTGGGAGAAGGACGTGGGATCCCACCCCAGTTCTTAAATAACTCAGGAAAGGAGTCAGACA 1688
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1689 CCACAGAGGTTTAAAAATACCTGTGCTCAAGTTCAGAGCAGCAGAGCACTTCAGGATCAATTCCCAAAGATCCC 1762
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1763 AGAAATTGGAACTGGGTGGGGTACCTAGTTTACTTTTTTCAGATGACAGGACAGAAGGAAAGTGCAGAATTAAG 1836
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1837 AAAGGGAATGCAGCAGGGTAAGGACCTCTAAATTTTAAAAAGGCTAATTTTAGGAGGTTCTAAGAAATACAAGT 1910
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1911 TGTCAGCTGAGGAAATCCTGGCCACCCTTGAGTATCTTCTTCAGGAGAGCAAGGTGAGTCTACCTCACACTGTG 1984
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1985 TGAGTGCTTAGGTCTGAAGTCACTCAGTCGCATGCCTCTCTTGCCCACAGCCATTACGAAGTGACGGAGCTTCC 2058
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2059 TTCTCTGAAGTTACATCCTTCTCCCACTTGGTCTTCCCCTCCCCTCCTCCCCCAGCGGTTTTATTCAGTGGATG 2132
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2133 GATTGTGAATATTGCAGCCAGCTGACTCCCTGTGTGTCCAGTAGGCCTTCTGCAATAAGGATGCAGAGGAGGGA 2206
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2207 GTAGCCAGGAGGTGAAAATAGCATTGAAAATCAGTGGAGAAGCCCTTGTCTCCTCAGCAACCAGTACCCCAAAG 2280
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2281 GGCACTGACCAGGGCCACAGCAAGGAACTCTGTTTTGGGGAAGGAGTTGCACACTGGCTTTAAAATAAGACAAA 2354
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2355 GGAAAGGGGGAAATGTTGTGATTAAAACTCTGTTCTCTTGGCTAGAGGATGAATCATGTAACTCTTGTCTGAGT 2428
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2429 GCAGCCAATGGTTGCCCAACTGAGTCAGCCCTGCCTGGCCCTCCGTTCTTGGGTGGGGCTTGCCTGGGCAGGGC 2502
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2503 TGTCTGCAGCACTGCTAGCTGCCAAAACTGAAGTTCTTCAGGGACTTCAATCTGGCATTTCCACCCTCACGTAG 2576
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2577 CCACTCTGCAAGCTCTATTCCTGGACAGATGTGGGCTTCCTGCATCCTGGTTAGACACATTTTGACAGGAGGGC 2650
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2651 CTTGGGGCTGGGGCTGAGGGGCTGCAGTGTCCTCTCTATCCCCAATAACGTACTCTTGCACCTGAAACATTCAA 2724
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2725 TTTCATTTAATTGTTTACTTGTCTGCCTGAGATTTAAGCTTCTCTTGATTAAGAACTACAAATTATTCTGCTTT 2798
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2799 TATTCATGGAGCACTATATAACTGTTATGTGCATAAATGAACCACACAATCCCTTGGGCAGTAGCTGAGGTGCA 2872
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2873 GGTGTGATTACCCAGGACTAGGCTGAAAGCCTTGTAGCTCAGAGCTCAGGAGGACGATGTGAGAGCTGGGAAGG 2946
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2947 GCCAGGAAAGGGGCCCCAAAAGTGTTCAACTATGAACGGAACAGTAGATAGAGTACACAGGAGTGCACATTCCA 3020
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3021 TACGCAAAAGGAAAAATATGTGTCCTGCTAAACAGGTCTAGTCAGAATGACATGACTGTGCTCCTTCTCTTCTA 3094
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3095 ACACTTGCTATTTTCTCGTGTTTCATTCATCCCATCTTCTACTTTTTGCTTTTCTAGTGCTGCTATCTCACTGC 3168
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3169 TGAGCTCCACAGGATAATAACAGCCTTGCTGTCCACTCACCTTTTATTGAAGTATTCTAATCTGATGCCTATAC 3242
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3243 ATGCCCTCTACATGTTTGTCTGAGCAACAGGTCTTAAGAAGGGAGGCGGAGACATCTTTCTCTGCATAGTTTTC 3316
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3317 TCTATGGAAAACAATTCTGGACTCCACAAATTTAGTTACCTTAGGAGGAATTCAATTTTCCATTTTTGGTTCTC 3390
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3391 CCTCCCTGAGCACCTACTTTGAATGTCCCAGACATGGTGTTAGGCATGAGGGTGTTCACACACACATACACACA 3464
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3465 TGCACACACACACAAAGCTCTCCATGGTGCTTGCCTTTGAGGAGTTCACCAGCTAATGGAATACTATTAAAGCA 3538
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3539 TTTGGCCTGAATTCTAGTTATTTGTGTTTCTGTTTCTTTCCTCACTAGGTTGCAGGTTTTTTGAGCAGGGTCCC 3612
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3613 AATAGCCAGTGCCCCAGCCCTCATAGAGCCTGCTCGATGAATTGTTAAGAAATTGATAATGATGTATTTTGGTT 3686
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3687 GTCCTGCGAGTAGCAGACAAGCAGGAGTCCTCCTCAGAAAAGTGTCTGCTCCTGAAAAATCTCAAATGTTTGCT 3760
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3761 TTGGACCTATGCCCAGATCCCGGCTGCAGTTTCAAAGAGGACACTTCTGCAGAGTGAGTCGGACTTGCTTTGCT 3834
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3835 CCTCTGTGTCTTGTCCATACCCTAGTTTTCTTACAGCCCACCCAGAAAATAAACGGCAGGGTGTCAGTAAAAAC 3908
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3909 AAACATCTGTTATTTAAAATATGTTTGAGGTTTCCTTCCTTTTGCTTTAGAAATTTTGGAGTTTTTAAAATTGA 3982
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3983 ACCCAGAAGGCATTCTTAAATTTGATCTCTGAAGGGAATTCAGAAAAAATGAGTTGAAGCAATGGATCTGGATC 4056
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4057 CAGGCTGTCTCTCTCACCTCTCACCAACTAAAACTTGCCCACTAAAGAACTGGGCAGCAAAGGAACGTTTCAGA 4130
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4131 TGCAATTCAATAGGAAGAAAGAACTTGGAAGAAACCTCCTTCAATCTAACCAACTACATCAATTTTTCCTTAAA 4204
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4205 GAATGCTTAGGCATCAGCCTAATCAGCCAACATAGCTACTGTCAAAACTGCTTTTAGTTAAATCCTTTGGTAGG 4278
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4279 ATGGGTGGTATTTATTTAGTAAAGGGATAGAAAGTGCTGAAAATTGTTTAAAAGAAGTACATTCTTTCTTTTTG 4352
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4353 CTTTTGATGTGGATTCCTAAATTTGTTGAGTCCCCAGAAAAATGAGAAACTTAAGATGTTAAAATTTTAGTCCA 4426
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4427 GCTTTCTCAGCACTTTGAGTGCTAATTTATACATTATAATCCTGAAAGAATTCCATTGTTTCTCTCAACTTTAC 4500
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4501 GCTTTAAAAGACTGGACTGTGTCCAAGGGTATACCAAGTGGGTTGTGCTCTACAAAAGTCACATTTTTTGAACT 4574
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4575 GTCAGTAGAAAGCAGGGAGGCACACAGTCTCAGCTCCACCCTGACCTCACTGGAGTGGCTGCTTAGGAGGCTGG 4648
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4649 CCAGCACACGGGAGGAAAGGGGCCTATATGATGTGTCGGAGAAAAGCTAGGAAGAGCATCACCCAGAAAGCAGG 4722
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4723 GTAAGACCCAAAAATTGCTTCATGCCCAGTAGACCAAAAAAATTGTAAGAACCTAGATAAGAAACTCCAAATGG 4796
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4797 TGGATCAAGGGCCACAGTGAAGAAACTATCCTCTGGCTGTGAAGGAACAAATACACCATTTGGAAGGGATGATT 4870
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4871 AAAGAGAAACTGGATAGGAATCTGTGGGGGCAGGGCCGATGAAGAAACTTCCAATAAGTTATATGAACTCATTC 4944
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4945 CCACTCCAACCCCTGGCATTATCTTTTGCAATTTGCTGAAACATGTTGGAGGCAAAGATCACCGACTGGGTGTT 5018
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5019 TCCATGAGCCTGGCCTCACCTAAAACGCACAACATAAAACTCCATTCCTGGAGACTGAAACTCAAGCTTCTGGG 5092
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5093 GAAAAATATCCGCAACAACTGCAAACCTCTTAGCGGGAAAAGCTACCTCCCAAGTAAGGCTGAGGCAGGCTGCC 5166
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5167 AGGCGCATACTGGCCGATAACGAAAAGCGGTCTCGCCAAGGCCCTGCAGATCTAATTACTGCCCTCACCGGCAG 5240
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5241 TTCAGTCGAGAAACCTCTCCTGCAGACTGGCAGCCAGACCAGGTGTGACTCACTTCCTCTTGGAAAATGCCCTC 5314
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5315 TGAGATGGCACAGTTCTCCTTTTCCTTCAGGGAGTGTTCTGTCCAAACCATCCACCGAGAGTATCTGCAACCGG 5388
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5389 CCACACCCACATGGTCTCACAGCTGAGTCACAGGCCTCAGACCACTGGGAGAATCCTGGAGCCCTTTGTGCTAA 5462
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5463 CCACGCCCTGCAGAAGCTCCCGCAGAGACGGAACTGGGTGGGGGCAGAAAACGGGGTGGGCTTAATGCATCCCA 5536
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5537 GAATCTGGCTTAGGGCTCCCCTGTGCTGGCCTGGCTTGGAGCGCTCTGCATTCCACCCCAGCCAACAAGGCAGA 5610
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5611 GCTCCTGGTTTCACTTAGGCAGAGCTGGACTGAGGCTGGACAGGCAGCAGTGTCCACGGCTAGGGGCAGCGCCA 5684
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5685 TTCCTTCGGCCAAAGCACAGGTGGTGAACCAAGTACCAAAGGCACGTCTGTCTGTTTCACTGCACCGGGCCAAA 5758
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5759 TTAATCTATGATTGGAAGATCCTTCATCAAGCCTGCTCTTCCTCCATCTCTTTCTGGTTCCACTTATTAAGACA 5832
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5833 GCAAGGGAACCCTTTCAGTAGAGAAACCACGTCACACAGGGCCCTCTCCCACAAACCCCAGCCAAACTGCTGTA 5906
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5907 GAAAGAAAACAAGTGGACCTCCCTCCCTCAGCAGGAAGACCCTTTCCGTCGAGCAGACAACAGGAAGCCCCGAC 5980
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5981 CAGAAACGCCTGTTTGGCCGACGGACTAAGGGTTACGGAAGGGACGCCCCAGCTGCCTACTCGTCCTACCCGCG 6054
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6055 CCTACTTGGGCGGTACAGCCGGGAGCAGGCTACGAACATGCAGACCCGGCCTGCGAGCGGAACCCACCAAGAAA 6128
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6129 CACGCCAGCCAGGGCAGGGGCGTGTAGGAGGGATTCGGTAACCCGAGAGACGAGTGGGAAAGTAGGAAAGGACT 6202
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6203 CCAAGGCTCTAAGGATGGAAGAGTCATAATTGGAAAGAGCCTGGGTACCTGAATCACTGTATGGAGGAAAATCA 6276
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6277 CTTGCTGAGCAGGAACATCCTCATTGGACTAGCTATGTGGAGTTTTGCTCTTGTTGCCCACGCTGGAGTGCAAT 6350
Query 73 ------ 72
Sbjct 6351 GGCACG 6356
