Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- XR_001738550.1
- Aligned Length:
- 5406
- Identities:
- 63
- Gaps:
- 5334
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGGTGGTCTCGATCTCCTGACCTCTTGAT 74
Query 1 -----------------------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCT 27
|||.||||||.||||||.|||||||||
Sbjct 75 CCGCCCGCCTTGGCCTCCCAAAGTGAGTTTTTGTATTTTTAATGGAGATGAGGTTTCACCATGTTGGTCAGGCT 148
Query 28 GGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC----------------------------- 72
|||||.|.||||||||||||||||||||.|||..||||.||||||
Sbjct 149 GGTCTTGCACTCCTGACCTCAGGTGATCTGCCTGCCTCTGCCTCCCAAAATGCTGGCATTACAGGCATGACCCA 222
Query 73 -------------------------------------------------------------------------- 72
Sbjct 223 CGATGCTTGGCCTCAATTGTCTTCAAAATCAACAATCCTATATTGAAAAGTGAGGCCAGGCACAGTGGCTCATG 296
Query 73 -------------------------------------------------------------------------- 72
Sbjct 297 CCTGTAAACCCAGAACTTTGGGAGGCCAAGGTGGGTAGATCGCTTGAGGTCAGGAGTTCAAGACCAACCTGGCC 370
Query 73 -------------------------------------------------------------------------- 72
Sbjct 371 AACATGGTGAAACCCCATTTCTACTAAAAATACAAAATTAGCTGGATGTGGTGGTATGCACCTGTAATCCCTGT 444
Query 73 -------------------------------------------------------------------------- 72
Sbjct 445 TACTCTGGAGGCCGAGGCAGGAGAATCACCTGAATCCAGGAGTAGGAGGTTGCCATGAGCTGAGACTGGGCCAC 518
Query 73 -------------------------------------------------------------------------- 72
Sbjct 519 TGCACTCCAGCCTGGACAACAAGGTGAGACCCCGTCTCAAGGCAAACAAACAAATAAATAAATAAATAAAGACA 592
Query 73 -------------------------------------------------------------------------- 72
Sbjct 593 ATTGAACCTGATTTTTCCCTTAGATTCTCCAGAGAAAGAACTTCTATATGGAAAGAGGCAGATTGCTGGAAGGA 666
Query 73 -------------------------------------------------------------------------- 72
Sbjct 667 GTAAATAATTCACAGACAACTCATAAGCCCTGAGCTCTGGTCTGTCTCTGCCAATTAAATGCTGTGGAACTTTT 740
Query 73 -------------------------------------------------------------------------- 72
Sbjct 741 GGGTAAGTCATTTAAAATATCTGGGTTTCAGATGATTCAGTTACATATGAGTGGGTCCAACCCTCGAATCTTCT 814
Query 73 -------------------------------------------------------------------------- 72
Sbjct 815 CACTTGTCTTAGTGATGATGAGCTAATGATGTCTGGTGGAGCCTCATCTGTTGAGATTTTGGAGGTGTGGGTTA 888
Query 73 -------------------------------------------------------------------------- 72
Sbjct 889 AAGTTGTGTCCCTCAAAGCATTTCTTCCTCTCAGGCATACCAGAGGTGAGATTCACAGACCACAAAGATAGTAT 962
Query 73 -------------------------------------------------------------------------- 72
Sbjct 963 GAATTTAAACTGCAAATGCAGGAGAAAATGATTCATAGTTAGAATTCTCAGAGTAATATTGGTTTTAAAGACAA 1036
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1037 TGTAACCTAGAGGACAAGATGAGACCAGAAAGCTCTCTTGTCACACCTCTTTGCCAGTGGGTGGATGTTATTCC 1110
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1111 TAATCTACCCTTTTACTGAAGTATAAGCCTTTGAGGGTGCTGATACTAGATAACTTACACTCTAGCTTCCTACT 1184
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1185 ATAGATTCAAGGCTTTATCTCCTGTCCTCACATGGCTGTTAAAATAGTAGCCCCTCAGTTATCAAGTCCAGCAA 1258
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1259 CATTTATCAGGGCAGTCTGAGCTGCATTTCTGTTTCATTTCTGGCTTTGCCCCGAGGGATTTCTCTTACTTTCT 1332
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1333 TGCATGTTCAGTTATATATTTAAAAGCATGTTTATTATATTTTGTCCATCATTTCCAGGTGTTTTTTGATAGGA 1406
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1407 GGGTTCTCAGTTAATTTACTATATTGCCATAAATGGAAGTCAGCCCTCTAAATTCTATGATTCTGTGACTATTA 1480
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1481 ACCTCTTTTCTCCCATTGAGCTAATTTGGATATTTATCTTATTTCATCTTGATTCATTGGGTGTTCTGACTCCA 1554
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1555 TGGTGTGTTGGAAATATCCTCAGTTCTCTTGGAGGAATATTAATAAGAAATTGCATAAGTGAACCAAAAAAACC 1628
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1629 TAAAAGCTAATGGCTGTAACTTTGATATTTACATGTTGGGGCTGACCCTAGCATGGAGATATTCAATTGTCCTC 1702
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1703 CCTCTAATATTTCAGCCTATGCCATGATACAGACCATTAAGGTCACTTGTGTTGCTTTACTCGGCAAGTATAAC 1776
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1777 TTGTGATATACTTGTAATATTGTGAAAGATTAAACTTAAATGGCAATATTAAATGTCAGCAAAAGTTAAATCAG 1850
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1851 TGGTGTACTAAAGAGACTCCAGTTCTATCTAATGCCTAACATAGGGAAGGTCTGACTGCCCTTTGGACTGGATA 1924
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1925 TGATCTTGGGTTTCTTAGACATTGGAGGCTGAGGTACCTTATCTACTGCCTCACAGTTCTGGAGGCTCTACAGC 1998
Query 73 -------------------------------------------------------------------------- 72
Sbjct 1999 TGCTATTAACATGTCAGTAGGGTTGGTTTCTTCTGAGACCTCTCTCCTGGGCTTGCAGGTGGCCATCTTCTCCC 2072
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2073 TGTGTCCCAACGTGGTCTTCCCTCTTTGTGTGTCTGTGCCCTAATCTTTTTTTCTTATAAGGATACCATTCAGA 2146
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2147 TTGGATTAGGATCCACTCGTATAACCTCATTTTACCTTAGTTATCTAAAGACCCTATTTCCAAATACAGTCATG 2220
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2221 TTTTGAGGTACTGGGTGGTAGGACTTCAATATTTGAATTTGAGGGGACAAAATTCACCCTTCAGGAATGTAAAA 2294
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2295 GGTGGTCTGCTAATAGGCCTATGGATTATCAAGTCATTTTTTTTTTAAAGATAAGTGATTGTATTTCTTTCTAG 2368
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2369 AGCTATTACAGTGGTTCATACTGGCTTAACTTTATTATTCTCTTCCATCAATTTTCTAATTTAATAAAAGTTAA 2442
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2443 AACCTTCTATTATGAAAAATTTCAAACTCTCACAAAAATAGAGTAAATAGTATAATGAATTCAGTGTCCTCACT 2516
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2517 GCCTAGTATTATGGGTTGAATTGTGTTTCCCAAAAATTCATATGATGAAGTCCTAACCCCCAGCACCTCAGAAT 2590
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2591 GTGACTGTATTTGGAGATAGGGTCTTCAGATAATTAAGGTAAAATGAGGTCCATGAGTGGACCTAATCCAACCT 2664
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2665 GACTGGTATTCTTACAAGAAGAGGAGATTAGGACACAGACACACACAGAGAGAAGATCATGTGGGGACATAAGA 2738
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2739 AGATGGCCATCTACAAGCCGAGGAGAGGGGCCTCAGAAGAAACCAATGCTGCTAACATCTTGCTATCAGTTACC 2812
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2813 TAGCCCCCAGAACTGTGAGACAGTACATTCTGTTTTTTAAACCACAGAAGACACGTATTGCATGACTATTTTTT 2886
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2887 TTAAGTCCAGAATAGGCAAATCTGTAGAGATAGAACATAGATAAGTGATTGCATAGGGCTTATAAGTTGGAGGT 2960
Query 73 -------------------------------------------------------------------------- 72
Sbjct 2961 AATTGGAAAGTGACTGCCAGTGGGTATCAGGTTTCATTTTGGGGTAATGAAAATGTTTGAAAATTGACTGTTGT 3034
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3035 GATGGTTGCCCAACTCTATAAATATACTACAAAACATTGCACTATACAAATTAAATGTGTGCATTGTATGATGT 3108
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3109 GAATTAAATTCCAGTAAGCCTGTTTTTAAAGACTCAAAGAAAATTAAAGAATGACTGAAAACTTTCCAAGTTTG 3182
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3183 ATGAAAATTATAATGCTACAAATCCAAGAATCTCAAAAAACCTTAAGCACAAGAAAGGTTAAGAACATGACCCC 3256
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3257 ACGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGAGCCACTTGAGGTCA 3330
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3331 GAAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCCAGGTGTGGT 3404
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3405 GGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGCCGCAGGAGAATTGCTTGAACCGGGAGGCAGAGGTTGT 3478
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3479 GGTGAGCCAAGACTGTGCTATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCAACAAAACAAAAACAAAAAC 3552
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3553 AAAAACAAAAAAAGAAACAAAAACAAAAACACATGACCCCAAAGCGCAACATCATCAAATTGCTTAAAATTAGT 3626
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3627 GATTTGGGTCCTCTGGAATTAAAAGAAAAGAGAGAGAGAAACTAGTGATAAGAAGAAAGCAGTCAGAGGGAGTT 3700
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3701 GGGGAATGACGTTGTTTACGGAAGGATGACAACAGATTTCTTCTCAGAAAAAATGTAAACCAGAAGACAGTGGT 3774
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3775 ACTACATTTTTGAAGTTTAAGTGCTGCTTGACTTATGATGGGGTTATGTTCCAAAAAACTCATCATAAATTGAA 3848
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3849 AATATCATGTCTAAAATACACTTTCAACTTACATTTTTGATTTATGATGTGTTTATCTAGACATAATTCCATCA 3922
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3923 TTAGTCAAGGAATGTACTGAATGTGTTTCACTTTTACACCATCATAAAATTAAAAAGTCGTAAGTCAGGGAAAA 3996
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3997 TCTGTACTGCAAGAAAAACACTGTTAACCTAGATATCTTTGCCTAGTGAAAATATCTTTCAGAAATGAAGATGA 4070
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4071 GATAAAGGCTTTTCATACCAACAAAAGTGGAAAGAATTCATCATAAGAAGACTTGAGTGAGAAGAAATGCTAAG 4144
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4145 AAAGCTCTTCAAGTAGAAGAAAATGATACCAGATGGAAATCTGGATCTCCACAAAGGAACAAAAAGTATTGAGA 4218
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4219 ATGGGAACTATCCTATGTGGTGCTGGGGATGCCAGAGTTGGAATTCAAGACCCAGGGAGAAGGGCTTCAGTCAG 4292
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4293 CACTCCAGTACCTCAGCTGGGAATCCTGGAGGCTATACCCTATGTATGGGGAAAATGAGAGGTAGATGGAAACT 4366
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4367 AAAAAACAAACAAACAAACCAGTCCCTGATTAGTTGTGACTTTATCTGCCTACCAGAAAATAGGACTAGCCCTC 4440
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4441 TCTGGAAGATGATAGCATTATCCAGAACCTCATACACAAAATTTACCCAGGACACTCATGAAGAGGAGGAAGAA 4514
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4515 AAGACAACATAAACAGACATACAGGTCACCTACTTATTGGAGTTAACAGATGGATGTTCAAATCTGTATTATTC 4588
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4589 TTATATTCAAGAGAATGAATGACAAAGAGTAGAATTCCACTGGAGAACTAGTTAACCAAGGCTAGATGGCTTCA 4662
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4663 TTGAAAGACTTTGTCAAGCATGAATAAAGCCACTATAAATATTCTTGCACAAGTCTCTTTGTGAATACATTTTT 4736
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4737 ATTCCTTTAGGTAAACGCCTAGCGGAGGAATTGCTGGGTCATACATAGGGTAGGAGTATTATAACCTTATAAGA 4810
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4811 AACTGTCAAATGGTTTCCAAAATGGTTTCACCCATTTATATTCCCACAGACTTTATTCATAATAACCAATCCTG 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 AGGGAAAATCTATAATGTTCGTCAAAAGAAGGAAATCCTGGCTGTGCCTATAATCACAGCATTCTGGGAGGCCA 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 AGGCAGGAGGATCACTTGAGCCCGGGAGTTCAAGACCAGCCTGTGCAACATAAAAATGGTAACTCATCAAACCT 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 GCAGCAGAAGGCAACTTTTCAACTCTCAGTCAATTTGATCAACATTCAGCATCCATCAAATGAAGGATTGGGAG 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 TGATAACCTTAAAAAATCCTGCTAGGCTGCTGGTTATTGATTCTCTGTTCAGCCTGATGGATGAAGATGCAAAG 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 GCAACAAGTGAAAGTGCAAACCTGGCTGCCGGCCTCCTTCATACCACGTTAGGTTAGGCAGGACTTGTGTCTGA 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 AAAGCACCATTGTTAGTTTTACCAAAAATGCACTGCTGTCATCACGACCAATCAGAATGTCACCCTAGCTGGAG 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 ATCTGCTCCTCCTGGCCTTTCCTTGGGATTTTCAGAAAAGCTCAGAAAACAATTTACAATAAAACTTAATTACT 5402
Query 73 ---- 72
Sbjct 5403 TTTA 5406
